INFO 2025-06-26 06:10:23,770 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:10:23,770 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 8/22/05 - ctdToUse = ctd1 INFO 2025-06-26 06:10:23,770 process.py process_mission():449 [1] Processing OCCO mission 2004.345.03 by user docker_user on host 671049448ece INFO 2025-06-26 06:10:23,770 process.py download_process():165 [1] Download and processing steps for 2004.345.03 INFO 2025-06-26 06:10:23,770 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004345/2004.345.03 INFO 2025-06-26 06:10:23,771 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004345/2004.345.03 to /data/auv_data/dorado/missionlogs/2004.345.03 INFO 2025-06-26 06:10:25,736 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.345.03 INFO 2025-06-26 06:10:25,737 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.03/ctdDriver.log (5230939 bytes) INFO 2025-06-26 06:10:26,141 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.03/ctdDriver2.log (5173645 bytes) INFO 2025-06-26 06:10:26,520 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.03/gps.log (51980 bytes) INFO 2025-06-26 06:10:26,534 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.03/hydroscatlog.log (3571214 bytes) INFO 2025-06-26 06:10:26,944 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.03/navigation.log (11595799 bytes) INFO 2025-06-26 06:10:27,800 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.03/isuslog.log (307061 bytes) INFO 2025-06-26 06:10:27,835 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.03/parosci.log (3573014 bytes) INFO 2025-06-26 06:10:28,145 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.345.03/tailCone.log (3572155 bytes) INFO 2025-06-26 06:10:28,579 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.84 seconds WARNING 2025-06-26 06:10:28,579 process.py download_process():196 [1] No lopc.bin file for 2004.345.03 INFO 2025-06-26 06:10:28,580 process.py calibrate():227 [1] Calibration steps for 2004.345.03 INFO 2025-06-26 06:10:28,709 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:10:28,711 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:10:29,410 calibrate.py _nudge_pos():1806 [1] 91: 0.120 -0.0030828 0.0003168 8261 27.55 -16.602 2.131 2004-12-10T18:06:11.282628096 INFO 2025-06-26 06:10:29,857 calibrate.py _nudge_pos():1806 [1] 139: 0.110 0.0002810 0.0000575 5825 19.41 2.147 0.549 2004-12-10T18:26:23.289599872 INFO 2025-06-26 06:10:30,401 calibrate.py _nudge_pos():1806 [1] 192: 0.120 -0.0000380 -0.0000132 125 0.41 -13.653 -5.916 2004-12-10T18:27:40.284325376 INFO 2025-06-26 06:10:30,460 calibrate.py _nudge_pos():1806 [1] 198: 0.110 -0.0007013 0.0004808 4658 15.53 -6.701 5.737 2004-12-10T18:43:17.290136064 INFO 2025-06-26 06:10:31,011 calibrate.py _nudge_pos():1806 [1] 252: 0.120 -0.0031130 0.0002423 8165 27.21 -16.970 1.650 2004-12-10T19:11:23.284637696 INFO 2025-06-26 06:10:31,491 calibrate.py _nudge_pos():1806 [1] 303: 0.120 0.0000394 -0.0000436 5630 18.76 0.312 -0.430 2004-12-10T19:30:59.284076160 INFO 2025-06-26 06:10:31,960 calibrate.py _nudge_pos():1806 [1] 353: 0.110 -0.0007303 0.0004919 4615 15.38 -7.046 5.927 2004-12-10T19:47:11.287489408 INFO 2025-06-26 06:10:32,417 calibrate.py _nudge_pos():1806 [1] 401: 0.120 -0.0032300 0.0003672 8105 27.01 -17.738 2.519 2004-12-10T20:14:59.283223808 INFO 2025-06-26 06:10:32,832 calibrate.py _nudge_pos():1806 [1] 445: 0.130 0.0003061 0.0000947 5875 19.58 2.320 0.896 2004-12-10T20:35:17.289784704 INFO 2025-06-26 06:10:33,297 calibrate.py _nudge_pos():1806 [1] 493: 0.140 -0.0006828 0.0004209 4750 15.83 -6.401 4.927 2004-12-10T20:51:54.281486080 INFO 2025-06-26 06:10:33,781 calibrate.py _nudge_pos():1806 [1] 544: 0.120 -0.0035104 0.0005360 7935 26.45 -19.691 3.755 2004-12-10T21:19:11.289343360 INFO 2025-06-26 06:10:34,300 calibrate.py _nudge_pos():1806 [1] 596: 0.130 0.0003776 0.0000224 6045 20.15 2.781 0.206 2004-12-10T21:40:11.283027840 INFO 2025-06-26 06:10:34,387 calibrate.py _nudge_pos():1806 [1] 605: 0.140 0.0003378 0.0000676 75 0.25 203.190 50.783 2004-12-10T21:40:34.281452416 INFO 2025-06-26 06:10:34,837 calibrate.py _nudge_pos():1806 [1] 652: 0.130 -0.0001069 0.0000302 880 2.93 -5.413 1.909 2004-12-10T21:44:17.286175488 INFO 2025-06-26 06:10:35,394 calibrate.py _nudge_pos():1862 [1] 689: - - - 4 0.01 - - INFO 2025-06-26 06:10:35,394 calibrate.py _nudge_pos():1868 [1] Points in final series = 74322 WARNING 2025-06-26 06:10:35,474 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:10:36,011 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:36,567 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:37,007 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:37,009 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.345.03/ctd1.nc INFO 2025-06-26 06:10:37,010 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:10:37,011 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:10:37,011 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:10:37,524 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 20 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:37,967 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 20 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:37,969 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.345.03/ctd2.nc INFO 2025-06-26 06:10:37,970 calibrate.py _range_qc_combined_nc():898 [1] Setting 418 ctd2_salinity values to NaN INFO 2025-06-26 06:10:37,970 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:10:37,971 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 06:10:37,984 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.03 ERROR 2025-06-26 06:10:37,984 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.03 ERROR 2025-06-26 06:10:37,984 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.345.03 INFO 2025-06-26 06:10:38,044 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03_cal.nc INFO 2025-06-26 06:10:38,120 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:10:38,124 process.py align():251 [1] Alignment steps for 2004.345.03 INFO 2025-06-26 06:10:38,149 align.py process_cal():139 [1] Processing dorado_2004.345.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.345.03 INFO 2025-06-26 06:10:38,172 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:38,175 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:38,245 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:38,250 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:38,305 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:38,309 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:38,342 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:10:38,342 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:10:38,364 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:38,367 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:38,421 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:38,424 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:38,474 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:38,478 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:38,527 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:38,531 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:38,580 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:38,584 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:38,633 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:38,636 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:38,684 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:38,688 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:38,737 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:38,741 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:38,789 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:38,792 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:38,841 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:38,844 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:38,892 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:38,896 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:38,944 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:38,948 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:38,996 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:39,000 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:39,050 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:39,053 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:39,102 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:39,106 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.95 INFO 2025-06-26 06:10:39,155 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:39,159 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.95 INFO 2025-06-26 06:10:39,209 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:39,213 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.95 INFO 2025-06-26 06:10:39,263 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:39,267 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.95 INFO 2025-06-26 06:10:39,316 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:39,320 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.95 INFO 2025-06-26 06:10:39,369 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:39,373 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.95 INFO 2025-06-26 06:10:39,421 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.345.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:39,425 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.95 INFO 2025-06-26 06:10:39,479 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:10:39,517 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:10:39,553 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:10:39,590 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:39,628 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03_align.nc INFO 2025-06-26 06:10:39,696 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:10:39,699 process.py resample():273 [1] Resampling steps for 2004.345.03 INFO 2025-06-26 06:10:39,699 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:10:39,723 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03_align.nc mission netCDF file INFO 2025-06-26 06:10:39,728 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03_align.nc mission netCDF file INFO 2025-06-26 06:10:39,729 resample.py get_mission_start_end():1145 [1] navigation: 2004-12-10T17:37:29.290592640 to 2004-12-10T21:45:15.082216320 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 06:10:39,731 resample.py get_mission_start_end():1145 [1] hs2 : 2004-12-10T17:37:13.051705088 to 2004-12-10T21:45:15.022220416 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 06:10:39,733 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-12-10T17:37:36.360108416 to 2004-12-10T21:45:15.022220416 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 06:10:39,735 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-12-10T17:37:29.140603008 to 2004-12-10T21:45:15.062217472 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 06:10:39,736 resample.py get_mission_start_end():1145 [1] isus : 2004-12-10T17:38:24.406816896 to 2004-12-10T21:45:14.262272384 (0 days 00:00:00.899938304 before mission_end) INFO 2025-06-26 06:10:39,738 resample.py get_mission_start_end():1145 [1] tailcone : 2004-12-10T17:37:09.391955840 to 2004-12-10T21:45:15.162210688 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:10:39,739 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03_align.nc mission netCDF file INFO 2025-06-26 06:10:39,740 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:39,913 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:39,944 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:39,974 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,005 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,034 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,062 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,089 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,116 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,141 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,167 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,191 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,216 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,243 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,269 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,294 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,319 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,346 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,373 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,401 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,427 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,455 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,482 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,497 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,509 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,521 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,550 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:40,724 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03_1S.nc INFO 2025-06-26 06:10:42,219 create_products.py gulper_odv():401 [1] No gulper times found for 2004.345.03 INFO 2025-06-26 06:10:42,219 process.py archive():337 [1] Archiving steps for 2004.345.03 INFO 2025-06-26 06:10:42,219 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03, BASE_PATH = /data/auv_data INFO 2025-06-26 06:10:42,219 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:10:42,221 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.03_1S.nc INFO 2025-06-26 06:10:42,239 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:42,240 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.03_cal.nc INFO 2025-06-26 06:10:42,310 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:42,311 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.345.03_align.nc INFO 2025-06-26 06:10:42,384 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:42,410 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.03 done. INFO 2025-06-26 06:10:42,435 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.03 done. INFO 2025-06-26 06:10:42,441 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.03 done. INFO 2025-06-26 06:10:42,456 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.03 done. INFO 2025-06-26 06:10:42,494 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.03 done. INFO 2025-06-26 06:10:42,500 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.03 done. INFO 2025-06-26 06:10:42,515 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.03 done. INFO 2025-06-26 06:10:42,536 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004345/2004.345.03 done. INFO 2025-06-26 06:10:42,536 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:10:42,536 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.345.03/dorado_2004.345.03_processing.log /Volumes/AUVCTD/surveys/2004/netcdf