INFO 2025-06-26 06:10:59,696 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:10:59,696 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 8/22/05 - ctdToUse = ctd1 INFO 2025-06-26 06:10:59,697 process.py process_mission():449 [1] Processing OCCO mission 2004.345.08 by user docker_user on host 671049448ece INFO 2025-06-26 06:10:59,697 process.py download_process():165 [1] Download and processing steps for 2004.345.08 INFO 2025-06-26 06:10:59,697 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004345/2004.345.08 INFO 2025-06-26 06:10:59,697 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004345/2004.345.08 to /data/auv_data/dorado/missionlogs/2004.345.08 INFO 2025-06-26 06:11:00,116 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.345.08 INFO 2025-06-26 06:11:00,116 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.08/ctdDriver.log (59091 bytes) INFO 2025-06-26 06:11:00,129 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.08/ctdDriver2.log (61461 bytes) INFO 2025-06-26 06:11:00,143 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.08/gps.log (8780 bytes) INFO 2025-06-26 06:11:00,154 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.08/hydroscatlog.log (44234 bytes) INFO 2025-06-26 06:11:00,167 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.08/navigation.log (128395 bytes) INFO 2025-06-26 06:11:00,186 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.08/isuslog.log (2485 bytes) INFO 2025-06-26 06:11:00,191 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.08/parosci.log (44534 bytes) INFO 2025-06-26 06:11:00,199 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.08/tailCone.log (44395 bytes) INFO 2025-06-26 06:11:00,210 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.09 seconds WARNING 2025-06-26 06:11:00,210 process.py download_process():196 [1] No lopc.bin file for 2004.345.08 INFO 2025-06-26 06:11:00,211 process.py calibrate():227 [1] Calibration steps for 2004.345.08 INFO 2025-06-26 06:11:00,258 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:11:00,260 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:11:00,775 calibrate.py _nudge_pos():1806 [1] 73: 0.030 -0.0000448 0.0000048 385 1.28 -5.199 0.699 2004-12-10T23:11:23.388163072 INFO 2025-06-26 06:11:01,117 calibrate.py _nudge_pos():1862 [1] 88: - - - 2 0.00 - - INFO 2025-06-26 06:11:01,118 calibrate.py _nudge_pos():1868 [1] Points in final series = 815 WARNING 2025-06-26 06:11:01,123 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:11:01,145 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:11:01,172 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:11:01,181 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:11:01,182 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.345.08/ctd1.nc INFO 2025-06-26 06:11:01,183 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:11:01,183 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:11:01,184 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:11:01,205 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 11 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:11:01,214 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 11 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:11:01,215 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.345.08/ctd2.nc INFO 2025-06-26 06:11:01,217 calibrate.py _range_qc_combined_nc():898 [1] Setting 10 ctd2_salinity values to NaN INFO 2025-06-26 06:11:01,218 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:11:01,218 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 06:11:01,224 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.08 ERROR 2025-06-26 06:11:01,224 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.08 ERROR 2025-06-26 06:11:01,225 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.08 INFO 2025-06-26 06:11:01,228 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08_cal.nc INFO 2025-06-26 06:11:01,263 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:11:01,267 process.py align():251 [1] Alignment steps for 2004.345.08 INFO 2025-06-26 06:11:01,286 align.py process_cal():139 [1] Processing dorado_2004.345.08_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.345.08 INFO 2025-06-26 06:11:01,291 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:11:01,292 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:11:01,302 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:11:01,304 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:11:01,311 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:11:01,313 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:11:01,318 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:11:01,318 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:11:01,321 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:11:01,322 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:11:01,330 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:11:01,332 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,340 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:11:01,342 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,350 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:11:01,352 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,360 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,362 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,370 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,372 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,380 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,382 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,390 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,391 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,399 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,401 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,409 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,411 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,419 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,421 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,429 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,431 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,439 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,440 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,449 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,450 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:01,459 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,461 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:11:01,470 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,472 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:11:01,480 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,482 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:11:01,491 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,493 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:11:01,501 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,503 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:11:01,512 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,514 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:11:01,523 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:01,524 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:11:01,536 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:11:01,547 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:11:01,559 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:11:01,570 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:11:01,580 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08_align.nc INFO 2025-06-26 06:11:01,615 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:11:01,617 process.py resample():273 [1] Resampling steps for 2004.345.08 INFO 2025-06-26 06:11:01,618 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:11:01,635 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08_align.nc mission netCDF file INFO 2025-06-26 06:11:01,639 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08_align.nc mission netCDF file INFO 2025-06-26 06:11:01,640 resample.py get_mission_start_end():1145 [1] navigation: 2004-12-10T23:09:17.006820736 to 2004-12-10T23:11:59.795668864 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:11:01,642 resample.py get_mission_start_end():1145 [1] hs2 : 2004-12-10T23:08:59.358029824 to 2004-12-10T23:11:59.615681152 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 06:11:01,643 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-12-10T23:09:13.867035904 to 2004-12-10T23:11:59.595682560 (0 days 00:00:00.199986304 before mission_end) INFO 2025-06-26 06:11:01,644 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-12-10T23:09:06.927511168 to 2004-12-10T23:11:59.665677824 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 06:11:01,645 resample.py get_mission_start_end():1145 [1] isus : 2004-12-10T23:10:11.253104640 to 2004-12-10T23:11:58.805736832 (0 days 00:00:00.989932032 before mission_end) INFO 2025-06-26 06:11:01,646 resample.py get_mission_start_end():1145 [1] tailcone : 2004-12-10T23:08:56.858201088 to 2004-12-10T23:11:59.615681152 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 06:11:01,647 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08_align.nc mission netCDF file INFO 2025-06-26 06:11:01,647 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,675 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,683 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,691 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,699 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,707 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,715 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,723 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,730 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,737 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,743 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,750 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,756 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,763 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,769 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,776 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,782 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,790 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,798 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,806 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,814 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,821 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,829 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,837 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,845 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,853 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,861 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:01,949 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08_1S.nc INFO 2025-06-26 06:11:02,384 create_products.py gulper_odv():401 [1] No gulper times found for 2004.345.08 INFO 2025-06-26 06:11:02,384 process.py archive():337 [1] Archiving steps for 2004.345.08 INFO 2025-06-26 06:11:02,384 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08, BASE_PATH = /data/auv_data INFO 2025-06-26 06:11:02,384 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:11:02,385 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.08_1S.nc INFO 2025-06-26 06:11:02,394 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:11:02,394 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.08_cal.nc INFO 2025-06-26 06:11:02,403 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:11:02,403 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.08_align.nc INFO 2025-06-26 06:11:02,411 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:11:02,417 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.08 done. INFO 2025-06-26 06:11:02,421 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.08 done. INFO 2025-06-26 06:11:02,426 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.08 done. INFO 2025-06-26 06:11:02,431 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.08 done. INFO 2025-06-26 06:11:02,437 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.08 done. INFO 2025-06-26 06:11:02,441 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.08 done. INFO 2025-06-26 06:11:02,447 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.08 done. INFO 2025-06-26 06:11:02,452 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.08 done. INFO 2025-06-26 06:11:02,452 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:11:02,452 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.08/dorado_2004.345.08_processing.log /Volumes/AUVCTD/surveys/2004/netcdf