INFO 2025-06-26 10:28:25,842 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:28:25,842 process.py process_mission():434 [1] dorado_info[mission]["comment"] = One mission on Elkhorn tidal plume race track - ctdToUse = ctd1 INFO 2025-06-26 10:28:25,842 process.py process_mission():449 [1] Processing OCCO mission 2005.006.21 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:28:25,842 process.py download_process():165 [1] Download and processing steps for 2005.006.21 INFO 2025-06-26 10:28:25,842 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005006/2005.006.21 INFO 2025-06-26 10:28:25,843 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005006/2005.006.21 to /data/auv_data/dorado/missionlogs/2005.006.21 INFO 2025-06-26 10:28:26,327 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.006.21 INFO 2025-06-26 10:28:26,327 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.006.21/ctdDriver.log (6465579 bytes) INFO 2025-06-26 10:28:26,798 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.006.21/ctdDriver2.log (6485461 bytes) INFO 2025-06-26 10:28:27,268 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.006.21/gps.log (61052 bytes) INFO 2025-06-26 10:28:27,282 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.006.21/hydroscatlog.log (4422434 bytes) INFO 2025-06-26 10:28:27,789 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.006.21/navigation.log (21732894 bytes) INFO 2025-06-26 10:28:29,346 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.006.21/isuslog.log (380213 bytes) INFO 2025-06-26 10:28:29,386 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.006.21/parosci.log (4336214 bytes) INFO 2025-06-26 10:28:29,783 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.006.21/tailCone.log (4424731 bytes) INFO 2025-06-26 10:28:30,345 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.02 seconds WARNING 2025-06-26 10:28:30,349 process.py download_process():196 [1] No lopc.bin file for 2005.006.21 INFO 2025-06-26 10:28:30,349 process.py calibrate():227 [1] Calibration steps for 2005.006.21 INFO 2025-06-26 10:28:30,661 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:28:30,663 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:28:31,698 calibrate.py _nudge_pos():1806 [1] 122: 0.070 -0.0010418 -0.0008744 6059 20.20 -7.652 -8.022 2005-01-06T19:10:25.262171776 INFO 2025-06-26 10:28:32,503 calibrate.py _nudge_pos():1806 [1] 205: 0.070 -0.0012595 -0.0007981 5735 19.11 -9.778 -7.737 2005-01-06T19:30:54.267979136 INFO 2025-06-26 10:28:32,987 calibrate.py _nudge_pos():1806 [1] 251: 0.070 -0.0009282 0.0005312 4455 14.85 -9.278 6.630 2005-01-06T19:46:30.263859072 INFO 2025-06-26 10:28:33,489 calibrate.py _nudge_pos():1806 [1] 302: 0.080 -0.0050595 0.0008221 7880 26.26 -28.578 5.800 2005-01-06T20:13:36.262470528 INFO 2025-06-26 10:28:33,947 calibrate.py _nudge_pos():1806 [1] 350: 0.060 -0.0012059 -0.0009292 6455 21.51 -8.317 -8.003 2005-01-06T20:35:54.270810624 INFO 2025-06-26 10:28:34,443 calibrate.py _nudge_pos():1806 [1] 398: 0.070 -0.0000167 -0.0000000 35 0.11 -21.813 -0.059 2005-01-06T20:36:48.267111808 INFO 2025-06-26 10:28:34,656 calibrate.py _nudge_pos():1806 [1] 413: 0.070 -0.0009859 0.0005506 4670 15.56 -9.400 6.556 2005-01-06T20:52:36.262169600 INFO 2025-06-26 10:28:35,141 calibrate.py _nudge_pos():1806 [1] 459: 0.060 -0.0049892 0.0006090 7935 26.45 -27.985 4.267 2005-01-06T21:19:48.270369280 INFO 2025-06-26 10:28:35,204 calibrate.py _nudge_pos():1806 [1] 465: 0.070 -0.0052893 0.0006030 45 0.15 -5350.241 761.834 2005-01-06T21:20:02.269410432 INFO 2025-06-26 10:28:35,675 calibrate.py _nudge_pos():1806 [1] 508: 0.070 -0.0012334 -0.0009152 6410 21.36 -8.566 -7.938 2005-01-06T21:42:06.268710144 INFO 2025-06-26 10:28:36,142 calibrate.py _nudge_pos():1806 [1] 551: 0.070 -0.0000535 0.0000184 255 0.85 -9.383 4.024 2005-01-06T21:43:39.262339584 INFO 2025-06-26 10:28:36,199 calibrate.py _nudge_pos():1806 [1] 556: 0.060 -0.0000961 0.0000513 35 0.11 -125.845 83.813 2005-01-06T21:43:50.271585408 INFO 2025-06-26 10:28:36,266 calibrate.py _nudge_pos():1806 [1] 562: 0.070 -0.0007291 0.0004717 4163 13.88 -7.795 6.297 2005-01-06T21:57:48.264178944 INFO 2025-06-26 10:28:36,778 calibrate.py _nudge_pos():1806 [1] 607: 0.070 -0.0049877 0.0005153 8060 26.86 -27.543 3.554 2005-01-06T22:25:24.270734848 INFO 2025-06-26 10:28:37,251 calibrate.py _nudge_pos():1806 [1] 653: 0.070 -0.0011367 -0.0010119 6525 21.75 -7.756 -8.622 2005-01-06T22:47:54.268253568 INFO 2025-06-26 10:28:37,763 calibrate.py _nudge_pos():1806 [1] 704: 0.070 -0.0000435 -0.0000029 210 0.70 -9.268 -0.758 2005-01-06T22:49:26.271950976 INFO 2025-06-26 10:28:37,948 calibrate.py _nudge_pos():1806 [1] 723: 0.080 -0.0007666 0.0004594 4280 14.26 -7.976 5.969 2005-01-06T23:04:00.262078464 INFO 2025-06-26 10:28:38,420 calibrate.py _nudge_pos():1806 [1] 769: 0.070 -0.0051651 0.0004420 8085 26.95 -28.435 3.039 2005-01-06T23:31:42.268223232 INFO 2025-06-26 10:28:38,955 calibrate.py _nudge_pos():1806 [1] 818: 0.070 -0.0012438 -0.0010653 6810 22.70 -8.131 -8.697 2005-01-06T23:55:12.271631488 INFO 2025-06-26 10:28:39,135 calibrate.py _nudge_pos():1862 [1] 816: - - - 1 0.00 - - INFO 2025-06-26 10:28:39,135 calibrate.py _nudge_pos():1868 [1] Points in final series = 92080 WARNING 2025-06-26 10:28:39,211 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 10:28:39,913 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:28:40,627 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 69 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:28:41,175 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 69 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:28:41,177 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.006.21/ctd1.nc INFO 2025-06-26 10:28:41,178 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:28:41,179 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:28:41,179 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:28:41,839 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 12 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:28:42,396 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 12 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:28:42,399 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.006.21/ctd2.nc INFO 2025-06-26 10:28:42,400 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:28:42,401 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:28:42,401 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 10:28:42,417 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.006.21 ERROR 2025-06-26 10:28:42,417 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.006.21 ERROR 2025-06-26 10:28:42,418 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.006.21 INFO 2025-06-26 10:28:42,493 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21_cal.nc INFO 2025-06-26 10:28:42,591 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:28:42,595 process.py align():251 [1] Alignment steps for 2005.006.21 INFO 2025-06-26 10:28:42,623 align.py process_cal():139 [1] Processing dorado_2005.006.21_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.006.21 INFO 2025-06-26 10:28:42,652 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:28:42,656 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:28:42,730 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:28:42,736 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:28:42,805 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:28:42,810 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:28:42,851 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:28:42,851 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:28:42,881 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:28:42,886 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:28:42,953 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:28:42,958 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,019 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:28:43,023 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,083 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:28:43,087 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,152 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,161 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,225 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,229 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,293 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,299 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,367 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,372 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,437 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,441 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,503 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,508 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,570 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,575 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,636 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,641 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,703 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,709 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,780 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,787 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,869 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,874 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:43,943 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:43,950 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:44,015 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:44,020 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:44,084 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:44,089 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:44,155 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:44,162 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:44,230 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:44,235 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:44,307 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.006.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:28:44,314 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:28:44,426 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 10:28:44,477 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 10:28:44,525 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 10:28:44,573 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:28:44,649 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21_align.nc INFO 2025-06-26 10:28:44,737 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:28:44,740 process.py resample():273 [1] Resampling steps for 2005.006.21 INFO 2025-06-26 10:28:44,741 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:28:44,773 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21_align.nc mission netCDF file INFO 2025-06-26 10:28:44,780 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21_align.nc mission netCDF file INFO 2025-06-26 10:28:44,782 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-06T18:48:33.082062208 to 2005-01-06T23:55:29.470453248 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 10:28:44,784 resample.py get_mission_start_end():1145 [1] hs2 : 2005-01-06T18:48:17.903102208 to 2005-01-06T23:55:29.390458880 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 10:28:44,787 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-01-06T18:49:22.818655232 to 2005-01-06T23:55:29.370460032 (0 days 00:00:00.129991296 before mission_end) INFO 2025-06-26 10:28:44,788 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-01-06T18:48:26.342524032 to 2005-01-06T23:55:29.420456704 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 10:28:44,790 resample.py get_mission_start_end():1145 [1] isus : 2005-01-06T18:49:29.258214016 to 2005-01-06T23:55:28.130545152 (0 days 00:00:01.369906176 before mission_end) INFO 2025-06-26 10:28:44,792 resample.py get_mission_start_end():1145 [1] tailcone : 2005-01-06T18:48:12.343483008 to 2005-01-06T23:55:29.500451328 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:28:44,793 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21_align.nc mission netCDF file INFO 2025-06-26 10:28:44,794 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,020 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,063 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,104 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,146 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,184 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,222 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,257 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,292 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,324 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,355 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,387 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,419 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,451 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,482 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,515 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,549 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,586 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,647 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,682 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,719 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,756 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,793 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,812 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,828 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,843 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:45,882 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:28:46,092 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21_1S.nc INFO 2025-06-26 10:28:48,063 create_products.py gulper_odv():401 [1] No gulper times found for 2005.006.21 INFO 2025-06-26 10:28:48,063 process.py archive():337 [1] Archiving steps for 2005.006.21 INFO 2025-06-26 10:28:48,064 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21, BASE_PATH = /data/auv_data INFO 2025-06-26 10:28:48,065 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:28:48,066 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.006.21_1S.nc INFO 2025-06-26 10:28:48,085 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:28:48,086 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.006.21_cal.nc INFO 2025-06-26 10:28:48,171 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:28:48,172 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.006.21_align.nc INFO 2025-06-26 10:28:48,255 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:28:48,283 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005006/2005.006.21 done. INFO 2025-06-26 10:28:48,309 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005006/2005.006.21 done. INFO 2025-06-26 10:28:48,326 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005006/2005.006.21 done. INFO 2025-06-26 10:28:48,345 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005006/2005.006.21 done. INFO 2025-06-26 10:28:48,412 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005006/2005.006.21 done. INFO 2025-06-26 10:28:48,418 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005006/2005.006.21 done. INFO 2025-06-26 10:28:48,437 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005006/2005.006.21 done. INFO 2025-06-26 10:28:48,459 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005006/2005.006.21 done. INFO 2025-06-26 10:28:48,460 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:28:48,460 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.006.21/dorado_2005.006.21_processing.log /Volumes/AUVCTD/surveys/2005/netcdf