INFO 2025-06-26 10:28:48,493 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:28:48,493 process.py process_mission():434 [1] dorado_info[mission]["comment"] = OFirst one portaled to predator with new directory structure - ctdToUse = ctd1 INFO 2025-06-26 10:28:48,493 process.py process_mission():449 [1] Processing OCCO mission 2005.010.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:28:48,493 process.py download_process():165 [1] Download and processing steps for 2005.010.00 INFO 2025-06-26 10:28:48,493 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005010/2005.010.00 INFO 2025-06-26 10:28:48,494 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005010/2005.010.00 to /data/auv_data/dorado/missionlogs/2005.010.00 INFO 2025-06-26 10:28:49,090 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.010.00 INFO 2025-06-26 10:28:49,090 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.010.00/ctdDriver.log (6377667 bytes) INFO 2025-06-26 10:28:49,678 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.010.00/ctdDriver2.log (6381357 bytes) INFO 2025-06-26 10:28:50,223 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.010.00/gps.log (61268 bytes) INFO 2025-06-26 10:28:50,241 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.010.00/hydroscatlog.log (4352354 bytes) INFO 2025-06-26 10:28:50,821 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.010.00/navigation.log (21383614 bytes) INFO 2025-06-26 10:28:52,542 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.010.00/isuslog.log (374389 bytes) INFO 2025-06-26 10:28:52,589 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.010.00/isuslog.log: [1 2 3 4 5 6 7] INFO 2025-06-26 10:28:52,591 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.010.00/parosci.log (4275926 bytes) INFO 2025-06-26 10:28:53,021 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.010.00/tailCone.log (4353787 bytes) INFO 2025-06-26 10:28:53,607 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.52 seconds WARNING 2025-06-26 10:28:53,607 process.py download_process():196 [1] No lopc.bin file for 2005.010.00 INFO 2025-06-26 10:28:53,607 process.py calibrate():227 [1] Calibration steps for 2005.010.00 INFO 2025-06-26 10:28:53,770 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:28:53,772 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:28:54,751 calibrate.py _nudge_pos():1806 [1] 116: 0.120 -0.0000596 -0.0001199 1141 3.81 -2.317 -5.826 2005-01-10T18:00:06.472793600 INFO 2025-06-26 10:28:55,538 calibrate.py _nudge_pos():1806 [1] 198: 0.120 -0.0012099 -0.0008456 5415 18.05 -9.948 -8.683 2005-01-10T18:19:30.473054208 INFO 2025-06-26 10:28:55,560 calibrate.py _nudge_pos():1806 [1] 200: 0.120 -0.0012090 -0.0008492 55 0.18 -996.667 -874.304 2005-01-10T18:19:42.472232064 INFO 2025-06-26 10:28:56,003 calibrate.py _nudge_pos():1806 [1] 244: 0.120 -0.0008631 0.0004213 4765 15.88 -8.066 4.916 2005-01-10T18:36:18.474001408 INFO 2025-06-26 10:28:56,490 calibrate.py _nudge_pos():1806 [1] 293: 0.120 -0.0041255 0.0005257 8219 27.40 -22.339 3.556 2005-01-10T19:04:30.468091904 INFO 2025-06-26 10:28:56,951 calibrate.py _nudge_pos():1806 [1] 339: 0.130 -0.0012814 -0.0010907 6405 21.35 -8.907 -9.468 2005-01-10T19:26:36.467254656 INFO 2025-06-26 10:28:56,983 calibrate.py _nudge_pos():1806 [1] 342: 0.130 -0.0011667 -0.0010546 25 0.08 -2164.033 -2442.890 2005-01-10T19:26:43.466775168 INFO 2025-06-26 10:28:57,453 calibrate.py _nudge_pos():1806 [1] 389: 0.120 -0.0008185 0.0004529 4325 14.41 -8.427 5.822 2005-01-10T19:41:54.474366848 INFO 2025-06-26 10:28:57,957 calibrate.py _nudge_pos():1806 [1] 437: 0.130 -0.0041029 0.0004481 8135 27.11 -22.448 3.063 2005-01-10T20:09:48.469690368 INFO 2025-06-26 10:28:58,420 calibrate.py _nudge_pos():1806 [1] 483: 0.130 -0.0013904 -0.0008556 6435 21.45 -9.619 -7.392 2005-01-10T20:32:00.468442240 INFO 2025-06-26 10:28:58,945 calibrate.py _nudge_pos():1806 [1] 535: 0.130 -0.0008080 0.0004904 4275 14.25 -8.416 6.379 2005-01-10T20:47:06.466376960 INFO 2025-06-26 10:28:59,396 calibrate.py _nudge_pos():1806 [1] 581: 0.130 -0.0041873 0.0005972 7995 26.65 -23.311 4.153 2005-01-10T21:14:30.473754880 INFO 2025-06-26 10:28:59,879 calibrate.py _nudge_pos():1806 [1] 628: 0.130 -0.0012638 -0.0008873 6670 22.23 -8.436 -7.396 2005-01-10T21:37:30.469218688 INFO 2025-06-26 10:29:00,376 calibrate.py _nudge_pos():1806 [1] 675: 0.130 -0.0008001 0.0004591 4145 13.81 -8.595 6.158 2005-01-10T21:52:05.469277184 INFO 2025-06-26 10:29:00,875 calibrate.py _nudge_pos():1806 [1] 724: 0.140 -0.0047631 0.0003369 8015 26.71 -26.451 2.337 2005-01-10T22:19:36.466176000 INFO 2025-06-26 10:29:01,445 calibrate.py _nudge_pos():1806 [1] 778: 0.120 -0.0012316 -0.0009196 6425 21.41 -8.534 -7.958 2005-01-10T22:41:54.474516096 INFO 2025-06-26 10:29:01,546 calibrate.py _nudge_pos():1806 [1] 788: 0.130 -0.0000005 0.0000184 40 0.13 -0.567 26.251 2005-01-10T22:42:11.473351680 INFO 2025-06-26 10:29:01,950 calibrate.py _nudge_pos():1806 [1] 830: 0.140 -0.0007874 0.0004563 4025 13.41 -8.711 6.304 2005-01-10T22:56:18.465328640 INFO 2025-06-26 10:29:01,970 calibrate.py _nudge_pos():1806 [1] 832: 0.130 -0.0005103 0.0001725 100 0.33 -229.363 96.814 2005-01-10T22:56:39.473889536 INFO 2025-06-26 10:29:02,034 calibrate.py _nudge_pos():1862 [1] 817: - - - 2 0.00 - - INFO 2025-06-26 10:29:02,034 calibrate.py _nudge_pos():1868 [1] Points in final series = 90600 WARNING 2025-06-26 10:29:02,106 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 10:29:02,768 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:29:03,435 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:29:03,981 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:29:03,983 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.010.00/ctd1.nc INFO 2025-06-26 10:29:03,984 calibrate.py _range_qc_combined_nc():898 [1] Setting 211 ctd1_salinity values to NaN INFO 2025-06-26 10:29:03,985 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:29:03,985 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:29:04,624 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 15 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:29:05,187 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 15 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:29:05,189 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.010.00/ctd2.nc INFO 2025-06-26 10:29:05,190 calibrate.py _range_qc_combined_nc():898 [1] Setting 206 ctd2_salinity values to NaN INFO 2025-06-26 10:29:05,190 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:29:05,190 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 10:29:05,758 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.010.00 ERROR 2025-06-26 10:29:05,758 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.010.00 ERROR 2025-06-26 10:29:05,758 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.010.00 INFO 2025-06-26 10:29:05,830 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00_cal.nc INFO 2025-06-26 10:29:05,912 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:29:05,915 process.py align():251 [1] Alignment steps for 2005.010.00 INFO 2025-06-26 10:29:05,941 align.py process_cal():139 [1] Processing dorado_2005.010.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.010.00 INFO 2025-06-26 10:29:05,969 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:29:05,972 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:29:06,043 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:29:06,048 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:29:06,113 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:29:06,117 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:29:06,156 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:29:06,156 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:29:06,182 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:29:06,186 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:29:06,249 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:29:06,253 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,312 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:29:06,316 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,374 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:29:06,378 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,436 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:06,440 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,497 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:06,501 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,558 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:06,561 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,620 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:06,624 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,681 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:06,685 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,743 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:06,747 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,806 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:06,810 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,867 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:06,871 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,926 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:06,930 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:06,987 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:06,990 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:07,048 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:07,052 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:07,110 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:07,114 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:07,171 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:07,175 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:07,234 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:07,240 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:07,314 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:07,318 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:07,377 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:07,381 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:07,438 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.010.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:29:07,442 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:29:07,505 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 10:29:07,545 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 10:29:07,587 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 10:29:07,629 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:29:07,674 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00_align.nc INFO 2025-06-26 10:29:07,746 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:29:07,748 process.py resample():273 [1] Resampling steps for 2005.010.00 INFO 2025-06-26 10:29:07,748 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:29:07,772 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00_align.nc mission netCDF file INFO 2025-06-26 10:29:07,777 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00_align.nc mission netCDF file INFO 2025-06-26 10:29:07,779 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-10T17:54:45.084810240 to 2005-01-10T22:56:45.873451264 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:29:07,780 resample.py get_mission_start_end():1145 [1] hs2 : 2005-01-10T17:54:27.076043904 to 2005-01-10T22:56:45.873451264 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:29:07,782 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-01-10T17:54:49.464510208 to 2005-01-10T22:56:45.763458688 (0 days 00:00:00.169988480 before mission_end) INFO 2025-06-26 10:29:07,784 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-01-10T17:54:39.105219840 to 2005-01-10T22:56:45.933447168 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:29:07,785 resample.py get_mission_start_end():1145 [1] isus : 2005-01-10T17:55:24.262126464 to 2005-01-10T22:56:45.233495040 (0 days 00:00:00.699952128 before mission_end) INFO 2025-06-26 10:29:07,787 resample.py get_mission_start_end():1145 [1] tailcone : 2005-01-10T17:54:23.476290432 to 2005-01-10T22:56:45.903449088 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 10:29:07,787 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00_align.nc mission netCDF file INFO 2025-06-26 10:29:07,788 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:07,992 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,030 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,065 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,101 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,132 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,164 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,195 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,224 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,252 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,282 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,312 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,340 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,368 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,468 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,496 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,523 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,553 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,582 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,616 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,645 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,674 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,703 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,718 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,731 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,743 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,778 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:29:08,972 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00_1S.nc INFO 2025-06-26 10:29:10,679 create_products.py gulper_odv():401 [1] No gulper times found for 2005.010.00 INFO 2025-06-26 10:29:10,679 process.py archive():337 [1] Archiving steps for 2005.010.00 INFO 2025-06-26 10:29:10,679 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:29:10,679 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:29:10,681 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.010.00_1S.nc INFO 2025-06-26 10:29:10,699 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:29:10,700 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.010.00_cal.nc INFO 2025-06-26 10:29:10,789 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:29:10,816 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.010.00_align.nc INFO 2025-06-26 10:29:10,927 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:29:10,956 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005010/2005.010.00 done. INFO 2025-06-26 10:29:10,985 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005010/2005.010.00 done. INFO 2025-06-26 10:29:10,991 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005010/2005.010.00 done. INFO 2025-06-26 10:29:11,013 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005010/2005.010.00 done. INFO 2025-06-26 10:29:11,084 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005010/2005.010.00 done. INFO 2025-06-26 10:29:11,091 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005010/2005.010.00 done. INFO 2025-06-26 10:29:11,108 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005010/2005.010.00 done. INFO 2025-06-26 10:29:11,133 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005010/2005.010.00 done. INFO 2025-06-26 10:29:11,133 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:29:11,134 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.010.00/dorado_2005.010.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf