INFO 2025-06-26 06:09:18,817 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:09:18,817 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 8/22/05 - ctdToUse = ctd1 INFO 2025-06-26 06:09:18,817 process.py process_mission():449 [1] Processing OCCO mission 2004.344.05 by user docker_user on host 671049448ece INFO 2025-06-26 06:09:18,817 process.py download_process():165 [1] Download and processing steps for 2004.344.05 INFO 2025-06-26 06:09:18,817 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004344/2004.344.05 INFO 2025-06-26 06:09:18,817 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004344/2004.344.05 to /data/auv_data/dorado/missionlogs/2004.344.05 INFO 2025-06-26 06:09:20,757 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.344.05 INFO 2025-06-26 06:09:20,757 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.05/ctdDriver.log (3989787 bytes) INFO 2025-06-26 06:09:21,066 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.05/ctdDriver2.log (3924133 bytes) INFO 2025-06-26 06:09:21,360 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.05/gps.log (49172 bytes) INFO 2025-06-26 06:09:21,374 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.05/hydroscatlog.log (2724854 bytes) INFO 2025-06-26 06:09:21,700 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.05/navigation.log (8844271 bytes) INFO 2025-06-26 06:09:22,369 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.05/isuslog.log (233429 bytes) INFO 2025-06-26 06:09:22,397 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.05/parosci.log (2726342 bytes) INFO 2025-06-26 06:09:22,632 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.344.05/tailCone.log (2726491 bytes) INFO 2025-06-26 06:09:22,975 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.22 seconds WARNING 2025-06-26 06:09:22,975 process.py download_process():196 [1] No lopc.bin file for 2004.344.05 INFO 2025-06-26 06:09:22,975 process.py calibrate():227 [1] Calibration steps for 2004.344.05 INFO 2025-06-26 06:09:23,088 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:09:23,090 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:09:24,040 calibrate.py _nudge_pos():1806 [1] 117: 0.150 0.0001621 -0.0001366 4175 13.91 1.728 -1.819 2004-12-09T16:48:42.340685568 INFO 2025-06-26 06:09:24,549 calibrate.py _nudge_pos():1806 [1] 171: 0.150 -0.0009642 0.0002606 4985 16.61 -8.612 2.906 2004-12-09T17:06:12.338755840 INFO 2025-06-26 06:09:24,991 calibrate.py _nudge_pos():1806 [1] 217: 0.150 -0.0028722 0.0004191 8145 27.15 -15.695 2.860 2004-12-09T17:34:06.344078592 INFO 2025-06-26 06:09:25,429 calibrate.py _nudge_pos():1806 [1] 263: 0.170 0.0002477 0.0000664 4993 16.65 2.208 0.739 2004-12-09T17:51:30.342559872 INFO 2025-06-26 06:09:25,902 calibrate.py _nudge_pos():1806 [1] 313: 0.160 -0.0009635 0.0002129 5065 16.88 -8.470 2.337 2004-12-09T18:09:12.339808000 INFO 2025-06-26 06:09:26,368 calibrate.py _nudge_pos():1806 [1] 361: 0.170 -0.0029053 0.0004196 8105 27.01 -15.955 2.878 2004-12-09T18:37:00.335542400 INFO 2025-06-26 06:09:26,820 calibrate.py _nudge_pos():1806 [1] 408: 0.170 0.0002259 0.0000716 4780 15.93 2.104 0.833 2004-12-09T18:53:42.336900736 INFO 2025-06-26 06:09:27,252 calibrate.py _nudge_pos():1806 [1] 453: 0.160 -0.0009810 0.0002938 5150 17.16 -8.482 3.172 2004-12-09T19:11:36.343326336 INFO 2025-06-26 06:09:27,680 calibrate.py _nudge_pos():1806 [1] 498: 0.160 -0.0030881 0.0005102 8090 26.96 -16.990 3.507 2004-12-09T19:39:18.339471872 INFO 2025-06-26 06:09:29,330 calibrate.py _nudge_pos():1862 [1] 649: - - - 2 0.00 - - INFO 2025-06-26 06:09:29,330 calibrate.py _nudge_pos():1868 [1] Points in final series = 56685 WARNING 2025-06-26 06:09:29,379 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:09:29,799 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:09:30,230 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:09:30,563 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:09:30,565 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.344.05/ctd1.nc INFO 2025-06-26 06:09:30,566 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:09:30,567 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:09:30,567 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:09:30,960 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:09:31,292 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:09:31,294 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.344.05/ctd2.nc INFO 2025-06-26 06:09:31,296 calibrate.py _range_qc_combined_nc():898 [1] Setting 313 ctd2_salinity values to NaN INFO 2025-06-26 06:09:31,296 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:09:31,296 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 06:09:31,308 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.344.05 ERROR 2025-06-26 06:09:31,309 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.344.05 ERROR 2025-06-26 06:09:31,309 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.344.05 INFO 2025-06-26 06:09:31,357 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05_cal.nc INFO 2025-06-26 06:09:31,424 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:09:31,428 process.py align():251 [1] Alignment steps for 2004.344.05 INFO 2025-06-26 06:09:31,453 align.py process_cal():139 [1] Processing dorado_2004.344.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.344.05 INFO 2025-06-26 06:09:31,473 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:09:31,476 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:09:31,522 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:09:31,525 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:09:31,569 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:09:31,572 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:09:31,598 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:09:31,598 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:09:31,615 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:09:31,619 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:09:31,662 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:09:31,666 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:31,705 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:09:31,709 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:31,748 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:09:31,752 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:31,791 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:31,795 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:31,835 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:31,839 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:31,878 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:31,882 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:31,922 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:31,925 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:31,965 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:31,968 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:32,009 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,012 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:32,052 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,056 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:32,095 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,098 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:32,137 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,141 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:32,180 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,183 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:09:32,223 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,226 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.93 INFO 2025-06-26 06:09:32,266 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,270 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.93 INFO 2025-06-26 06:09:32,311 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,315 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.93 INFO 2025-06-26 06:09:32,355 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,358 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.93 INFO 2025-06-26 06:09:32,399 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,403 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.93 INFO 2025-06-26 06:09:32,443 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,447 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.93 INFO 2025-06-26 06:09:32,488 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.344.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:09:32,491 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.93 INFO 2025-06-26 06:09:32,536 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:09:32,567 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:09:32,597 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:09:32,631 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:09:32,665 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05_align.nc INFO 2025-06-26 06:09:32,726 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:09:32,729 process.py resample():273 [1] Resampling steps for 2004.344.05 INFO 2025-06-26 06:09:32,729 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:09:32,752 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05_align.nc mission netCDF file INFO 2025-06-26 06:09:32,757 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05_align.nc mission netCDF file INFO 2025-06-26 06:09:32,758 resample.py get_mission_start_end():1145 [1] navigation: 2004-12-09T16:33:13.344326272 to 2004-12-09T19:42:10.737661568 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:09:32,760 resample.py get_mission_start_end():1145 [1] hs2 : 2004-12-09T16:32:56.035511936 to 2004-12-09T19:42:10.687665024 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 06:09:32,762 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-12-09T16:33:18.373981696 to 2004-12-09T19:42:10.597671296 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 06:09:32,763 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-12-09T16:33:11.674440576 to 2004-12-09T19:42:10.667666432 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 06:09:32,765 resample.py get_mission_start_end():1145 [1] isus : 2004-12-09T16:34:08.070577408 to 2004-12-09T19:42:09.647736320 (0 days 00:00:01.089925248 before mission_end) INFO 2025-06-26 06:09:32,766 resample.py get_mission_start_end():1145 [1] tailcone : 2004-12-09T16:32:51.725807232 to 2004-12-09T19:42:10.697664256 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 06:09:32,767 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05_align.nc mission netCDF file INFO 2025-06-26 06:09:32,768 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:32,908 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:32,933 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:32,957 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:32,982 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,006 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,030 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,052 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,073 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,093 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,113 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,133 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,153 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,172 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,192 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,212 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,231 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,254 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,276 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,298 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,320 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,342 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,364 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,377 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,389 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,400 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,423 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:09:33,580 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05_1S.nc INFO 2025-06-26 06:09:35,908 create_products.py gulper_odv():401 [1] No gulper times found for 2004.344.05 INFO 2025-06-26 06:09:35,908 process.py archive():337 [1] Archiving steps for 2004.344.05 INFO 2025-06-26 06:09:35,908 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05, BASE_PATH = /data/auv_data INFO 2025-06-26 06:09:35,909 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:09:35,910 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.344.05_1S.nc INFO 2025-06-26 06:09:35,925 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:09:35,926 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.344.05_cal.nc INFO 2025-06-26 06:09:35,982 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:09:35,983 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.344.05_align.nc INFO 2025-06-26 06:09:36,040 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:09:36,062 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.05 done. INFO 2025-06-26 06:09:36,080 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.05 done. INFO 2025-06-26 06:09:36,086 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.05 done. INFO 2025-06-26 06:09:36,099 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.05 done. INFO 2025-06-26 06:09:36,133 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.05 done. INFO 2025-06-26 06:09:36,142 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.05 done. INFO 2025-06-26 06:09:36,157 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.05 done. INFO 2025-06-26 06:09:36,175 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004344/2004.344.05 done. INFO 2025-06-26 06:09:36,175 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:09:36,175 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.344.05/dorado_2004.344.05_processing.log /Volumes/AUVCTD/surveys/2004/netcdf