INFO 2025-06-26 10:29:29,897 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:29:29,897 process.py process_mission():434 [1] dorado_info[mission]["comment"] = BIOLUME night missions, touched bottom on mission .00 - ctdToUse = ctd1 INFO 2025-06-26 10:29:29,897 process.py process_mission():449 [1] Processing BIOLUME mission 2005.014.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:29:29,897 process.py download_process():165 [1] Download and processing steps for 2005.014.00 INFO 2025-06-26 10:29:29,897 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005014/2005.014.00 INFO 2025-06-26 10:29:29,898 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005014/2005.014.00 to /data/auv_data/dorado/missionlogs/2005.014.00 INFO 2025-06-26 10:29:30,076 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.014.00 INFO 2025-06-26 10:29:30,076 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.00/ctdDriver.log (1558259 bytes) INFO 2025-06-26 10:29:30,196 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.00/ctdDriver2.log (1561861 bytes) INFO 2025-06-26 10:29:30,314 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.00/gps.log (24116 bytes) INFO 2025-06-26 10:29:30,324 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.00/hydroscatlog.log (1067834 bytes) INFO 2025-06-26 10:29:30,454 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.00/navigation.log (5228470 bytes) INFO 2025-06-26 10:29:30,828 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.00/isuslog.log (18421 bytes) INFO 2025-06-26 10:29:30,834 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.014.00/isuslog.log: [1] INFO 2025-06-26 10:29:30,835 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.00/parosci.log (1045958 bytes) INFO 2025-06-26 10:29:30,931 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.00/tailCone.log (1064971 bytes) INFO 2025-06-26 10:29:31,070 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.014.00/biolume.log (1213804 bytes) INFO 2025-06-26 10:29:31,190 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:29:31,257 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.18 seconds WARNING 2025-06-26 10:29:31,257 process.py download_process():196 [1] No lopc.bin file for 2005.014.00 INFO 2025-06-26 10:29:31,257 process.py calibrate():227 [1] Calibration steps for 2005.014.00 INFO 2025-06-26 10:29:31,341 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:29:31,343 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:29:32,826 calibrate.py _nudge_pos():1806 [1] 177: 0.190 -0.0002565 -0.0002037 1474 4.91 -7.737 -7.687 2005-01-14T01:32:18.839599616 INFO 2025-06-26 10:29:33,554 calibrate.py _nudge_pos():1806 [1] 256: 0.200 -0.0053188 -0.0004499 11909 39.69 -19.856 -2.100 2005-01-14T02:13:18.831078528 INFO 2025-06-26 10:29:34,043 calibrate.py _nudge_pos():1806 [1] 308: 0.020 0.0030840 0.0067655 7275 24.25 18.848 51.704 2005-01-14T02:38:25.037896448 INFO 2025-06-26 10:29:34,183 calibrate.py _nudge_pos():1862 [1] 301: - - - 3 0.01 - - INFO 2025-06-26 10:29:34,183 calibrate.py _nudge_pos():1868 [1] Points in final series = 21977 WARNING 2025-06-26 10:29:34,203 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 10:29:34,384 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:29:34,564 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:29:34,697 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:29:34,699 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.014.00/ctd1.nc INFO 2025-06-26 10:29:34,700 calibrate.py _range_qc_combined_nc():898 [1] Setting 30 ctd1_salinity values to NaN INFO 2025-06-26 10:29:34,700 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:29:34,700 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:29:34,865 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 15 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:29:35,000 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 15 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:29:35,002 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.014.00/ctd2.nc INFO 2025-06-26 10:29:35,004 calibrate.py _range_qc_combined_nc():898 [1] Setting 34 ctd2_salinity values to NaN INFO 2025-06-26 10:29:35,004 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:29:35,004 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:29:35,042 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:29:35,230 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [253560 253561] INFO 2025-06-26 10:29:35,270 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:29:35,276 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:29:35,276 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.014.00 ERROR 2025-06-26 10:29:35,276 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.014.00 INFO 2025-06-26 10:29:35,297 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00_cal.nc INFO 2025-06-26 10:29:35,347 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:29:35,351 process.py align():251 [1] Alignment steps for 2005.014.00 INFO 2025-06-26 10:29:35,375 align.py process_cal():139 [1] Processing dorado_2005.014.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.014.00 INFO 2025-06-26 10:29:35,385 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:29:35,387 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:29:35,410 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:29:35,413 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:29:35,435 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:29:35,437 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:29:35,449 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:29:35,450 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:29:35,458 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:29:35,460 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:29:35,482 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:29:35,484 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,505 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:29:35,508 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,528 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:29:35,531 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,551 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,553 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,573 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,575 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,595 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,598 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,618 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,620 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,640 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,642 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,663 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,665 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,685 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,688 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,708 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,711 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,732 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,734 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,755 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,757 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,778 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,780 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,802 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,804 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,826 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,828 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,849 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,852 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,873 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,875 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,896 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,899 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,920 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.014.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:35,922 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:35,948 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:29:35,966 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:29:35,984 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:29:36,004 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:29:36,026 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 10:29:36,045 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00_align.nc INFO 2025-06-26 10:29:36,097 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:29:36,099 process.py resample():273 [1] Resampling steps for 2005.014.00 INFO 2025-06-26 10:29:36,099 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:29:36,122 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00_align.nc mission netCDF file INFO 2025-06-26 10:29:36,127 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00_align.nc mission netCDF file INFO 2025-06-26 10:29:36,128 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-14T01:24:50.640303360 to 2005-01-14T02:38:39.666894208 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 10:29:36,129 resample.py get_mission_start_end():1145 [1] hs2 : 2005-01-14T01:24:32.621537664 to 2005-01-14T02:38:39.686892800 (0 days 00:00:00.029997952 before mission_end) INFO 2025-06-26 10:29:36,131 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-01-14T01:24:54.970006656 to 2005-01-14T02:38:39.586899712 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 10:29:36,132 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-01-14T01:24:44.650713728 to 2005-01-14T02:38:39.536903168 (0 days 00:00:00.179987584 before mission_end) INFO 2025-06-26 10:29:36,133 resample.py get_mission_start_end():1145 [1] isus : 2005-01-14T01:26:01.295463040 to 2005-01-14T02:38:37.527040768 (0 days 00:00:02.189849984 before mission_end) INFO 2025-06-26 10:29:36,135 resample.py get_mission_start_end():1145 [1] biolume : 2005-01-14T01:24:27.681841792 to 2005-01-14T02:38:38.286954368 (0 days 00:00:01.429936384 before mission_end) INFO 2025-06-26 10:29:36,136 resample.py get_mission_start_end():1145 [1] tailcone : 2005-01-14T01:24:28.081848576 to 2005-01-14T02:38:39.716890752 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:29:36,136 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00_align.nc mission netCDF file INFO 2025-06-26 10:29:36,137 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,207 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,221 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,235 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,249 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,263 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,276 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,290 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,303 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,314 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,326 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,338 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,349 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,361 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,372 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,384 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,395 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,409 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,422 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,435 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,448 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,461 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,474 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,483 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,491 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,500 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,509 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,524 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:36,641 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00_1S.nc INFO 2025-06-26 10:29:38,327 create_products.py gulper_odv():401 [1] No gulper times found for 2005.014.00 INFO 2025-06-26 10:29:38,327 process.py archive():337 [1] Archiving steps for 2005.014.00 INFO 2025-06-26 10:29:38,327 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:29:38,327 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:29:38,328 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.014.00_1S.nc INFO 2025-06-26 10:29:38,338 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:29:38,339 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.014.00_cal.nc INFO 2025-06-26 10:29:38,362 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:29:38,363 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.014.00_align.nc INFO 2025-06-26 10:29:38,387 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:29:38,398 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.00 done. INFO 2025-06-26 10:29:38,408 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.00 done. INFO 2025-06-26 10:29:38,412 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.00 done. INFO 2025-06-26 10:29:38,420 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.00 done. INFO 2025-06-26 10:29:38,439 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.00 done. INFO 2025-06-26 10:29:38,444 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.00 done. INFO 2025-06-26 10:29:38,451 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.00 done. INFO 2025-06-26 10:29:38,460 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.00 done. INFO 2025-06-26 10:29:38,475 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005014/2005.014.00 done. INFO 2025-06-26 10:29:38,475 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:29:38,475 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.014.00/dorado_2005.014.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf