INFO 2025-06-26 06:12:46,012 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:12:46,012 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 8/22/05 - ctdToUse = ctd1 INFO 2025-06-26 06:12:46,012 process.py process_mission():449 [1] Processing BIOLUME mission 2004.352.01 by user docker_user on host 671049448ece INFO 2025-06-26 06:12:46,012 process.py download_process():165 [1] Download and processing steps for 2004.352.01 INFO 2025-06-26 06:12:46,012 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004352/2004.352.01 INFO 2025-06-26 06:12:46,012 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004352/2004.352.01 to /data/auv_data/dorado/missionlogs/2004.352.01 INFO 2025-06-26 06:12:47,591 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.352.01 INFO 2025-06-26 06:12:47,592 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.352.01/ctdDriver.log (2645763 bytes) INFO 2025-06-26 06:12:47,790 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.352.01/ctdDriver2.log (2648133 bytes) INFO 2025-06-26 06:12:48,001 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2004.352.01/ctdDriver2.log: [14288] INFO 2025-06-26 06:12:48,010 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.352.01/gps.log (31748 bytes) INFO 2025-06-26 06:12:48,023 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.352.01/hydroscatlog.log (1807394 bytes) INFO 2025-06-26 06:12:48,272 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.352.01/navigation.log (5861863 bytes) INFO 2025-06-26 06:12:48,703 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.352.01/isuslog.log (154581 bytes) INFO 2025-06-26 06:12:48,723 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.352.01/parosci.log (1808630 bytes) INFO 2025-06-26 06:12:48,883 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.352.01/tailCone.log (1808299 bytes) INFO 2025-06-26 06:12:49,114 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.352.01/biolume.log (2052652 bytes) INFO 2025-06-26 06:12:49,315 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 06:12:49,426 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.83 seconds WARNING 2025-06-26 06:12:49,426 process.py download_process():196 [1] No lopc.bin file for 2004.352.01 INFO 2025-06-26 06:12:49,426 process.py calibrate():227 [1] Calibration steps for 2004.352.01 INFO 2025-06-26 06:12:49,526 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:12:49,528 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:12:50,118 calibrate.py _nudge_pos():1806 [1] 81: 0.160 0.0006991 0.0005424 9646 32.16 3.230 3.125 2004-12-17T07:11:36.663661696 INFO 2025-06-26 06:12:50,686 calibrate.py _nudge_pos():1806 [1] 136: 0.160 0.0005718 0.0004588 9990 33.30 2.553 2.553 2004-12-17T07:45:48.663090176 INFO 2025-06-26 06:12:51,188 calibrate.py _nudge_pos():1806 [1] 190: 0.140 0.0006804 0.0004567 10210 34.03 2.973 2.487 2004-12-17T08:20:43.669572352 INFO 2025-06-26 06:12:51,857 calibrate.py _nudge_pos():1806 [1] 261: 0.150 -0.0005430 -0.0003145 2555 8.51 -9.485 -6.845 2004-12-17T08:30:24.669771136 INFO 2025-06-26 06:12:52,891 calibrate.py _nudge_pos():1806 [1] 374: 0.140 0.0001683 0.0001697 3160 10.53 2.377 2.986 2004-12-17T08:42:48.668803712 INFO 2025-06-26 06:12:53,405 calibrate.py _nudge_pos():1862 [1] 408: - - - 1 0.00 - - INFO 2025-06-26 06:12:53,406 calibrate.py _nudge_pos():1868 [1] Points in final series = 37568 WARNING 2025-06-26 06:12:53,438 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:12:53,718 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:12:54,002 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 20 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:12:54,232 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 20 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:12:54,234 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.352.01/ctd1.nc INFO 2025-06-26 06:12:54,235 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 06:12:54,236 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:12:54,236 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:12:55,883 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 12 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:12:56,109 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 12 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:12:56,111 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.352.01/ctd2.nc INFO 2025-06-26 06:12:56,113 calibrate.py _range_qc_combined_nc():898 [1] Setting 443 ctd2_salinity values to NaN INFO 2025-06-26 06:12:56,113 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:12:56,113 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 06:12:56,129 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 06:12:56,518 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [371640 371641] INFO 2025-06-26 06:12:56,583 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 06:12:56,589 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 06:12:56,589 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.352.01 ERROR 2025-06-26 06:12:56,589 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.352.01 INFO 2025-06-26 06:12:56,626 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01_cal.nc INFO 2025-06-26 06:12:57,738 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:12:57,742 process.py align():251 [1] Alignment steps for 2004.352.01 INFO 2025-06-26 06:12:57,766 align.py process_cal():139 [1] Processing dorado_2004.352.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.352.01 INFO 2025-06-26 06:12:57,780 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:12:57,783 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:12:57,816 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:12:57,819 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:12:57,850 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:12:57,853 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:12:57,872 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:12:57,872 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:12:57,885 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:12:57,888 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:12:57,919 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:12:57,922 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:57,950 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:12:57,952 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:57,980 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:12:57,983 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,012 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,015 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,050 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,053 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,087 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,089 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,119 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,121 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,151 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,155 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,183 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,186 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,217 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,221 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,252 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,254 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,282 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,285 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,314 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,316 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,345 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,348 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,379 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,382 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,412 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,415 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,444 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,447 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,476 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,479 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,509 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,511 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,541 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.352.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:12:58,543 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:12:58,578 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:12:58,602 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:12:58,626 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:12:58,652 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 06:12:58,679 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:12:58,703 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01_align.nc INFO 2025-06-26 06:12:58,760 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:12:58,762 process.py resample():273 [1] Resampling steps for 2004.352.01 INFO 2025-06-26 06:12:58,763 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:12:58,786 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01_align.nc mission netCDF file INFO 2025-06-26 06:12:58,791 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01_align.nc mission netCDF file INFO 2025-06-26 06:12:58,792 resample.py get_mission_start_end():1145 [1] navigation: 2004-12-17T06:38:28.469862272 to 2004-12-17T08:43:42.865091072 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 06:12:58,794 resample.py get_mission_start_end():1145 [1] hs2 : 2004-12-17T06:38:12.350966400 to 2004-12-17T08:43:42.705101952 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 06:12:58,795 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-12-17T06:38:28.779841152 to 2004-12-17T08:43:42.825093760 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 06:12:58,797 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-12-17T06:38:20.300422016 to 2004-12-17T08:43:42.885089664 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:12:58,798 resample.py get_mission_start_end():1145 [1] isus : 2004-12-17T06:39:23.906064768 to 2004-12-17T08:43:41.245202048 (0 days 00:00:01.639887616 before mission_end) INFO 2025-06-26 06:12:58,799 resample.py get_mission_start_end():1145 [1] biolume : 2004-12-17T06:38:07.301278080 to 2004-12-17T08:43:41.645140352 (0 days 00:00:01.239949312 before mission_end) INFO 2025-06-26 06:12:58,800 resample.py get_mission_start_end():1145 [1] tailcone : 2004-12-17T06:38:09.431166592 to 2004-12-17T08:43:42.805095168 (0 days 00:00:00.079994496 before mission_end) INFO 2025-06-26 06:12:58,801 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01_align.nc mission netCDF file INFO 2025-06-26 06:12:58,802 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:58,901 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:58,920 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:58,938 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:58,956 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:58,974 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:58,991 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,008 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,024 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,039 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,054 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,069 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,084 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,100 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,115 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,130 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,146 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,163 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,180 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,197 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,213 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,230 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,247 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,258 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,268 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,278 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,289 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,307 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:12:59,442 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01_1S.nc INFO 2025-06-26 06:13:00,248 create_products.py gulper_odv():401 [1] No gulper times found for 2004.352.01 INFO 2025-06-26 06:13:00,248 process.py archive():337 [1] Archiving steps for 2004.352.01 INFO 2025-06-26 06:13:00,249 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01, BASE_PATH = /data/auv_data INFO 2025-06-26 06:13:00,249 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:13:00,250 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.352.01_1S.nc INFO 2025-06-26 06:13:00,265 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:13:00,266 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.352.01_cal.nc INFO 2025-06-26 06:13:00,304 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:13:00,305 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.352.01_align.nc INFO 2025-06-26 06:13:00,346 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:13:00,362 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004352/2004.352.01 done. INFO 2025-06-26 06:13:00,376 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004352/2004.352.01 done. INFO 2025-06-26 06:13:00,381 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004352/2004.352.01 done. INFO 2025-06-26 06:13:00,394 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004352/2004.352.01 done. INFO 2025-06-26 06:13:00,417 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004352/2004.352.01 done. INFO 2025-06-26 06:13:00,423 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004352/2004.352.01 done. INFO 2025-06-26 06:13:00,435 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004352/2004.352.01 done. INFO 2025-06-26 06:13:00,447 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004352/2004.352.01 done. INFO 2025-06-26 06:13:00,474 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004352/2004.352.01 done. INFO 2025-06-26 06:13:00,474 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:13:00,474 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.352.01/dorado_2004.352.01_processing.log /Volumes/AUVCTD/surveys/2004/netcdf