INFO 2025-06-26 06:09:36,196 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:09:36,197 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 8/22/05 - ctdToUse = ctd1 INFO 2025-06-26 06:09:36,197 process.py process_mission():449 [1] Processing OCCO mission 2004.344.06 by user docker_user on host 671049448ece INFO 2025-06-26 06:09:36,197 process.py download_process():165 [1] Download and processing steps for 2004.344.06 INFO 2025-06-26 06:09:36,197 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004344/2004.344.06 INFO 2025-06-26 06:09:36,197 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004344/2004.344.06 to /data/auv_data/dorado/missionlogs/2004.344.06 INFO 2025-06-26 06:09:38,415 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.344.06 INFO 2025-06-26 06:09:38,415 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.06/ctdDriver.log (4063003 bytes) INFO 2025-06-26 06:09:38,747 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.06/ctdDriver2.log (4064669 bytes) INFO 2025-06-26 06:09:39,068 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.06/gps.log (38876 bytes) INFO 2025-06-26 06:09:39,080 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.06/hydroscatlog.log (2772734 bytes) INFO 2025-06-26 06:09:39,403 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2004.344.06/hydroscatlog.log: [10864] INFO 2025-06-26 06:09:39,409 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.06/navigation.log (9001675 bytes) INFO 2025-06-26 06:09:40,100 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.06/isuslog.log (237397 bytes) INFO 2025-06-26 06:09:40,127 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.06/parosci.log (2772998 bytes) INFO 2025-06-26 06:09:40,362 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.06/tailCone.log (2774203 bytes) INFO 2025-06-26 06:09:40,719 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.30 seconds WARNING 2025-06-26 06:09:40,719 process.py download_process():196 [1] No lopc.bin file for 2004.344.06 INFO 2025-06-26 06:09:40,719 process.py calibrate():227 [1] Calibration steps for 2004.344.06 INFO 2025-06-26 06:09:40,833 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:09:40,835 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:09:41,680 calibrate.py _nudge_pos():1806 [1] 104: 0.120 0.0002078 0.0001740 5255 17.51 1.761 1.841 2004-12-09T20:02:30.384110208 INFO 2025-06-26 06:09:42,120 calibrate.py _nudge_pos():1806 [1] 151: 0.110 -0.0008890 0.0003172 5170 17.23 -7.657 3.411 2004-12-09T20:20:30.390124544 INFO 2025-06-26 06:09:42,558 calibrate.py _nudge_pos():1806 [1] 198: 0.130 -0.0030466 0.0004471 8140 27.13 -16.659 3.054 2004-12-09T20:48:24.385448192 INFO 2025-06-26 06:09:43,016 calibrate.py _nudge_pos():1806 [1] 246: 0.120 0.0002216 0.0000625 5105 17.01 1.932 0.680 2004-12-09T21:06:12.382285312 INFO 2025-06-26 06:09:43,474 calibrate.py _nudge_pos():1806 [1] 295: 0.110 -0.0009164 0.0002232 5250 17.50 -7.772 2.363 2004-12-09T21:24:30.387066880 INFO 2025-06-26 06:09:43,898 calibrate.py _nudge_pos():1806 [1] 340: 0.120 -0.0029777 0.0004204 8000 26.66 -16.567 2.921 2004-12-09T21:51:54.384445184 INFO 2025-06-26 06:09:44,313 calibrate.py _nudge_pos():1806 [1] 384: 0.120 0.0002013 0.0000241 5035 16.78 1.780 0.266 2004-12-09T22:09:24.382515456 INFO 2025-06-26 06:09:44,758 calibrate.py _nudge_pos():1806 [1] 431: 0.120 -0.0008987 0.0003057 5380 17.93 -7.438 3.160 2004-12-09T22:28:06.385652992 INFO 2025-06-26 06:09:45,193 calibrate.py _nudge_pos():1806 [1] 477: 0.120 -0.0031319 0.0002285 7875 26.25 -17.702 1.613 2004-12-09T22:55:06.384675456 INFO 2025-06-26 06:09:45,691 calibrate.py _nudge_pos():1862 [1] 507: - - - 3 0.01 - - INFO 2025-06-26 06:09:45,691 calibrate.py _nudge_pos():1868 [1] Points in final series = 57695 WARNING 2025-06-26 06:09:45,740 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:09:52,021 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:09:52,487 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:09:52,845 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:09:52,847 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.344.06/ctd1.nc INFO 2025-06-26 06:09:52,848 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:09:52,848 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:09:52,848 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:09:53,253 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 12 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:09:53,591 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 12 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:09:53,593 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.344.06/ctd2.nc INFO 2025-06-26 06:09:53,595 calibrate.py _range_qc_combined_nc():898 [1] Setting 400 ctd2_salinity values to NaN INFO 2025-06-26 06:09:53,595 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:09:53,595 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 06:09:53,607 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.344.06 ERROR 2025-06-26 06:09:53,607 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.344.06 ERROR 2025-06-26 06:09:53,607 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.344.06 INFO 2025-06-26 06:09:53,654 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06_cal.nc INFO 2025-06-26 06:09:53,719 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:09:53,723 process.py align():251 [1] Alignment steps for 2004.344.06 INFO 2025-06-26 06:09:53,747 align.py process_cal():139 [1] Processing dorado_2004.344.06_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.344.06 INFO 2025-06-26 06:09:53,767 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:09:53,770 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:09:53,817 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:09:53,821 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:09:53,865 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:09:53,868 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:09:53,895 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:09:53,895 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:09:53,916 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:09:53,919 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:09:53,963 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:09:53,967 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,007 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:09:54,011 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,052 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:09:54,055 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,097 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,100 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,142 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,145 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,186 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,190 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,231 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,235 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,276 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,280 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,320 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,324 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,365 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,369 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,416 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,421 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,473 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,477 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,518 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,521 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,563 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,566 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,608 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,611 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,653 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,656 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,698 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,702 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,744 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,748 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,790 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,794 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,836 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:54,839 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:54,885 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:09:54,916 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:09:54,947 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:09:54,980 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:09:55,016 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06_align.nc INFO 2025-06-26 06:09:55,077 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:09:55,079 process.py resample():273 [1] Resampling steps for 2004.344.06 INFO 2025-06-26 06:09:55,080 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:09:55,102 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06_align.nc mission netCDF file INFO 2025-06-26 06:09:55,107 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06_align.nc mission netCDF file INFO 2025-06-26 06:09:55,109 resample.py get_mission_start_end():1145 [1] navigation: 2004-12-09T19:43:37.991684480 to 2004-12-09T22:55:56.991208832 (0 days 00:00:00.019998464 before mission_end) INFO 2025-06-26 06:09:55,111 resample.py get_mission_start_end():1145 [1] hs2 : 2004-12-09T19:43:22.012779008 to 2004-12-09T22:55:56.921213440 (0 days 00:00:00.089993856 before mission_end) INFO 2025-06-26 06:09:55,112 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-12-09T19:43:36.781767168 to 2004-12-09T22:55:57.001208064 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 06:09:55,114 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-12-09T19:43:29.972233728 to 2004-12-09T22:55:56.971209984 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 06:09:55,116 resample.py get_mission_start_end():1145 [1] isus : 2004-12-09T19:44:33.347892224 to 2004-12-09T22:55:55.731295104 (0 days 00:00:01.279912192 before mission_end) INFO 2025-06-26 06:09:55,117 resample.py get_mission_start_end():1145 [1] tailcone : 2004-12-09T19:43:18.513018624 to 2004-12-09T22:55:57.011207296 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:09:55,118 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06_align.nc mission netCDF file INFO 2025-06-26 06:09:55,119 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,260 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,287 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,313 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,338 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,362 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,385 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,408 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,430 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,451 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,474 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,495 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,516 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,536 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,557 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,578 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,599 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,623 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,646 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,667 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,690 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,712 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,735 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,749 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,762 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,773 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,797 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:55,950 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06_1S.nc INFO 2025-06-26 06:09:58,043 create_products.py gulper_odv():401 [1] No gulper times found for 2004.344.06 INFO 2025-06-26 06:09:58,043 process.py archive():337 [1] Archiving steps for 2004.344.06 INFO 2025-06-26 06:09:58,043 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06, BASE_PATH = /data/auv_data INFO 2025-06-26 06:09:58,045 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:09:58,046 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.344.06_1S.nc INFO 2025-06-26 06:09:58,063 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:09:58,064 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.344.06_cal.nc INFO 2025-06-26 06:09:58,120 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:09:58,121 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.344.06_align.nc INFO 2025-06-26 06:09:58,180 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:09:58,212 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.06 done. INFO 2025-06-26 06:09:58,232 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.06 done. INFO 2025-06-26 06:09:58,240 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.06 done. INFO 2025-06-26 06:09:58,255 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.06 done. INFO 2025-06-26 06:09:58,286 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.06 done. INFO 2025-06-26 06:09:58,293 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.06 done. INFO 2025-06-26 06:09:58,307 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.06 done. INFO 2025-06-26 06:09:58,324 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.06 done. INFO 2025-06-26 06:09:58,325 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:09:58,325 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.06/dorado_2004.344.06_processing.log /Volumes/AUVCTD/surveys/2004/netcdf