INFO 2025-06-26 06:06:19,267 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:06:19,267 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Hardware failure, no ctdDriver2 data. Flow was bad for both CTDs. Re-portaled 8/19/05 Failed because no ctdDriver2.cfg for 296.03. - ctdToUse = ctd1 INFO 2025-06-26 06:06:19,267 process.py process_mission():449 [1] Processing BIOLUME mission 2004.296.03 by user docker_user on host 671049448ece INFO 2025-06-26 06:06:19,267 process.py download_process():165 [1] Download and processing steps for 2004.296.03 INFO 2025-06-26 06:06:19,267 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004296/2004.296.03 INFO 2025-06-26 06:06:19,267 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004296/2004.296.03 to /data/auv_data/dorado/missionlogs/2004.296.03 INFO 2025-06-26 06:06:21,383 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.296.03 INFO 2025-06-26 06:06:21,383 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.296.03/ctdDriver.log (5825115 bytes) INFO 2025-06-26 06:06:21,822 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.296.03/gps.log (47876 bytes) INFO 2025-06-26 06:06:21,836 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.296.03/hydroscatlog.log (3981854 bytes) INFO 2025-06-26 06:06:22,316 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.296.03/navigation.log (12931627 bytes) INFO 2025-06-26 06:06:23,301 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.296.03/isuslog.log (340789 bytes) INFO 2025-06-26 06:06:23,339 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.296.03/parosci.log (3983894 bytes) INFO 2025-06-26 06:06:23,686 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.296.03/tailCone.log (3984043 bytes) INFO 2025-06-26 06:06:24,190 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.296.03/biolume.log (4518604 bytes) INFO 2025-06-26 06:06:24,636 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 06:06:24,876 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.49 seconds WARNING 2025-06-26 06:06:24,876 process.py download_process():196 [1] No lopc.bin file for 2004.296.03 INFO 2025-06-26 06:06:24,876 process.py calibrate():227 [1] Calibration steps for 2004.296.03 INFO 2025-06-26 06:06:25,031 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:06:25,033 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:06:26,406 calibrate.py _nudge_pos():1806 [1] 161: 0.170 -0.0001007 0.0000389 725 2.41 -6.183 2.990 2004-10-22T01:36:01.057082240 INFO 2025-06-26 06:06:27,204 calibrate.py _nudge_pos():1806 [1] 247: 0.170 -0.0016025 0.0005597 10105 33.68 -7.050 3.079 2004-10-22T02:11:07.062810880 INFO 2025-06-26 06:06:27,770 calibrate.py _nudge_pos():1806 [1] 305: 0.170 -0.0015310 0.0006517 10515 35.05 -6.476 3.445 2004-10-22T02:47:07.064840576 INFO 2025-06-26 06:06:28,227 calibrate.py _nudge_pos():1806 [1] 353: 0.170 -0.0012225 -0.0002802 10475 34.91 -5.192 -1.487 2004-10-22T03:22:49.058104064 INFO 2025-06-26 06:06:28,669 calibrate.py _nudge_pos():1806 [1] 400: 0.170 -0.0004209 -0.0019302 10837 36.13 -1.728 -9.900 2004-10-22T03:59:43.066433920 INFO 2025-06-26 06:06:29,041 calibrate.py _nudge_pos():1806 [1] 438: 0.170 0.0000393 -0.0000040 15 0.05 124.854 -16.011 2004-10-22T04:00:23.063693952 INFO 2025-06-26 06:06:29,070 calibrate.py _nudge_pos():1806 [1] 441: 0.170 -0.0033155 -0.0008473 10680 35.60 -13.822 -4.410 2004-10-22T04:36:01.057231488 INFO 2025-06-26 06:06:29,611 calibrate.py _nudge_pos():1806 [1] 497: 0.180 -0.0054614 -0.0001733 10555 35.18 -23.045 -0.913 2004-10-22T05:12:07.058850048 INFO 2025-06-26 06:06:30,061 calibrate.py _nudge_pos():1806 [1] 544: 0.190 -0.0018628 0.0006276 4300 14.33 -19.300 8.116 2004-10-22T05:27:13.056785152 INFO 2025-06-26 06:06:30,475 calibrate.py _nudge_pos():1806 [1] 587: 0.180 -0.0001607 0.0006231 11575 38.58 -0.619 2.993 2004-10-22T06:06:30.065318784 INFO 2025-06-26 06:06:31,111 calibrate.py _nudge_pos():1862 [1] 632: - - - 3 0.01 - - INFO 2025-06-26 06:06:31,112 calibrate.py _nudge_pos():1868 [1] Points in final series = 82877 WARNING 2025-06-26 06:06:31,179 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:06:31,779 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:06:32,400 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 52 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:06:32,883 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 52 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:06:32,885 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.296.03/ctd1.nc INFO 2025-06-26 06:06:32,886 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:06:32,887 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:06:32,887 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:06:32,915 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 06:06:33,842 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 06:06:33,848 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 06:06:33,848 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.296.03 ERROR 2025-06-26 06:06:33,848 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.296.03 INFO 2025-06-26 06:06:33,915 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03_cal.nc INFO 2025-06-26 06:06:33,985 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:06:33,989 process.py align():251 [1] Alignment steps for 2004.296.03 INFO 2025-06-26 06:06:34,015 align.py process_cal():139 [1] Processing dorado_2004.296.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.296.03 INFO 2025-06-26 06:06:34,041 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:06:34,045 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:06:34,112 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:06:34,117 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:06:34,179 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:06:34,184 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:06:34,222 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:06:34,222 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:06:34,249 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:06:34,254 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:06:34,317 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:06:34,322 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:34,376 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:06:34,381 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:34,435 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:06:34,440 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:34,495 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:06:34,499 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:34,554 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:06:34,558 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:34,613 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:06:34,617 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:34,673 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:06:34,677 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:34,732 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:06:34,736 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:34,791 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:06:34,795 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:34,853 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:06:34,858 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:34,918 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:06:34,923 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:34,979 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:06:34,984 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:35,040 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.296.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:06:35,044 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:06:35,104 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:06:35,143 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:06:35,182 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.64 INFO 2025-06-26 06:06:35,223 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 06:06:35,266 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:06:35,311 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03_align.nc INFO 2025-06-26 06:06:35,376 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:06:35,378 process.py resample():273 [1] Resampling steps for 2004.296.03 INFO 2025-06-26 06:06:35,378 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:06:35,401 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03_align.nc mission netCDF file INFO 2025-06-26 06:06:35,406 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03_align.nc mission netCDF file INFO 2025-06-26 06:06:35,408 resample.py get_mission_start_end():1145 [1] navigation: 2004-10-22T01:31:17.866482048 to 2004-10-22T06:07:35.660825216 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 06:06:35,410 resample.py get_mission_start_end():1145 [1] hs2 : 2004-10-22T01:30:59.987706624 to 2004-10-22T06:07:35.470838272 (0 days 00:00:00.239983616 before mission_end) INFO 2025-06-26 06:06:35,412 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-10-22T01:31:49.014348288 to 2004-10-22T06:07:35.640826752 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 06:06:35,413 resample.py get_mission_start_end():1145 [1] isus : 2004-10-22T01:32:12.012772736 to 2004-10-22T06:07:35.600829312 (0 days 00:00:00.109992576 before mission_end) INFO 2025-06-26 06:06:35,415 resample.py get_mission_start_end():1145 [1] biolume : 2004-10-22T01:30:55.237997824 to 2004-10-22T06:07:34.810849152 (0 days 00:00:00.899972736 before mission_end) INFO 2025-06-26 06:06:35,417 resample.py get_mission_start_end():1145 [1] tailcone : 2004-10-22T01:30:55.658003328 to 2004-10-22T06:07:35.710821888 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:06:35,417 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03_align.nc mission netCDF file INFO 2025-06-26 06:06:35,418 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,614 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,648 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,682 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,717 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,747 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,778 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,809 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,839 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,867 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,894 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,921 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,947 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:35,977 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:36,006 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:36,033 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:36,060 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:36,075 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:36,088 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:36,101 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:36,117 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:36,150 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:06:36,321 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03_1S.nc INFO 2025-06-26 06:06:37,420 create_products.py gulper_odv():401 [1] No gulper times found for 2004.296.03 INFO 2025-06-26 06:06:37,420 process.py archive():337 [1] Archiving steps for 2004.296.03 INFO 2025-06-26 06:06:37,420 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03, BASE_PATH = /data/auv_data INFO 2025-06-26 06:06:37,420 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:06:37,421 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.296.03_1S.nc INFO 2025-06-26 06:06:37,440 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:06:37,441 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.296.03_cal.nc INFO 2025-06-26 06:06:37,508 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:06:37,509 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.296.03_align.nc INFO 2025-06-26 06:06:37,574 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:06:37,597 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004296/2004.296.03 done. INFO 2025-06-26 06:06:37,602 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004296/2004.296.03 done. INFO 2025-06-26 06:06:37,619 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004296/2004.296.03 done. INFO 2025-06-26 06:06:37,661 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004296/2004.296.03 done. INFO 2025-06-26 06:06:37,668 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004296/2004.296.03 done. INFO 2025-06-26 06:06:37,686 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004296/2004.296.03 done. INFO 2025-06-26 06:06:37,709 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004296/2004.296.03 done. INFO 2025-06-26 06:06:37,763 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004296/2004.296.03 done. INFO 2025-06-26 06:06:37,763 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:06:37,763 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.296.03/dorado_2004.296.03_processing.log /Volumes/AUVCTD/surveys/2004/netcdf