INFO 2025-06-26 06:10:56,920 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:10:56,920 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 8/22/05 - ctdToUse = ctd1 INFO 2025-06-26 06:10:56,920 process.py process_mission():449 [1] Processing OCCO mission 2004.345.07 by user docker_user on host 671049448ece INFO 2025-06-26 06:10:56,920 process.py download_process():165 [1] Download and processing steps for 2004.345.07 INFO 2025-06-26 06:10:56,920 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004345/2004.345.07 INFO 2025-06-26 06:10:56,921 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004345/2004.345.07 to /data/auv_data/dorado/missionlogs/2004.345.07 INFO 2025-06-26 06:10:57,291 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.345.07 INFO 2025-06-26 06:10:57,291 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.07/ctdDriver.log (57507 bytes) INFO 2025-06-26 06:10:57,303 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.07/ctdDriver2.log (59701 bytes) INFO 2025-06-26 06:10:57,313 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.07/gps.log (9428 bytes) INFO 2025-06-26 06:10:57,321 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.07/hydroscatlog.log (43094 bytes) INFO 2025-06-26 06:10:57,333 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.07/navigation.log (124495 bytes) INFO 2025-06-26 06:10:57,351 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.07/isuslog.log (2389 bytes) INFO 2025-06-26 06:10:57,355 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.07/parosci.log (43334 bytes) INFO 2025-06-26 06:10:57,362 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.07/tailCone.log (43531 bytes) INFO 2025-06-26 06:10:57,374 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.08 seconds WARNING 2025-06-26 06:10:57,374 process.py download_process():196 [1] No lopc.bin file for 2004.345.07 INFO 2025-06-26 06:10:57,374 process.py calibrate():227 [1] Calibration steps for 2004.345.07 INFO 2025-06-26 06:10:57,426 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:10:57,428 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:10:57,947 calibrate.py _nudge_pos():1806 [1] 73: 0.120 0.0000130 0.0000155 15 0.05 41.387 61.353 2004-12-10T23:06:04.310021376 INFO 2025-06-26 06:10:58,085 calibrate.py _nudge_pos():1806 [1] 88: 0.110 -0.0000092 0.0000108 305 1.01 -1.348 1.983 2004-12-10T23:07:19.304883712 INFO 2025-06-26 06:10:58,371 calibrate.py _nudge_pos():1862 [1] 97: - - - 0 0.00 - - INFO 2025-06-26 06:10:58,372 calibrate.py _nudge_pos():1868 [1] Points in final series = 790 WARNING 2025-06-26 06:10:58,376 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:10:58,399 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:58,426 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 17 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:10:58,433 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 17 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:10:58,434 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.345.07/ctd1.nc INFO 2025-06-26 06:10:58,435 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:10:58,435 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:10:58,435 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:10:58,455 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 11 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:10:58,462 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 11 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:10:58,463 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.345.07/ctd2.nc INFO 2025-06-26 06:10:58,464 calibrate.py _range_qc_combined_nc():898 [1] Setting 6 ctd2_salinity values to NaN INFO 2025-06-26 06:10:58,465 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:10:58,465 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 06:10:58,471 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.07 ERROR 2025-06-26 06:10:58,471 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.07 ERROR 2025-06-26 06:10:58,471 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.07 INFO 2025-06-26 06:10:58,475 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07_cal.nc INFO 2025-06-26 06:10:58,512 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:10:58,516 process.py align():251 [1] Alignment steps for 2004.345.07 INFO 2025-06-26 06:10:58,536 align.py process_cal():139 [1] Processing dorado_2004.345.07_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.345.07 INFO 2025-06-26 06:10:58,541 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:58,542 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:58,551 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:58,553 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:58,561 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:58,562 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:58,567 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:10:58,567 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:10:58,570 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:58,572 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:58,579 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:58,581 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,589 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:58,591 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,599 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:58,601 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,609 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,611 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,619 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,621 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,629 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,631 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,639 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,641 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,649 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,651 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,659 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,661 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,670 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,671 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,680 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,681 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,690 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,691 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,700 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,701 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:58,710 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,712 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:10:58,721 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,723 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:10:58,732 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,734 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:10:58,742 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,744 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:10:58,753 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,754 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:10:58,763 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,765 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:10:58,774 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:58,775 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:10:58,786 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:10:58,797 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:10:58,808 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:10:58,885 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:58,895 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07_align.nc INFO 2025-06-26 06:10:58,930 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:10:58,932 process.py resample():273 [1] Resampling steps for 2004.345.07 INFO 2025-06-26 06:10:58,933 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:10:58,950 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07_align.nc mission netCDF file INFO 2025-06-26 06:10:58,954 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07_align.nc mission netCDF file INFO 2025-06-26 06:10:58,955 resample.py get_mission_start_end():1145 [1] navigation: 2004-12-10T23:05:11.513638016 to 2004-12-10T23:07:49.312828032 (0 days 00:00:00.149989888 before mission_end) INFO 2025-06-26 06:10:58,957 resample.py get_mission_start_end():1145 [1] hs2 : 2004-12-10T23:04:53.724856832 to 2004-12-10T23:07:49.232833664 (0 days 00:00:00.229984256 before mission_end) INFO 2025-06-26 06:10:58,958 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-12-10T23:05:08.153868160 to 2004-12-10T23:07:49.392822784 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 06:10:58,959 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-12-10T23:05:01.724308736 to 2004-12-10T23:07:49.462817920 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:10:58,960 resample.py get_mission_start_end():1145 [1] isus : 2004-12-10T23:06:05.809918592 to 2004-12-10T23:07:48.602876928 (0 days 00:00:00.859940992 before mission_end) INFO 2025-06-26 06:10:58,962 resample.py get_mission_start_end():1145 [1] tailcone : 2004-12-10T23:04:50.165100544 to 2004-12-10T23:07:49.322827520 (0 days 00:00:00.139990400 before mission_end) INFO 2025-06-26 06:10:58,962 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07_align.nc mission netCDF file INFO 2025-06-26 06:10:58,963 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:58,990 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:58,998 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,006 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,013 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,022 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,030 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,037 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,045 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,051 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,058 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,064 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,071 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,077 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,084 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,090 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,097 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,105 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,113 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,121 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,129 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,137 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,145 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,153 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,161 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,169 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,178 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:59,266 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07_1S.nc INFO 2025-06-26 06:10:59,622 create_products.py gulper_odv():401 [1] No gulper times found for 2004.345.07 INFO 2025-06-26 06:10:59,623 process.py archive():337 [1] Archiving steps for 2004.345.07 INFO 2025-06-26 06:10:59,623 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07, BASE_PATH = /data/auv_data INFO 2025-06-26 06:10:59,624 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:10:59,625 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.07_1S.nc INFO 2025-06-26 06:10:59,632 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:59,633 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.07_cal.nc INFO 2025-06-26 06:10:59,640 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:59,641 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.07_align.nc INFO 2025-06-26 06:10:59,648 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:59,655 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.07 done. INFO 2025-06-26 06:10:59,660 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.07 done. INFO 2025-06-26 06:10:59,665 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.07 done. INFO 2025-06-26 06:10:59,670 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.07 done. INFO 2025-06-26 06:10:59,676 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.07 done. INFO 2025-06-26 06:10:59,681 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.07 done. INFO 2025-06-26 06:10:59,686 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.07 done. INFO 2025-06-26 06:10:59,690 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.07 done. INFO 2025-06-26 06:10:59,690 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:10:59,690 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.07/dorado_2004.345.07_processing.log /Volumes/AUVCTD/surveys/2004/netcdf