INFO 2025-06-26 06:07:25,262 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:07:25,262 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Processed fine on prey, a volume survey Re-portaled 8/21/05 - ctdToUse = ctd1 INFO 2025-06-26 06:07:25,263 process.py process_mission():449 [1] Processing AUVCTD mission 2004.315.00 by user docker_user on host 671049448ece INFO 2025-06-26 06:07:25,263 process.py download_process():165 [1] Download and processing steps for 2004.315.00 INFO 2025-06-26 06:07:25,263 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004315/2004.315.00 INFO 2025-06-26 06:07:25,263 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004315/2004.315.00 to /data/auv_data/dorado/missionlogs/2004.315.00 INFO 2025-06-26 06:07:26,351 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.315.00 INFO 2025-06-26 06:07:26,351 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.315.00/ctdDriver.log (1008875 bytes) INFO 2025-06-26 06:07:26,444 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.315.00/ctdDriver2.log (1008957 bytes) INFO 2025-06-26 06:07:26,533 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.315.00/gps.log (43772 bytes) INFO 2025-06-26 06:07:26,547 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.315.00/hydroscatlog.log (691754 bytes) INFO 2025-06-26 06:07:26,638 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.315.00/navigation.log (2233459 bytes) INFO 2025-06-26 06:07:26,806 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.315.00/isuslog.log (58229 bytes) INFO 2025-06-26 06:07:26,816 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.315.00/parosci.log (692342 bytes) INFO 2025-06-26 06:07:26,877 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.315.00/tailCone.log (692395 bytes) INFO 2025-06-26 06:07:26,969 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.315.00/biolume.log (787580 bytes) INFO 2025-06-26 06:07:27,047 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 06:07:27,091 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.74 seconds WARNING 2025-06-26 06:07:27,091 process.py download_process():196 [1] No lopc.bin file for 2004.315.00 INFO 2025-06-26 06:07:27,091 process.py calibrate():227 [1] Calibration steps for 2004.315.00 INFO 2025-06-26 06:07:27,163 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:07:27,165 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:07:28,115 calibrate.py _nudge_pos():1806 [1] 119: 0.060 0.0001916 0.0004273 2885 9.61 2.956 8.236 2004-11-10T17:16:06.059686400 INFO 2025-06-26 06:07:28,153 calibrate.py _nudge_pos():1806 [1] 123: 0.060 0.0001883 0.0004442 80 0.26 106.071 312.584 2004-11-10T17:16:25.058384896 INFO 2025-06-26 06:07:28,898 calibrate.py _nudge_pos():1806 [1] 204: 0.070 0.0002202 0.0003952 3282 10.95 2.984 6.690 2004-11-10T17:28:42.057897088 INFO 2025-06-26 06:07:29,422 calibrate.py _nudge_pos():1806 [1] 260: 0.070 -0.0009291 -0.0005859 4735 15.78 -8.737 -6.880 2004-11-10T17:45:24.059255424 INFO 2025-06-26 06:07:29,861 calibrate.py _nudge_pos():1806 [1] 309: 0.070 -0.0000510 -0.0000671 485 1.61 -4.694 -7.703 2004-11-10T17:47:49.059322112 INFO 2025-06-26 06:07:32,524 calibrate.py _nudge_pos():1862 [1] 575: - - - 2 0.00 - - INFO 2025-06-26 06:07:32,524 calibrate.py _nudge_pos():1868 [1] Points in final series = 14309 WARNING 2025-06-26 06:07:32,539 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:07:32,656 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:07:32,779 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:07:32,867 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:07:32,868 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.315.00/ctd1.nc INFO 2025-06-26 06:07:32,869 calibrate.py _range_qc_combined_nc():898 [1] Setting 2 ctd1_salinity values to NaN INFO 2025-06-26 06:07:32,870 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:07:32,870 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:07:32,984 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:07:33,072 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:07:33,074 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.315.00/ctd2.nc INFO 2025-06-26 06:07:33,075 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 06:07:33,076 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:07:33,076 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 06:07:33,151 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 06:07:33,305 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 06:07:33,310 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 06:07:33,310 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.315.00 ERROR 2025-06-26 06:07:33,310 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.315.00 INFO 2025-06-26 06:07:33,324 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00_cal.nc INFO 2025-06-26 06:07:33,371 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:07:33,375 process.py align():251 [1] Alignment steps for 2004.315.00 INFO 2025-06-26 06:07:33,398 align.py process_cal():139 [1] Processing dorado_2004.315.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.315.00 INFO 2025-06-26 06:07:33,406 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:07:33,408 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:07:33,426 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:07:33,428 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:07:33,445 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:07:33,447 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:07:33,456 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:07:33,457 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:07:33,464 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:07:33,466 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:07:33,482 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:07:33,484 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,500 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:07:33,502 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,519 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:07:33,521 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,537 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,539 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,555 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,557 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,573 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,575 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,590 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,592 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,609 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,611 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,650 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,652 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,668 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,670 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,686 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,688 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,704 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,707 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,723 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,725 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,741 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,744 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,760 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,763 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,779 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,782 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,798 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,800 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,817 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,819 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,836 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,838 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,855 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.315.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:33,857 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:33,877 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:07:33,893 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:07:33,909 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:07:33,927 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 06:07:33,945 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:07:33,960 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00_align.nc INFO 2025-06-26 06:07:34,006 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:07:34,008 process.py resample():273 [1] Resampling steps for 2004.315.00 INFO 2025-06-26 06:07:34,009 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:07:34,031 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00_align.nc mission netCDF file INFO 2025-06-26 06:07:34,036 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00_align.nc mission netCDF file INFO 2025-06-26 06:07:34,037 resample.py get_mission_start_end():1145 [1] navigation: 2004-11-10T17:04:52.665817216 to 2004-11-10T17:52:35.459702272 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:07:34,039 resample.py get_mission_start_end():1145 [1] hs2 : 2004-11-10T17:04:36.226943232 to 2004-11-10T17:52:35.259716096 (0 days 00:00:00.199986176 before mission_end) INFO 2025-06-26 06:07:34,040 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-11-10T17:04:51.235915136 to 2004-11-10T17:52:35.419705216 (0 days 00:00:00.039997056 before mission_end) INFO 2025-06-26 06:07:34,041 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-11-10T17:04:51.245914496 to 2004-11-10T17:52:35.419705216 (0 days 00:00:00.039997056 before mission_end) INFO 2025-06-26 06:07:34,043 resample.py get_mission_start_end():1145 [1] isus : 2004-11-10T17:05:47.312073728 to 2004-11-10T17:52:35.329711232 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 06:07:34,044 resample.py get_mission_start_end():1145 [1] biolume : 2004-11-10T17:04:30.927272064 to 2004-11-10T17:52:34.679721600 (0 days 00:00:00.779980672 before mission_end) INFO 2025-06-26 06:07:34,045 resample.py get_mission_start_end():1145 [1] tailcone : 2004-11-10T17:04:32.127224192 to 2004-11-10T17:52:35.309712640 (0 days 00:00:00.149989632 before mission_end) INFO 2025-06-26 06:07:34,046 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00_align.nc mission netCDF file INFO 2025-06-26 06:07:34,046 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,101 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,113 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,125 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,137 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,149 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,160 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,171 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,182 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,191 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,201 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,211 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,220 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,230 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,240 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,250 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,259 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,271 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,282 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,292 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,303 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,314 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,324 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,334 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,343 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,351 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,361 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,373 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:34,480 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00_1S.nc INFO 2025-06-26 06:07:35,183 create_products.py gulper_odv():401 [1] No gulper times found for 2004.315.00 INFO 2025-06-26 06:07:35,184 process.py archive():337 [1] Archiving steps for 2004.315.00 INFO 2025-06-26 06:07:35,184 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00, BASE_PATH = /data/auv_data INFO 2025-06-26 06:07:35,184 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:07:35,185 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.315.00_1S.nc INFO 2025-06-26 06:07:35,196 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:07:35,196 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.315.00_cal.nc INFO 2025-06-26 06:07:35,217 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:07:35,217 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.315.00_align.nc INFO 2025-06-26 06:07:35,238 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:07:35,250 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004315/2004.315.00 done. INFO 2025-06-26 06:07:35,259 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004315/2004.315.00 done. INFO 2025-06-26 06:07:35,264 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004315/2004.315.00 done. INFO 2025-06-26 06:07:35,272 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004315/2004.315.00 done. INFO 2025-06-26 06:07:35,284 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004315/2004.315.00 done. INFO 2025-06-26 06:07:35,289 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004315/2004.315.00 done. INFO 2025-06-26 06:07:35,296 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004315/2004.315.00 done. INFO 2025-06-26 06:07:35,305 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004315/2004.315.00 done. INFO 2025-06-26 06:07:35,319 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004315/2004.315.00 done. INFO 2025-06-26 06:07:35,319 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:07:35,319 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.315.00/dorado_2004.315.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf