INFO 2025-06-26 06:04:44,770 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:04:44,770 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Added 11 March 2005 Re-portaled 8/19/05 - ctdToUse = ctd1 INFO 2025-06-26 06:04:44,770 process.py process_mission():449 [1] Processing AUVCTD mission 2004.275.00 by user docker_user on host 671049448ece INFO 2025-06-26 06:04:44,770 process.py download_process():165 [1] Download and processing steps for 2004.275.00 INFO 2025-06-26 06:04:44,770 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004275/2004.275.00 INFO 2025-06-26 06:04:44,770 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004275/2004.275.00 to /data/auv_data/dorado/missionlogs/2004.275.00 INFO 2025-06-26 06:04:47,201 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.275.00 INFO 2025-06-26 06:04:47,201 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.275.00/ctdDriver.log (7877627 bytes) INFO 2025-06-26 06:04:47,847 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.275.00/ctdDriver2.log (7877533 bytes) INFO 2025-06-26 06:04:48,466 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.275.00/gps.log (85172 bytes) INFO 2025-06-26 06:04:48,485 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.275.00/hydroscatlog.log (5372474 bytes) INFO 2025-06-26 06:04:49,130 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2004.275.00/hydroscatlog.log: [37755 72707] INFO 2025-06-26 06:04:49,151 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.275.00/navigation.log (17452819 bytes) INFO 2025-06-26 06:04:50,520 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.275.00/isuslog.log (571452 bytes) INFO 2025-06-26 06:04:50,598 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.275.00/parosci.log (5374838 bytes) INFO 2025-06-26 06:04:51,092 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.275.00/tailCone.log (5374795 bytes) INFO 2025-06-26 06:04:51,776 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.275.00/biolume.log (6095388 bytes) INFO 2025-06-26 06:04:52,376 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 06:04:52,706 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.51 seconds WARNING 2025-06-26 06:04:52,707 process.py download_process():196 [1] No lopc.bin file for 2004.275.00 INFO 2025-06-26 06:04:52,707 process.py calibrate():227 [1] Calibration steps for 2004.275.00 INFO 2025-06-26 06:04:52,918 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:04:52,920 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:04:54,572 calibrate.py _nudge_pos():1806 [1] 180: 0.080 0.0006986 0.0008196 7720 25.73 4.021 5.902 2004-10-01T16:19:33.784450048 INFO 2025-06-26 06:04:55,553 calibrate.py _nudge_pos():1806 [1] 279: 0.080 0.0004444 0.0005127 5300 17.66 3.726 5.379 2004-10-01T16:38:51.785121664 INFO 2025-06-26 06:04:56,406 calibrate.py _nudge_pos():1806 [1] 362: 0.080 -0.0000662 0.0002992 7660 25.53 -0.384 2.172 2004-10-01T17:05:45.784555136 INFO 2025-06-26 06:04:56,429 calibrate.py _nudge_pos():1806 [1] 364: 0.090 -0.0000642 0.0002910 50 0.16 -58.237 330.150 2004-10-01T17:05:56.783801600 INFO 2025-06-26 06:04:57,389 calibrate.py _nudge_pos():1806 [1] 459: 0.100 -0.0000755 0.0002288 5085 16.95 -0.660 2.502 2004-10-01T17:24:27.787692544 INFO 2025-06-26 06:04:58,212 calibrate.py _nudge_pos():1806 [1] 542: 0.090 0.0007904 0.0010399 10387 34.63 3.381 5.565 2004-10-01T18:00:27.789722496 INFO 2025-06-26 06:04:59,201 calibrate.py _nudge_pos():1806 [1] 638: 0.100 0.0004340 0.0004494 5675 18.91 3.400 4.403 2004-10-01T18:20:57.785461888 INFO 2025-06-26 06:05:00,049 calibrate.py _nudge_pos():1806 [1] 720: 0.110 -0.0003058 0.0010386 13365 44.55 -1.017 4.320 2004-10-01T19:06:51.786799872 INFO 2025-06-26 06:05:00,866 calibrate.py _nudge_pos():1806 [1] 800: 0.100 0.0007099 0.0011028 10525 35.08 2.999 5.825 2004-10-01T19:43:15.787185664 INFO 2025-06-26 06:05:01,872 calibrate.py _nudge_pos():1806 [1] 897: 0.090 0.0003835 0.0005093 5937 19.80 2.871 4.767 2004-10-01T20:04:39.789225344 INFO 2025-06-26 06:05:02,724 calibrate.py _nudge_pos():1806 [1] 979: 0.100 -0.0009138 0.0014788 17595 58.65 -2.310 4.672 2004-10-01T21:04:39.782609024 INFO 2025-06-26 06:05:03,589 calibrate.py _nudge_pos():1806 [1] 1062: 0.120 0.0009750 0.0015784 16630 55.43 2.609 5.276 2004-10-01T22:01:27.789144576 INFO 2025-06-26 06:05:04,507 calibrate.py _nudge_pos():1806 [1] 1151: 0.090 0.0000477 0.0000215 260 0.86 8.193 4.604 2004-10-01T22:03:47.789553920 INFO 2025-06-26 06:05:04,706 calibrate.py _nudge_pos():1862 [1] 1150: - - - 2 0.00 - - INFO 2025-06-26 06:05:04,706 calibrate.py _nudge_pos():1868 [1] Points in final series = 111869 WARNING 2025-06-26 06:05:04,799 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:05:17,136 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:05:18,016 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:05:18,678 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:05:18,681 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.275.00/ctd1.nc INFO 2025-06-26 06:05:18,682 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:05:18,683 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:05:18,683 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:05:19,466 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:05:20,126 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:05:20,129 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.275.00/ctd2.nc INFO 2025-06-26 06:05:20,130 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 06:05:20,131 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:05:20,131 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 06:05:20,168 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 06:05:21,226 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [163920 163921 163922 163923 163924 163925 163926 163927 163928 163929 163930 163931 163932 163933 163934 163935 163936 163937 163938 163939 163940 163941 163942 163943 163944 163945 163946 163947 163948 163949] INFO 2025-06-26 06:05:21,422 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: 0 seconds ERROR 2025-06-26 06:05:21,428 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 06:05:21,428 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.275.00 ERROR 2025-06-26 06:05:21,429 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.275.00 INFO 2025-06-26 06:05:21,519 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00_cal.nc INFO 2025-06-26 06:05:21,625 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:05:21,631 process.py align():251 [1] Alignment steps for 2004.275.00 INFO 2025-06-26 06:05:21,661 align.py process_cal():139 [1] Processing dorado_2004.275.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.275.00 INFO 2025-06-26 06:05:21,696 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:05:21,700 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:05:21,785 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:05:21,791 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:05:21,871 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:05:21,876 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:05:21,925 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:05:21,925 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:05:21,957 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:05:21,962 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:05:22,041 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:05:22,046 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,117 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:05:22,123 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,195 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:05:22,199 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,270 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:22,275 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,353 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:22,358 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,427 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:22,432 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,503 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:22,507 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,577 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:22,582 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,652 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:22,657 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,727 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:22,732 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,804 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:22,809 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,881 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:22,885 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:22,959 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:22,963 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:23,034 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:23,038 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:23,108 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:23,113 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:23,182 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:23,188 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:23,257 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:23,261 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:23,332 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:23,336 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:23,407 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:23,412 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:23,482 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.275.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:05:23,486 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:05:23,562 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.56 INFO 2025-06-26 06:05:23,611 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.56 INFO 2025-06-26 06:05:23,661 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.56 INFO 2025-06-26 06:05:23,714 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 06:05:23,768 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:05:23,823 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00_align.nc INFO 2025-06-26 06:05:23,910 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:05:23,913 process.py resample():273 [1] Resampling steps for 2004.275.00 INFO 2025-06-26 06:05:23,913 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:05:23,940 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00_align.nc mission netCDF file INFO 2025-06-26 06:05:23,947 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00_align.nc mission netCDF file INFO 2025-06-26 06:05:23,948 resample.py get_mission_start_end():1145 [1] navigation: 2004-10-01T15:51:12.391003648 to 2004-10-01T22:04:07.188225024 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 06:05:23,950 resample.py get_mission_start_end():1145 [1] hs2 : 2004-10-01T15:50:55.702146816 to 2004-10-01T22:04:07.258220160 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 06:05:23,951 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-10-01T15:51:09.921172864 to 2004-10-01T22:04:07.168226304 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 06:05:23,953 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-10-01T15:51:10.281148160 to 2004-10-01T22:04:07.248220928 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 06:05:23,954 resample.py get_mission_start_end():1145 [1] isus : 2004-10-01T13:16:24.000000000 to 2004-10-01T22:04:03.000000000 (0 days 00:00:04.278218752 before mission_end) INFO 2025-06-26 06:05:23,956 resample.py get_mission_start_end():1145 [1] biolume : 2004-10-01T15:50:50.532466688 to 2004-10-01T22:04:06.638228480 (0 days 00:00:00.639990272 before mission_end) INFO 2025-06-26 06:05:23,957 resample.py get_mission_start_end():1145 [1] tailcone : 2004-10-01T15:50:50.522501760 to 2004-10-01T22:04:07.278218752 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:05:23,958 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00_align.nc mission netCDF file INFO 2025-06-26 06:05:23,958 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,207 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,250 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,292 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,334 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,371 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,409 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,446 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,482 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,515 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,548 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,582 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,617 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,650 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,683 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,716 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,750 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,787 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,822 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,857 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,891 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,926 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,960 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,978 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:24,994 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:25,009 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:25,027 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:25,068 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:05:25,293 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00_1S.nc INFO 2025-06-26 06:05:26,727 create_products.py gulper_odv():401 [1] No gulper times found for 2004.275.00 INFO 2025-06-26 06:05:26,727 process.py archive():337 [1] Archiving steps for 2004.275.00 INFO 2025-06-26 06:05:26,727 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00, BASE_PATH = /data/auv_data INFO 2025-06-26 06:05:26,727 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:05:26,729 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.275.00_1S.nc INFO 2025-06-26 06:05:26,753 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:05:26,754 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.275.00_cal.nc INFO 2025-06-26 06:05:26,853 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:05:26,854 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.275.00_align.nc INFO 2025-06-26 06:05:26,954 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:05:26,985 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004275/2004.275.00 done. INFO 2025-06-26 06:05:27,012 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004275/2004.275.00 done. INFO 2025-06-26 06:05:27,018 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004275/2004.275.00 done. INFO 2025-06-26 06:05:27,038 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004275/2004.275.00 done. INFO 2025-06-26 06:05:27,093 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004275/2004.275.00 done. INFO 2025-06-26 06:05:27,100 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004275/2004.275.00 done. INFO 2025-06-26 06:05:27,121 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004275/2004.275.00 done. INFO 2025-06-26 06:05:27,146 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004275/2004.275.00 done. INFO 2025-06-26 06:05:27,216 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004275/2004.275.00 done. INFO 2025-06-26 06:05:27,218 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:05:27,218 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.275.00/dorado_2004.275.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf