INFO 2025-06-26 10:30:13,551 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:30:13,551 process.py process_mission():434 [1] dorado_info[mission]["comment"] = BIOLUME night missions, touched bottom on mission .00 - ctdToUse = ctd1 INFO 2025-06-26 10:30:13,552 process.py process_mission():449 [1] Processing BIOLUME mission 2005.014.03 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:30:13,552 process.py download_process():165 [1] Download and processing steps for 2005.014.03 INFO 2025-06-26 10:30:13,552 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005014/2005.014.03 INFO 2025-06-26 10:30:13,552 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005014/2005.014.03 to /data/auv_data/dorado/missionlogs/2005.014.03 INFO 2025-06-26 10:30:13,683 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.014.03 INFO 2025-06-26 10:30:13,684 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.03/ctdDriver.log (751651 bytes) INFO 2025-06-26 10:30:13,745 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.03/ctdDriver2.log (755253 bytes) INFO 2025-06-26 10:30:13,803 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.03/gps.log (8492 bytes) INFO 2025-06-26 10:30:13,812 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.03/hydroscatlog.log (516074 bytes) INFO 2025-06-26 10:30:13,881 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.03/navigation.log (2517066 bytes) INFO 2025-06-26 10:30:14,072 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.03/isuslog.log (8789 bytes) INFO 2025-06-26 10:30:14,077 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.03/parosci.log (501830 bytes) INFO 2025-06-26 10:30:14,125 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.03/tailCone.log (516763 bytes) INFO 2025-06-26 10:30:14,204 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.03/biolume.log (588476 bytes) INFO 2025-06-26 10:30:14,271 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:30:14,306 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.62 seconds WARNING 2025-06-26 10:30:14,307 process.py download_process():196 [1] No lopc.bin file for 2005.014.03 INFO 2025-06-26 10:30:14,307 process.py calibrate():227 [1] Calibration steps for 2005.014.03 INFO 2025-06-26 10:30:14,377 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:30:14,379 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:30:14,820 calibrate.py _nudge_pos():1806 [1] 64: 0.190 -0.0000281 -0.0000078 14 0.04 -96.441 -33.318 2005-01-14T09:26:50.849133312 INFO 2025-06-26 10:30:14,867 calibrate.py _nudge_pos():1806 [1] 69: 0.010 -0.0011361 -0.0012104 10229 34.10 -4.953 -6.578 2005-01-14T10:01:01.048685056 INFO 2025-06-26 10:30:15,208 calibrate.py _nudge_pos():1862 [1] 85: - - - 3 0.01 - - INFO 2025-06-26 10:30:15,208 calibrate.py _nudge_pos():1868 [1] Points in final series = 10583 WARNING 2025-06-26 10:30:15,220 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 4.76 Hz INFO 2025-06-26 10:30:15,316 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:30:15,414 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:30:15,481 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:30:15,482 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.014.03/ctd1.nc INFO 2025-06-26 10:30:15,483 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:30:15,483 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:30:15,484 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:30:15,571 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 8 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:30:15,639 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 8 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:30:15,640 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.014.03/ctd2.nc INFO 2025-06-26 10:30:15,641 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:30:15,642 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:30:15,642 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:30:15,650 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:30:15,763 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:30:15,768 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:30:15,768 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.014.03 ERROR 2025-06-26 10:30:15,768 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.014.03 INFO 2025-06-26 10:30:15,779 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03_cal.nc INFO 2025-06-26 10:30:15,823 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:30:15,827 process.py align():251 [1] Alignment steps for 2005.014.03 INFO 2025-06-26 10:30:15,849 align.py process_cal():139 [1] Processing dorado_2005.014.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.014.03 INFO 2025-06-26 10:30:15,856 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:30:15,858 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:30:15,874 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:30:15,876 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:30:15,890 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:30:15,892 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:30:15,902 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:30:15,902 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:30:15,908 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:30:15,910 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:30:15,924 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:30:15,926 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:15,941 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:30:15,943 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:15,957 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:30:15,960 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:15,974 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:15,976 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:15,990 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:15,992 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,008 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,010 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,025 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,027 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,041 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,044 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,058 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,061 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,075 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,077 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,091 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,093 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,108 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,110 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,127 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,129 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,145 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,147 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,166 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,168 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,183 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,185 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,199 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,202 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,216 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,218 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,233 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,236 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,250 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:30:16,252 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:30:16,269 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:30:16,283 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:30:16,298 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:30:16,313 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:30:16,330 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:30:16,360 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03_align.nc INFO 2025-06-26 10:30:16,404 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:30:16,406 process.py resample():273 [1] Resampling steps for 2005.014.03 INFO 2025-06-26 10:30:16,407 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:30:16,428 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03_align.nc mission netCDF file INFO 2025-06-26 10:30:16,433 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03_align.nc mission netCDF file INFO 2025-06-26 10:30:16,435 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-14T09:26:06.252188416 to 2005-01-14T10:01:37.646177792 (0 days 00:00:00.139990528 before mission_end) INFO 2025-06-26 10:30:16,436 resample.py get_mission_start_end():1145 [1] hs2 : 2005-01-14T09:25:50.293281536 to 2005-01-14T10:01:37.576182656 (0 days 00:00:00.209985664 before mission_end) INFO 2025-06-26 10:30:16,437 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-01-14T09:26:04.502308096 to 2005-01-14T10:01:37.686175104 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 10:30:16,439 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-01-14T09:25:54.303006848 to 2005-01-14T10:01:37.756170240 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 10:30:16,440 resample.py get_mission_start_end():1145 [1] isus : 2005-01-14T09:27:10.197807744 to 2005-01-14T10:01:29.156759552 (0 days 00:00:08.629408768 before mission_end) INFO 2025-06-26 10:30:16,442 resample.py get_mission_start_end():1145 [1] biolume : 2005-01-14T09:25:45.093603584 to 2005-01-14T10:01:36.896194944 (0 days 00:00:00.889973376 before mission_end) INFO 2025-06-26 10:30:16,443 resample.py get_mission_start_end():1145 [1] tailcone : 2005-01-14T09:25:46.803520640 to 2005-01-14T10:01:37.786168320 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:30:16,444 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03_align.nc mission netCDF file INFO 2025-06-26 10:30:16,445 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,493 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,504 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,515 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,526 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,537 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,548 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,558 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,568 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,578 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,587 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,596 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,605 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,614 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,623 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,632 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,641 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,651 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,662 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,674 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,684 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,695 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,705 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,714 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,722 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,731 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,740 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,752 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:30:16,853 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03_1S.nc INFO 2025-06-26 10:30:18,207 create_products.py gulper_odv():401 [1] No gulper times found for 2005.014.03 INFO 2025-06-26 10:30:18,208 process.py archive():337 [1] Archiving steps for 2005.014.03 INFO 2025-06-26 10:30:18,208 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03, BASE_PATH = /data/auv_data INFO 2025-06-26 10:30:18,208 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:30:18,209 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.014.03_1S.nc INFO 2025-06-26 10:30:18,219 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:30:18,220 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.014.03_cal.nc INFO 2025-06-26 10:30:18,236 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:30:18,236 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.014.03_align.nc INFO 2025-06-26 10:30:18,254 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:30:18,264 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.03 done. INFO 2025-06-26 10:30:18,273 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.03 done. INFO 2025-06-26 10:30:18,279 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.03 done. INFO 2025-06-26 10:30:18,287 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.03 done. INFO 2025-06-26 10:30:18,299 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.03 done. INFO 2025-06-26 10:30:18,303 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.03 done. INFO 2025-06-26 10:30:18,310 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.03 done. INFO 2025-06-26 10:30:18,317 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.03 done. INFO 2025-06-26 10:30:18,328 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.03 done. INFO 2025-06-26 10:30:18,329 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:30:18,329 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.03/dorado_2005.014.03_processing.log /Volumes/AUVCTD/surveys/2005/netcdf