INFO 2025-06-26 06:09:58,344 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:09:58,345 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 8/22/05 - ctdToUse = ctd1 INFO 2025-06-26 06:09:58,345 process.py process_mission():449 [1] Processing OCCO mission 2004.344.07 by user docker_user on host 671049448ece INFO 2025-06-26 06:09:58,345 process.py download_process():165 [1] Download and processing steps for 2004.344.07 INFO 2025-06-26 06:09:58,345 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004344/2004.344.07 INFO 2025-06-26 06:09:58,345 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004344/2004.344.07 to /data/auv_data/dorado/missionlogs/2004.344.07 INFO 2025-06-26 06:09:59,676 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.344.07 INFO 2025-06-26 06:09:59,677 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.07/ctdDriver.log (1353659 bytes) INFO 2025-06-26 06:09:59,795 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.07/ctdDriver2.log (1356117 bytes) INFO 2025-06-26 06:09:59,927 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.07/gps.log (16484 bytes) INFO 2025-06-26 06:09:59,939 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.07/hydroscatlog.log (926414 bytes) INFO 2025-06-26 06:10:00,081 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.07/navigation.log (2998327 bytes) INFO 2025-06-26 06:10:00,352 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.07/isuslog.log (78709 bytes) INFO 2025-06-26 06:10:00,365 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.07/parosci.log (927254 bytes) INFO 2025-06-26 06:10:00,448 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.07/tailCone.log (927211 bytes) INFO 2025-06-26 06:10:00,595 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.92 seconds WARNING 2025-06-26 06:10:00,596 process.py download_process():196 [1] No lopc.bin file for 2004.344.07 INFO 2025-06-26 06:10:00,596 process.py calibrate():227 [1] Calibration steps for 2004.344.07 INFO 2025-06-26 06:10:00,666 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:10:00,667 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:10:01,432 calibrate.py _nudge_pos():1806 [1] 100: 0.120 0.0001146 -0.0000031 70 0.23 73.914 -2.489 2004-12-09T22:58:55.388987520 INFO 2025-06-26 06:10:01,482 calibrate.py _nudge_pos():1806 [1] 105: 0.120 0.0002659 0.0000214 4715 15.71 2.511 0.252 2004-12-09T23:14:42.394113280 INFO 2025-06-26 06:10:01,887 calibrate.py _nudge_pos():1806 [1] 147: 0.120 -0.0008787 0.0002229 5315 17.71 -7.361 2.331 2004-12-09T23:33:06.388484480 INFO 2025-06-26 06:10:02,360 calibrate.py _nudge_pos():1806 [1] 197: 0.120 -0.0029713 0.0003014 8155 27.18 -16.217 2.055 2004-12-10T00:01:06.393396352 INFO 2025-06-26 06:10:02,553 calibrate.py _nudge_pos():1862 [1] 196: - - - 1 0.00 - - INFO 2025-06-26 06:10:02,553 calibrate.py _nudge_pos():1868 [1] Points in final series = 19211 WARNING 2025-06-26 06:10:02,572 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:10:02,730 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:02,897 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:03,012 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:03,013 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.344.07/ctd1.nc INFO 2025-06-26 06:10:03,014 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:10:03,015 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:10:03,015 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:10:03,158 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 11 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:03,276 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 11 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:10:03,278 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.344.07/ctd2.nc INFO 2025-06-26 06:10:03,279 calibrate.py _range_qc_combined_nc():898 [1] Setting 153 ctd2_salinity values to NaN INFO 2025-06-26 06:10:03,279 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:10:03,279 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 06:10:03,287 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.344.07 ERROR 2025-06-26 06:10:03,288 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.344.07 ERROR 2025-06-26 06:10:03,288 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.344.07 INFO 2025-06-26 06:10:03,307 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07_cal.nc INFO 2025-06-26 06:10:03,358 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:10:03,361 process.py align():251 [1] Alignment steps for 2004.344.07 INFO 2025-06-26 06:10:03,384 align.py process_cal():139 [1] Processing dorado_2004.344.07_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.344.07 INFO 2025-06-26 06:10:03,394 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:03,396 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:03,417 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:03,420 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:03,440 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:03,443 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:03,455 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:10:03,455 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:10:03,463 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:10:03,465 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:03,486 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:03,488 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,507 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:03,509 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,528 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:10:03,530 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,549 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,551 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,570 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,572 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,592 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,594 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,613 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,615 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,635 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,637 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,656 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,658 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,678 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,681 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,700 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,703 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,723 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,726 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,746 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,748 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,768 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,771 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,790 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,793 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,813 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,815 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,835 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,838 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,858 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,861 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,880 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,882 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,902 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:10:03,904 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:10:03,927 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:10:03,945 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:10:03,963 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:10:03,982 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:10:03,999 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07_align.nc INFO 2025-06-26 06:10:04,047 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:10:04,049 process.py resample():273 [1] Resampling steps for 2004.344.07 INFO 2025-06-26 06:10:04,049 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:10:04,072 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07_align.nc mission netCDF file INFO 2025-06-26 06:10:04,076 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07_align.nc mission netCDF file INFO 2025-06-26 06:10:04,078 resample.py get_mission_start_end():1145 [1] navigation: 2004-12-09T22:57:23.405288960 to 2004-12-10T00:01:25.592081024 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:10:04,079 resample.py get_mission_start_end():1145 [1] hs2 : 2004-12-09T22:57:07.316391040 to 2004-12-10T00:01:25.372096256 (0 days 00:00:00.219984768 before mission_end) INFO 2025-06-26 06:10:04,081 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-12-09T22:57:21.985386112 to 2004-12-10T00:01:25.382095616 (0 days 00:00:00.209985408 before mission_end) INFO 2025-06-26 06:10:04,082 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-12-09T22:57:15.165853440 to 2004-12-10T00:01:25.582081792 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 06:10:04,084 resample.py get_mission_start_end():1145 [1] isus : 2004-12-09T22:58:18.741498240 to 2004-12-10T00:01:25.112113920 (0 days 00:00:00.479967104 before mission_end) INFO 2025-06-26 06:10:04,085 resample.py get_mission_start_end():1145 [1] tailcone : 2004-12-09T22:57:03.646642432 to 2004-12-10T00:01:25.422092672 (0 days 00:00:00.169988352 before mission_end) INFO 2025-06-26 06:10:04,086 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07_align.nc mission netCDF file INFO 2025-06-26 06:10:04,086 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,156 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,171 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,185 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,199 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,213 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,227 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,240 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,253 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,264 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,276 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,288 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,299 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,310 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,322 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,333 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,344 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,357 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,371 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,385 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,398 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,411 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,424 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,434 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,444 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,454 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,469 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:10:04,586 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07_1S.nc INFO 2025-06-26 06:10:06,295 create_products.py gulper_odv():401 [1] No gulper times found for 2004.344.07 INFO 2025-06-26 06:10:06,295 process.py archive():337 [1] Archiving steps for 2004.344.07 INFO 2025-06-26 06:10:06,295 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07, BASE_PATH = /data/auv_data INFO 2025-06-26 06:10:06,296 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:10:06,297 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.344.07_1S.nc INFO 2025-06-26 06:10:06,309 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:06,311 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.344.07_cal.nc INFO 2025-06-26 06:10:06,334 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:06,335 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.344.07_align.nc INFO 2025-06-26 06:10:06,358 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:10:06,370 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.07 done. INFO 2025-06-26 06:10:06,381 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.07 done. INFO 2025-06-26 06:10:06,386 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.07 done. INFO 2025-06-26 06:10:06,399 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.07 done. INFO 2025-06-26 06:10:06,414 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.07 done. INFO 2025-06-26 06:10:06,419 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.07 done. INFO 2025-06-26 06:10:06,428 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.07 done. INFO 2025-06-26 06:10:06,439 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.07 done. INFO 2025-06-26 06:10:06,440 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:10:06,440 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.07/dorado_2004.344.07_processing.log /Volumes/AUVCTD/surveys/2004/netcdf