INFO 2025-06-26 06:10:42,560 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:10:42,560 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 8/22/05 - ctdToUse = ctd1 INFO 2025-06-26 06:10:42,560 process.py process_mission():449 [1] Processing OCCO mission 2004.345.04 by user docker_user on host 671049448ece INFO 2025-06-26 06:10:42,560 process.py download_process():165 [1] Download and processing steps for 2004.345.04 INFO 2025-06-26 06:10:42,560 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004345/2004.345.04 INFO 2025-06-26 06:10:42,560 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004345/2004.345.04 to /data/auv_data/dorado/missionlogs/2004.345.04 INFO 2025-06-26 06:10:42,952 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.345.04 INFO 2025-06-26 06:10:42,953 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.04/ctdDriver.log (76163 bytes) INFO 2025-06-26 06:10:42,967 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.04/ctdDriver2.log (78533 bytes) INFO 2025-06-26 06:10:42,980 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.04/gps.log (11876 bytes) INFO 2025-06-26 06:10:42,988 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.04/hydroscatlog.log (55934 bytes) INFO 2025-06-26 06:10:43,002 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.04/navigation.log (166615 bytes) INFO 2025-06-26 06:10:43,024 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.04/isuslog.log (3477 bytes) INFO 2025-06-26 06:10:43,029 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.04/parosci.log (56294 bytes) INFO 2025-06-26 06:10:43,038 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.04/tailCone.log (56395 bytes) INFO 2025-06-26 06:10:43,052 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.10 seconds WARNING 2025-06-26 06:10:43,052 process.py download_process():196 [1] No lopc.bin file for 2004.345.04 INFO 2025-06-26 06:10:43,052 process.py calibrate():227 [1] Calibration steps for 2004.345.04 INFO 2025-06-26 06:10:43,101 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:10:43,103 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:10:43,672 calibrate.py _nudge_pos():1806 [1] 78: 0.010 -0.0000428 -0.0000033 415 1.38 -4.600 -0.441 2004-12-10T21:49:59.402738816 INFO 2025-06-26 06:10:44,370 calibrate.py _nudge_pos():1862 [1] 131: - - - 0 0.00 - - INFO 2025-06-26 06:10:44,370 calibrate.py _nudge_pos():1868 [1] Points in final series = 1038 WARNING 2025-06-26 06:10:44,375 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:10:44,400 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:44,429 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:44,438 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:44,439 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.345.04/ctd1.nc INFO 2025-06-26 06:10:44,440 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:10:44,441 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:10:44,441 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:10:44,463 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 11 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:44,472 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 11 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:44,473 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.345.04/ctd2.nc INFO 2025-06-26 06:10:44,474 calibrate.py _range_qc_combined_nc():898 [1] Setting 14 ctd2_salinity values to NaN INFO 2025-06-26 06:10:44,475 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:10:44,475 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 06:10:44,481 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.04 ERROR 2025-06-26 06:10:44,481 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.04 ERROR 2025-06-26 06:10:44,482 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.04 INFO 2025-06-26 06:10:44,486 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04_cal.nc INFO 2025-06-26 06:10:44,522 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:10:44,526 process.py align():251 [1] Alignment steps for 2004.345.04 INFO 2025-06-26 06:10:44,544 align.py process_cal():139 [1] Processing dorado_2004.345.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.345.04 INFO 2025-06-26 06:10:44,549 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:44,550 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:44,560 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:44,562 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:44,570 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:44,571 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:44,576 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:10:44,576 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:10:44,580 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:44,581 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:44,589 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:44,591 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,599 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:44,601 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,609 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:44,611 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,619 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,621 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,629 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,631 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,640 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,641 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,650 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,652 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,660 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,662 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,670 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,672 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,680 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,682 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,691 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,692 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,701 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,703 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,711 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,713 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,722 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,724 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,733 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,735 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,743 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,745 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,754 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,756 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,765 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,767 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,776 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,778 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,787 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:44,789 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:44,800 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:10:44,812 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:10:44,823 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:10:44,835 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:44,845 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04_align.nc INFO 2025-06-26 06:10:44,881 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:10:44,883 process.py resample():273 [1] Resampling steps for 2004.345.04 INFO 2025-06-26 06:10:44,883 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:10:44,901 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04_align.nc mission netCDF file INFO 2025-06-26 06:10:44,905 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04_align.nc mission netCDF file INFO 2025-06-26 06:10:44,906 resample.py get_mission_start_end():1145 [1] navigation: 2004-12-10T21:47:41.622177664 to 2004-12-10T21:51:13.407669248 (0 days 00:00:00.039997184 before mission_end) INFO 2025-06-26 06:10:44,907 resample.py get_mission_start_end():1145 [1] hs2 : 2004-12-10T21:47:24.393357696 to 2004-12-10T21:51:13.397669760 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 06:10:44,909 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-12-10T21:47:39.052353664 to 2004-12-10T21:51:13.287677568 (0 days 00:00:00.159988864 before mission_end) INFO 2025-06-26 06:10:44,910 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-12-10T21:47:32.322814464 to 2004-12-10T21:51:13.317675392 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 06:10:44,912 resample.py get_mission_start_end():1145 [1] isus : 2004-12-10T21:48:35.788466944 to 2004-12-10T21:51:12.587725440 (0 days 00:00:00.859940992 before mission_end) INFO 2025-06-26 06:10:44,913 resample.py get_mission_start_end():1145 [1] tailcone : 2004-12-10T21:47:20.663613312 to 2004-12-10T21:51:13.447666432 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:10:44,914 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04_align.nc mission netCDF file INFO 2025-06-26 06:10:44,914 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:44,942 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:44,951 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:44,959 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:44,966 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:44,975 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:44,983 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:44,991 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:44,998 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,005 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,012 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,019 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,026 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,033 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,040 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,046 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,053 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,061 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,069 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,077 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,085 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,093 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,101 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,109 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,117 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,125 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,134 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:45,222 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04_1S.nc INFO 2025-06-26 06:10:45,726 create_products.py gulper_odv():401 [1] No gulper times found for 2004.345.04 INFO 2025-06-26 06:10:45,727 process.py archive():337 [1] Archiving steps for 2004.345.04 INFO 2025-06-26 06:10:45,727 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04, BASE_PATH = /data/auv_data INFO 2025-06-26 06:10:45,727 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:10:45,728 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.04_1S.nc INFO 2025-06-26 06:10:45,737 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:45,738 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.04_cal.nc INFO 2025-06-26 06:10:45,747 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:45,748 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.04_align.nc INFO 2025-06-26 06:10:45,758 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:45,765 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.04 done. INFO 2025-06-26 06:10:45,769 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.04 done. INFO 2025-06-26 06:10:45,774 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.04 done. INFO 2025-06-26 06:10:45,778 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.04 done. INFO 2025-06-26 06:10:45,783 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.04 done. INFO 2025-06-26 06:10:45,788 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.04 done. INFO 2025-06-26 06:10:45,793 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.04 done. INFO 2025-06-26 06:10:45,798 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.04 done. INFO 2025-06-26 06:10:45,798 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:10:45,798 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.04/dorado_2004.345.04_processing.log /Volumes/AUVCTD/surveys/2004/netcdf