INFO 2025-06-26 10:30:42,743 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber
INFO 2025-06-26 10:30:42,743 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Elkhorn Slough plume racetrack Monterey triangle (missing short mission 01) - ctdToUse = ctd1 
INFO 2025-06-26 10:30:42,743 process.py process_mission():449 [1] Processing BIOLUME mission 2005.020.03 by user docker_user on host eae60d30a712
INFO 2025-06-26 10:30:42,743 process.py download_process():165 [1] Download and processing steps for 2005.020.03
INFO 2025-06-26 10:30:42,744 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005020/2005.020.03
INFO 2025-06-26 10:30:42,744 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005020/2005.020.03 to /data/auv_data/dorado/missionlogs/2005.020.03
INFO 2025-06-26 10:30:42,849 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.020.03
INFO 2025-06-26 10:30:42,850 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.03/ctdDriver.log (221011 bytes)
INFO 2025-06-26 10:30:42,874 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.03/ctdDriver2.log (224701 bytes)
INFO 2025-06-26 10:30:42,898 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.03/gps.log (15188 bytes)
INFO 2025-06-26 10:30:42,907 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.03/hydroscatlog.log (156734 bytes)
INFO 2025-06-26 10:30:42,934 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.03/navigation.log (750134 bytes)
INFO 2025-06-26 10:30:43,004 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.03/isuslog.log (2613 bytes)
INFO 2025-06-26 10:30:43,009 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.03/parosci.log (152294 bytes)
INFO 2025-06-26 10:30:43,027 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.03/tailCone.log (157243 bytes)
INFO 2025-06-26 10:30:43,054 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.03/biolume.log (180748 bytes)
INFO 2025-06-26 10:30:43,075 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data
INFO 2025-06-26 10:30:43,087 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.24 seconds
WARNING 2025-06-26 10:30:43,087 process.py download_process():196 [1] No lopc.bin file for 2005.020.03
INFO 2025-06-26 10:30:43,087 process.py calibrate():227 [1] Calibration steps for 2005.020.03
INFO 2025-06-26 10:30:43,146 calibrate.py _nudge_pos():1680 [1] seg#   end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2025-06-26 10:30:43,148 calibrate.py _nudge_pos():1711 [1]                   -            -            -         0      0.00              -              -                             -
INFO 2025-06-26 10:30:44,146 calibrate.py _nudge_pos():1806 [1]   121:        0.110   -0.0001222   -0.0000625      1685      5.61         -3.231         -2.064 2005-01-20T18:00:36.642092032
INFO 2025-06-26 10:30:44,606 calibrate.py _nudge_pos():1806 [1]   169:        0.090   -0.0002454   -0.0001157       605      2.01        -18.088        -10.652 2005-01-20T18:03:24.650582528
INFO 2025-06-26 10:30:44,880 calibrate.py _nudge_pos():1862 [1]  178:            -            -            -         5      0.01              -              -
INFO 2025-06-26 10:30:44,880 calibrate.py _nudge_pos():1868 [1] Points in final series = 3170
WARNING 2025-06-26 10:30:44,887 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 4.76 Hz
INFO 2025-06-26 10:30:44,926 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds
INFO 2025-06-26 10:30:44,970 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 10:30:44,992 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 10:30:44,994 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.020.03/ctd1.nc
INFO 2025-06-26 10:30:44,995 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN
INFO 2025-06-26 10:30:44,995 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))]
INFO 2025-06-26 10:30:44,995 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1
INFO 2025-06-26 10:30:45,034 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 17 seconds, d_end_time_diff: 0 seconds
INFO 2025-06-26 10:30:45,057 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 17 seconds, d_end_time_diff: 0 seconds
INFO 2025-06-26 10:30:45,058 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.020.03/ctd2.nc
INFO 2025-06-26 10:30:45,059 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN
INFO 2025-06-26 10:30:45,060 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))]
INFO 2025-06-26 10:30:45,060 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2
INFO 2025-06-26 10:30:45,067 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz
INFO 2025-06-26 10:30:45,103 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: 0 seconds, d_end_time_diff: -1 seconds
ERROR 2025-06-26 10:30:45,108 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']"
ERROR 2025-06-26 10:30:45,108 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.020.03
ERROR 2025-06-26 10:30:45,108 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.020.03
INFO 2025-06-26 10:30:45,114 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03_cal.nc
INFO 2025-06-26 10:30:45,156 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time
INFO 2025-06-26 10:30:45,160 process.py align():251 [1] Alignment steps for 2005.020.03
INFO 2025-06-26 10:30:45,180 align.py process_cal():139 [1] Processing dorado_2005.020.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.020.03
INFO 2025-06-26 10:30:45,185 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 10:30:45,187 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 10:30:45,198 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 10:30:45,199 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 10:30:45,209 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 10:30:45,211 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 10:30:45,217 align.py process_cal():161 [1] Skipping navigation_posx
INFO 2025-06-26 10:30:45,217 align.py process_cal():161 [1] Skipping navigation_posy
INFO 2025-06-26 10:30:45,221 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 10:30:45,222 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 10:30:45,232 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 10:30:45,233 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,243 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 10:30:45,245 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,255 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 10:30:45,256 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,266 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,268 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,278 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,279 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,290 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,291 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,301 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,303 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,313 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,315 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,325 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,327 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,337 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,339 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,349 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,351 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,360 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,362 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,372 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,374 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,384 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,386 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,396 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,398 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,408 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,410 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,420 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,422 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,432 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,434 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,444 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,446 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,456 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:30:45,458 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:30:45,470 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.13
INFO 2025-06-26 10:30:45,482 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.13
INFO 2025-06-26 10:30:45,495 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.13
INFO 2025-06-26 10:30:45,508 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00
INFO 2025-06-26 10:30:45,521 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 10:30:45,532 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03_align.nc
INFO 2025-06-26 10:30:45,573 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time
INFO 2025-06-26 10:30:45,575 process.py resample():273 [1] Resampling steps for 2005.020.03
INFO 2025-06-26 10:30:45,575 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m
INFO 2025-06-26 10:30:45,595 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03_align.nc mission netCDF file
INFO 2025-06-26 10:30:45,600 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03_align.nc mission netCDF file
INFO 2025-06-26 10:30:45,601 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-20T17:53:20.861944960 to 2005-01-20T18:03:54.648527616 (0 days 00:00:00 before mission_end)
INFO 2025-06-26 10:30:45,602 resample.py get_mission_start_end():1145 [1] hs2       : 2005-01-20T17:53:05.373006080 to 2005-01-20T18:03:54.638528384 (0 days 00:00:00.009999232 before mission_end)
INFO 2025-06-26 10:30:45,603 resample.py get_mission_start_end():1145 [1] ctd1      : 2005-01-20T17:53:28.851397760 to 2005-01-20T18:03:54.588531712 (0 days 00:00:00.059995904 before mission_end)
INFO 2025-06-26 10:30:45,605 resample.py get_mission_start_end():1145 [1] ctd2      : 2005-01-20T17:53:18.422112256 to 2005-01-20T18:03:54.638528384 (0 days 00:00:00.009999232 before mission_end)
INFO 2025-06-26 10:30:45,606 resample.py get_mission_start_end():1145 [1] isus      : 2005-01-20T17:54:24.787565696 to 2005-01-20T18:03:49.598873600 (0 days 00:00:05.049654016 before mission_end)
INFO 2025-06-26 10:30:45,607 resample.py get_mission_start_end():1145 [1] biolume   : 2005-01-20T17:53:00.603298432 to 2005-01-20T18:03:53.538569472 (0 days 00:00:01.109958144 before mission_end)
INFO 2025-06-26 10:30:45,608 resample.py get_mission_start_end():1145 [1] tailcone  : 2005-01-20T17:53:01.303284864 to 2005-01-20T18:03:54.478539264 (0 days 00:00:00.169988352 before mission_end)
INFO 2025-06-26 10:30:45,609 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03_align.nc mission netCDF file
INFO 2025-06-26 10:30:45,609 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter 
INFO 2025-06-26 10:30:45,643 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,652 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,661 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,670 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,680 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,688 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,697 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,705 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,713 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,720 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,727 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,735 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,742 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,750 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,758 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,766 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,775 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,784 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,792 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,801 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,809 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,818 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,826 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,834 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,842 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,851 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,861 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter
INFO 2025-06-26 10:30:45,956 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03_1S.nc
INFO 2025-06-26 10:30:46,453 create_products.py gulper_odv():401 [1] No gulper times found for 2005.020.03
INFO 2025-06-26 10:30:46,453 process.py archive():337 [1] Archiving steps for 2005.020.03
INFO 2025-06-26 10:30:46,453 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03, BASE_PATH = /data/auv_data
INFO 2025-06-26 10:30:46,453 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03 files to /Volumes/AUVCTD/surveys/2005/netcdf
INFO 2025-06-26 10:30:46,454 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.020.03_1S.nc
INFO 2025-06-26 10:30:46,461 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done.
INFO 2025-06-26 10:30:46,462 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.020.03_cal.nc
INFO 2025-06-26 10:30:46,471 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done.
INFO 2025-06-26 10:30:46,471 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.020.03_align.nc
INFO 2025-06-26 10:30:46,480 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done.
INFO 2025-06-26 10:30:46,486 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.03 done.
INFO 2025-06-26 10:30:46,491 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.03 done.
INFO 2025-06-26 10:30:46,496 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.03 done.
INFO 2025-06-26 10:30:46,501 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.03 done.
INFO 2025-06-26 10:30:46,507 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.03 done.
INFO 2025-06-26 10:30:46,512 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.03 done.
INFO 2025-06-26 10:30:46,516 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.03 done.
INFO 2025-06-26 10:30:46,521 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.03 done.
INFO 2025-06-26 10:30:46,528 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.03 done.
INFO 2025-06-26 10:30:46,528 archive.py copy_to_AUVTCD():116 [1] Archiving product files
INFO 2025-06-26 10:30:46,528 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.03/dorado_2005.020.03_processing.log /Volumes/AUVCTD/surveys/2005/netcdf