INFO 2023-08-22 10:02:52,943 process.py process_mission():324 [5366] dorado_info[mission]["comment"] = 'Elkhorn Slough plume racetrack Monterey triangle (missing short mission 01) - ctdToUse = ctd1 '
INFO 2023-08-22 10:02:52,944 process.py process_mission():336 [5366] Processing BIOLUME mission 2005.020.01 by user mccann on host mbari2338.local
INFO 2023-08-22 10:02:52,945 process.py download_process():139 [5366] Download and processing steps for 2005.020.01
INFO 2023-08-22 10:02:52,945 logs2netcdfs.py download_process_logs():664 [5366] src_dir = '/Volumes/AUVCTD/missionlogs/2005/2005020/2005.020.01'
INFO 2023-08-22 10:02:52,945 logs2netcdfs.py download_process_logs():692 [5366] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005020/2005.020.01 to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2005.020.01
INFO 2023-08-22 10:02:53,770 logs2netcdfs.py download_process_logs():700 [5366] Processing mission: dorado 2005.020.01
INFO 2023-08-22 10:02:53,772 logs2netcdfs.py download_process_logs():726 [5366] Time to process: 0.00 seconds
WARNING 2023-08-22 10:02:53,774 process.py download_process():165 [5366] No lopc.bin file for 2005.020.01
INFO 2023-08-22 10:02:53,776 process.py calibrate():192 [5366] Calibration steps for 2005.020.01
ERROR 2023-08-22 10:02:53,898 calibrate.py process_logs():2579 [5366] Error processing navigation: navigation has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.020.01
ERROR 2023-08-22 10:02:53,899 calibrate.py process_logs():2579 [5366] Error processing gps: gps has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.020.01
ERROR 2023-08-22 10:02:53,900 calibrate.py process_logs():2579 [5366] Error processing isus: isus has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.020.01
ERROR 2023-08-22 10:02:53,900 calibrate.py process_logs():2579 [5366] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.020.01
ERROR 2023-08-22 10:02:53,900 calibrate.py process_logs():2579 [5366] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.020.01
ERROR 2023-08-22 10:02:53,901 calibrate.py process_logs():2579 [5366] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.020.01
ERROR 2023-08-22 10:02:53,901 calibrate.py process_logs():2579 [5366] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.020.01
ERROR 2023-08-22 10:02:53,902 process.py calibrate():211 [5366] 2005.020.01 No depth_time variable in combined_nc
INFO 2023-08-22 10:02:53,902 process.py align():215 [5366] Alignment steps for 2005.020.01
ERROR 2023-08-22 10:02:53,902 process.py align():230 [5366] 2005.020.01 [Errno 2] No such file or directory: '/Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2005.020.01/dorado_2005.020.01_cal.nc'
ERROR 2023-08-22 10:02:53,902 process.py process_missions():412 [5366] InvalidCalFile("2005.020.01 [Errno 2] No such file or directory: '/Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2005.020.01/dorado_2005.020.01_cal.nc'")
ERROR 2023-08-22 10:02:53,903 process.py process_missions():413 [5366] Failed to process to completion: 2005.020.01
INFO 2023-08-22 10:02:53,903 process.py archive():264 [5366] Archiving steps for 2005.020.01
INFO 2023-08-22 10:02:53,903 archive.py copy_to_AUVTCD():45 [5366] Archiving /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2005.020.01/dorado_2005.020.01 files to /Volumes/AUVCTD/surveys/2005/netcdf
INFO 2023-08-22 10:02:53,903 archive.py copy_to_AUVTCD():56 [5366] rsync /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2005.020.01/dorado_2005.020.01_processing.log /Volumes/AUVCTD/surveys/2005/netcdf