INFO 2025-06-26 06:10:53,523 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:10:53,523 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 8/22/05 - ctdToUse = ctd1 INFO 2025-06-26 06:10:53,523 process.py process_mission():449 [1] Processing OCCO mission 2004.345.06 by user docker_user on host 671049448ece INFO 2025-06-26 06:10:53,524 process.py download_process():165 [1] Download and processing steps for 2004.345.06 INFO 2025-06-26 06:10:53,524 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004345/2004.345.06 INFO 2025-06-26 06:10:53,524 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004345/2004.345.06 to /data/auv_data/dorado/missionlogs/2004.345.06 INFO 2025-06-26 06:10:53,931 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.345.06 INFO 2025-06-26 06:10:53,932 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.06/ctdDriver.log (64107 bytes) INFO 2025-06-26 06:10:53,944 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.06/ctdDriver2.log (66565 bytes) INFO 2025-06-26 06:10:53,954 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.06/gps.log (9788 bytes) INFO 2025-06-26 06:10:53,962 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.06/hydroscatlog.log (47594 bytes) INFO 2025-06-26 06:10:53,975 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.06/navigation.log (140719 bytes) INFO 2025-06-26 06:10:53,996 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.06/isuslog.log (2805 bytes) INFO 2025-06-26 06:10:54,000 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.06/parosci.log (48086 bytes) INFO 2025-06-26 06:10:54,009 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.06/tailCone.log (47947 bytes) INFO 2025-06-26 06:10:54,022 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.09 seconds WARNING 2025-06-26 06:10:54,022 process.py download_process():196 [1] No lopc.bin file for 2004.345.06 INFO 2025-06-26 06:10:54,022 process.py calibrate():227 [1] Calibration steps for 2004.345.06 INFO 2025-06-26 06:10:54,071 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:10:54,072 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:10:54,732 calibrate.py _nudge_pos():1806 [1] 88: 0.080 -0.0000237 0.0000081 380 1.26 -2.790 1.181 2004-12-10T23:02:59.332693120 INFO 2025-06-26 06:10:55,058 calibrate.py _nudge_pos():1862 [1] 103: - - - 5 0.01 - - INFO 2025-06-26 06:10:55,058 calibrate.py _nudge_pos():1868 [1] Points in final series = 894 WARNING 2025-06-26 06:10:55,062 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:10:55,085 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:55,112 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:55,120 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:55,121 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.345.06/ctd1.nc INFO 2025-06-26 06:10:55,122 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:10:55,123 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:10:55,123 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:10:55,142 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 11 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:55,150 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 11 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:55,151 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.345.06/ctd2.nc INFO 2025-06-26 06:10:55,152 calibrate.py _range_qc_combined_nc():898 [1] Setting 8 ctd2_salinity values to NaN INFO 2025-06-26 06:10:55,152 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:10:55,152 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 06:10:55,158 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.06 ERROR 2025-06-26 06:10:55,158 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.06 ERROR 2025-06-26 06:10:55,158 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.06 INFO 2025-06-26 06:10:55,162 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06_cal.nc INFO 2025-06-26 06:10:55,197 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:10:55,200 process.py align():251 [1] Alignment steps for 2004.345.06 INFO 2025-06-26 06:10:55,219 align.py process_cal():139 [1] Processing dorado_2004.345.06_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.345.06 INFO 2025-06-26 06:10:55,223 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:55,224 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:55,233 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:55,235 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:55,242 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:55,244 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:55,248 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:10:55,248 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:10:55,251 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:55,253 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:55,261 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:55,262 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:10:55,270 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:55,272 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:10:55,280 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:55,281 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 06:10:55,289 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,291 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,299 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,300 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,308 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,310 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,320 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,321 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,330 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,331 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,339 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,341 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,349 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,351 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,359 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,361 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,369 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,370 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,379 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,380 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,389 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,390 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,399 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,401 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,410 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,411 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,420 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,422 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,431 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,433 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,442 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,444 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,453 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:55,455 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:55,466 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:10:55,478 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:10:55,489 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:10:55,501 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:55,511 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06_align.nc INFO 2025-06-26 06:10:55,550 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:10:55,552 process.py resample():273 [1] Resampling steps for 2004.345.06 INFO 2025-06-26 06:10:55,552 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:10:55,572 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06_align.nc mission netCDF file INFO 2025-06-26 06:10:55,576 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06_align.nc mission netCDF file INFO 2025-06-26 06:10:55,577 resample.py get_mission_start_end():1145 [1] navigation: 2004-12-10T23:00:36.742461184 to 2004-12-10T23:03:35.340226432 (0 days 00:00:00.019998720 before mission_end) INFO 2025-06-26 06:10:55,578 resample.py get_mission_start_end():1145 [1] hs2 : 2004-12-10T23:00:20.603566848 to 2004-12-10T23:03:35.360225152 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:10:55,580 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-12-10T23:00:35.282561280 to 2004-12-10T23:03:35.270231296 (0 days 00:00:00.089993856 before mission_end) INFO 2025-06-26 06:10:55,581 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-12-10T23:00:28.343036672 to 2004-12-10T23:03:35.330227200 (0 days 00:00:00.029997952 before mission_end) INFO 2025-06-26 06:10:55,583 resample.py get_mission_start_end():1145 [1] isus : 2004-12-10T23:01:31.988676608 to 2004-12-10T23:03:34.490284672 (0 days 00:00:00.869940480 before mission_end) INFO 2025-06-26 06:10:55,584 resample.py get_mission_start_end():1145 [1] tailcone : 2004-12-10T23:00:17.713764864 to 2004-12-10T23:03:35.290229760 (0 days 00:00:00.069995392 before mission_end) INFO 2025-06-26 06:10:55,584 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06_align.nc mission netCDF file INFO 2025-06-26 06:10:55,585 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,614 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,623 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,631 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,639 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,647 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,655 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,663 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,671 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,678 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,685 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,692 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,698 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,705 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,712 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,719 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,725 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,734 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,742 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,750 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,758 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,766 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,775 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,783 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,791 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,799 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,808 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:55,899 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06_1S.nc INFO 2025-06-26 06:10:56,836 create_products.py gulper_odv():401 [1] No gulper times found for 2004.345.06 INFO 2025-06-26 06:10:56,836 process.py archive():337 [1] Archiving steps for 2004.345.06 INFO 2025-06-26 06:10:56,836 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06, BASE_PATH = /data/auv_data INFO 2025-06-26 06:10:56,837 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:10:56,838 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.06_1S.nc INFO 2025-06-26 06:10:56,845 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:56,846 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.06_cal.nc INFO 2025-06-26 06:10:56,855 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:56,856 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.06_align.nc INFO 2025-06-26 06:10:56,866 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:56,873 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.06 done. INFO 2025-06-26 06:10:56,877 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.06 done. INFO 2025-06-26 06:10:56,882 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.06 done. INFO 2025-06-26 06:10:56,888 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.06 done. INFO 2025-06-26 06:10:56,895 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.06 done. INFO 2025-06-26 06:10:56,901 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.06 done. INFO 2025-06-26 06:10:56,906 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.06 done. INFO 2025-06-26 06:10:56,912 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.06 done. INFO 2025-06-26 06:10:56,912 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:10:56,912 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.06/dorado_2004.345.06_processing.log /Volumes/AUVCTD/surveys/2004/netcdf