INFO 2025-06-26 06:06:55,391 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:06:55,391 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 8/19/05 - ctdToUse = ctd1 INFO 2025-06-26 06:06:55,392 process.py process_mission():449 [1] Processing AUVCTD mission 2004.314.00 by user docker_user on host 671049448ece INFO 2025-06-26 06:06:55,392 process.py download_process():165 [1] Download and processing steps for 2004.314.00 INFO 2025-06-26 06:06:55,392 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004314/2004.314.00 INFO 2025-06-26 06:06:55,392 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004314/2004.314.00 to /data/auv_data/dorado/missionlogs/2004.314.00 INFO 2025-06-26 06:06:57,528 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.314.00 INFO 2025-06-26 06:06:57,529 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.314.00/ctdDriver.log (5917251 bytes) INFO 2025-06-26 06:06:57,983 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.314.00/ctdDriver2.log (5917069 bytes) INFO 2025-06-26 06:06:58,435 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.314.00/gps.log (46148 bytes) INFO 2025-06-26 06:06:58,448 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.314.00/hydroscatlog.log (4036814 bytes) INFO 2025-06-26 06:06:58,932 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2004.314.00/hydroscatlog.log: [2188 2189] INFO 2025-06-26 06:06:58,944 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.314.00/navigation.log (13110091 bytes) INFO 2025-06-26 06:06:59,984 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.314.00/isuslog.log (347157 bytes) INFO 2025-06-26 06:07:00,027 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2004.314.00/isuslog.log: [1 2 3 4 5 6 7] INFO 2025-06-26 06:07:00,029 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.314.00/parosci.log (4038278 bytes) INFO 2025-06-26 06:07:00,377 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.314.00/tailCone.log (4038811 bytes) INFO 2025-06-26 06:07:00,873 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.314.00/biolume.log (4580620 bytes) INFO 2025-06-26 06:07:01,324 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 06:07:01,565 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.04 seconds WARNING 2025-06-26 06:07:01,565 process.py download_process():196 [1] No lopc.bin file for 2004.314.00 INFO 2025-06-26 06:07:01,565 process.py calibrate():227 [1] Calibration steps for 2004.314.00 INFO 2025-06-26 06:07:01,721 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:07:01,723 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:07:03,268 calibrate.py _nudge_pos():1806 [1] 178: 0.090 0.0018542 0.0066678 11325 37.75 7.295 32.732 2004-11-09T18:22:29.553115648 INFO 2025-06-26 06:07:03,908 calibrate.py _nudge_pos():1806 [1] 247: 0.110 0.0024076 0.0043121 11390 37.96 9.417 21.048 2004-11-09T19:01:35.552403456 INFO 2025-06-26 06:07:04,410 calibrate.py _nudge_pos():1806 [1] 300: 0.100 0.0038151 0.0025517 11350 37.83 14.974 12.499 2004-11-09T19:40:17.553335680 INFO 2025-06-26 06:07:04,826 calibrate.py _nudge_pos():1806 [1] 344: 0.100 0.0029058 0.0025889 11425 38.08 11.329 12.598 2004-11-09T20:19:05.553856640 INFO 2025-06-26 06:07:05,486 calibrate.py _nudge_pos():1806 [1] 413: 0.120 0.0024047 0.0024755 11390 37.96 9.403 12.083 2004-11-09T20:58:11.553144704 INFO 2025-06-26 06:07:06,133 calibrate.py _nudge_pos():1806 [1] 479: 0.100 0.0021737 0.0019017 11315 37.71 8.555 9.344 2004-11-09T21:36:59.553665664 INFO 2025-06-26 06:07:06,795 calibrate.py _nudge_pos():1806 [1] 548: 0.120 0.0032305 0.0003908 9470 31.56 15.192 2.294 2004-11-09T22:09:41.549259904 INFO 2025-06-26 06:07:07,240 calibrate.py _nudge_pos():1806 [1] 595: 0.110 0.0003135 -0.0002250 3370 11.23 4.143 -3.713 2004-11-09T22:21:41.549936256 INFO 2025-06-26 06:07:07,560 calibrate.py _nudge_pos():1862 [1] 608: - - - 3 0.01 - - INFO 2025-06-26 06:07:07,561 calibrate.py _nudge_pos():1868 [1] Points in final series = 84031 WARNING 2025-06-26 06:07:07,629 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:07:16,610 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:07:17,223 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:07:17,717 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:07:17,719 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.314.00/ctd1.nc INFO 2025-06-26 06:07:17,720 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:07:17,721 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:07:17,721 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:07:18,303 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:07:18,798 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:07:18,800 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.314.00/ctd2.nc INFO 2025-06-26 06:07:18,802 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 06:07:18,802 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:07:18,802 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 06:07:19,357 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 06:07:20,305 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: 0 seconds ERROR 2025-06-26 06:07:20,311 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 06:07:20,311 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.314.00 ERROR 2025-06-26 06:07:20,311 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.314.00 INFO 2025-06-26 06:07:20,378 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00_cal.nc INFO 2025-06-26 06:07:20,463 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:07:20,469 process.py align():251 [1] Alignment steps for 2004.314.00 INFO 2025-06-26 06:07:20,498 align.py process_cal():139 [1] Processing dorado_2004.314.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.314.00 INFO 2025-06-26 06:07:20,524 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:07:20,528 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:07:20,594 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:07:20,598 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:07:20,659 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:07:20,664 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:07:20,701 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:07:20,701 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:07:20,727 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:07:20,732 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:07:20,796 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:07:20,800 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:20,855 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:07:20,859 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:20,914 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:07:20,918 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:20,972 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:20,976 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,035 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,040 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,093 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,097 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,153 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,157 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,211 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,215 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,272 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,276 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,331 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,335 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,391 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,395 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,449 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,453 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,511 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,514 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,569 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,573 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,628 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,632 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,686 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,691 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,746 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,750 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,806 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,810 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,866 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,870 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,925 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.314.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:07:21,928 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:07:21,989 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:07:22,029 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:07:22,068 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:07:22,109 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 06:07:22,153 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:07:22,197 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00_align.nc INFO 2025-06-26 06:07:22,272 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:07:22,275 process.py resample():273 [1] Resampling steps for 2004.314.00 INFO 2025-06-26 06:07:22,275 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:07:22,301 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00_align.nc mission netCDF file INFO 2025-06-26 06:07:22,307 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00_align.nc mission netCDF file INFO 2025-06-26 06:07:22,308 resample.py get_mission_start_end():1145 [1] navigation: 2004-11-09T17:42:09.168923136 to 2004-11-09T22:22:15.157634048 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 06:07:22,310 resample.py get_mission_start_end():1145 [1] hs2 : 2004-11-09T17:41:51.980100608 to 2004-11-09T22:22:15.227629440 (0 days 00:00:00.039997056 before mission_end) INFO 2025-06-26 06:07:22,311 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-11-09T17:42:06.749089024 to 2004-11-09T22:22:15.157634048 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 06:07:22,313 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-11-09T17:42:06.979073280 to 2004-11-09T22:22:15.157634048 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 06:07:22,314 resample.py get_mission_start_end():1145 [1] isus : 2004-11-09T17:42:48.926199680 to 2004-11-09T22:22:14.557675136 (0 days 00:00:00.709951360 before mission_end) INFO 2025-06-26 06:07:22,316 resample.py get_mission_start_end():1145 [1] biolume : 2004-11-09T17:41:47.190394624 to 2004-11-09T22:22:14.747628032 (0 days 00:00:00.519998464 before mission_end) INFO 2025-06-26 06:07:22,317 resample.py get_mission_start_end():1145 [1] tailcone : 2004-11-09T17:41:47.450411136 to 2004-11-09T22:22:15.267626496 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:07:22,318 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00_align.nc mission netCDF file INFO 2025-06-26 06:07:22,318 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,517 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,551 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,584 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,618 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,648 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,678 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,707 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,735 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,762 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,789 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,815 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,843 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,869 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,896 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,922 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,948 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:22,977 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:23,004 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:23,032 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:23,059 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:23,086 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:23,113 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:23,127 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:23,140 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:23,152 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:23,166 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:23,197 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:07:23,385 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00_1S.nc INFO 2025-06-26 06:07:24,805 create_products.py gulper_odv():401 [1] No gulper times found for 2004.314.00 INFO 2025-06-26 06:07:24,806 process.py archive():337 [1] Archiving steps for 2004.314.00 INFO 2025-06-26 06:07:24,806 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00, BASE_PATH = /data/auv_data INFO 2025-06-26 06:07:24,807 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:07:24,808 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.314.00_1S.nc INFO 2025-06-26 06:07:24,829 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:07:24,830 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.314.00_cal.nc INFO 2025-06-26 06:07:24,909 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:07:24,910 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.314.00_align.nc INFO 2025-06-26 06:07:24,999 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:07:25,027 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004314/2004.314.00 done. INFO 2025-06-26 06:07:25,053 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004314/2004.314.00 done. INFO 2025-06-26 06:07:25,058 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004314/2004.314.00 done. INFO 2025-06-26 06:07:25,078 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004314/2004.314.00 done. INFO 2025-06-26 06:07:25,122 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004314/2004.314.00 done. INFO 2025-06-26 06:07:25,130 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004314/2004.314.00 done. INFO 2025-06-26 06:07:25,149 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004314/2004.314.00 done. INFO 2025-06-26 06:07:25,171 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004314/2004.314.00 done. INFO 2025-06-26 06:07:25,232 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004314/2004.314.00 done. INFO 2025-06-26 06:07:25,233 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:07:25,233 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.314.00/dorado_2004.314.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf