INFO 2025-06-26 06:04:03,848 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:04:03,848 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Added 11 March 2005 Re-portaled 8/19/05 - ctdToUse = ctd1 INFO 2025-06-26 06:04:03,849 process.py process_mission():449 [1] Processing AUVCTD mission 2004.274.00 by user docker_user on host 671049448ece INFO 2025-06-26 06:04:03,849 process.py download_process():165 [1] Download and processing steps for 2004.274.00 INFO 2025-06-26 06:04:03,849 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004274/2004.274.00 INFO 2025-06-26 06:04:03,849 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004274/2004.274.00 to /data/auv_data/dorado/missionlogs/2004.274.00 INFO 2025-06-26 06:04:06,759 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.274.00 INFO 2025-06-26 06:04:06,760 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.274.00/ctdDriver.log (7673203 bytes) INFO 2025-06-26 06:04:07,329 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.274.00/ctdDriver2.log (7673461 bytes) INFO 2025-06-26 06:04:07,913 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.274.00/gps.log (82004 bytes) INFO 2025-06-26 06:04:07,931 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.274.00/hydroscatlog.log (5233514 bytes) INFO 2025-06-26 06:04:08,536 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2004.274.00/hydroscatlog.log: [ 4648 24887 24888] INFO 2025-06-26 06:04:08,550 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.274.00/navigation.log (17000731 bytes) INFO 2025-06-26 06:04:09,793 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.274.00/isuslog.log (458236 bytes) INFO 2025-06-26 06:04:09,842 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.274.00/parosci.log (5236262 bytes) INFO 2025-06-26 06:04:10,297 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.274.00/tailCone.log (5234971 bytes) INFO 2025-06-26 06:04:10,941 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.274.00/biolume.log (5937628 bytes) INFO 2025-06-26 06:04:11,537 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 06:04:11,849 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.09 seconds WARNING 2025-06-26 06:04:11,849 process.py download_process():196 [1] No lopc.bin file for 2004.274.00 INFO 2025-06-26 06:04:11,849 process.py calibrate():227 [1] Calibration steps for 2004.274.00 INFO 2025-06-26 06:04:12,044 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:04:12,047 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:04:13,600 calibrate.py _nudge_pos():1806 [1] 180: 0.070 0.0005814 0.0008267 7788 25.96 3.317 5.900 2004-09-30T16:03:53.084822656 INFO 2025-06-26 06:04:14,272 calibrate.py _nudge_pos():1806 [1] 251: 0.060 -0.0000444 0.0002689 15 0.05 -140.938 1067.931 2004-09-30T16:05:06.089821312 INFO 2025-06-26 06:04:14,534 calibrate.py _nudge_pos():1806 [1] 279: 0.070 0.0003015 0.0003658 3910 13.03 3.427 5.202 2004-09-30T16:18:35.084401664 INFO 2025-06-26 06:04:15,304 calibrate.py _nudge_pos():1806 [1] 361: 0.060 -0.0001387 0.0001790 7872 26.25 -0.783 1.264 2004-09-30T16:46:11.090957440 INFO 2025-06-26 06:04:16,032 calibrate.py _nudge_pos():1806 [1] 438: 0.070 -0.0000164 -0.0000444 15 0.05 -52.094 -176.405 2004-09-30T16:47:30.085545728 INFO 2025-06-26 06:04:16,214 calibrate.py _nudge_pos():1806 [1] 457: 0.060 -0.0000122 0.0000966 5095 16.98 -0.107 1.054 2004-09-30T17:04:47.084506496 INFO 2025-06-26 06:04:17,001 calibrate.py _nudge_pos():1806 [1] 539: 0.060 0.0007654 0.0010159 10215 34.05 3.330 5.529 2004-09-30T17:40:11.089002112 INFO 2025-06-26 06:04:17,904 calibrate.py _nudge_pos():1806 [1] 630: 0.060 0.0004129 0.0004817 5340 17.80 3.438 5.015 2004-09-30T17:59:29.089673728 INFO 2025-06-26 06:04:18,698 calibrate.py _nudge_pos():1806 [1] 711: 0.070 -0.0002703 0.0009152 13130 43.76 -0.915 3.875 2004-09-30T18:44:35.084300544 INFO 2025-06-26 06:04:19,468 calibrate.py _nudge_pos():1806 [1] 791: 0.070 0.0007012 0.0010492 10404 34.68 2.997 5.606 2004-09-30T19:20:35.086330112 INFO 2025-06-26 06:04:20,275 calibrate.py _nudge_pos():1806 [1] 870: 0.060 0.0003297 0.0004542 5430 18.10 2.700 4.651 2004-09-30T19:39:59.086590720 INFO 2025-06-26 06:04:21,048 calibrate.py _nudge_pos():1806 [1] 947: 0.070 -0.0008128 0.0014982 17378 57.93 -2.080 4.792 2004-09-30T20:39:11.083262208 INFO 2025-06-26 06:04:21,819 calibrate.py _nudge_pos():1806 [1] 1025: 0.070 0.0009667 0.0015378 16355 54.51 2.630 5.227 2004-09-30T21:34:59.083908608 INFO 2025-06-26 06:04:22,632 calibrate.py _nudge_pos():1806 [1] 1104: 0.070 -0.0000451 0.0000616 570 1.90 -3.523 6.022 2004-09-30T21:38:11.090754944 INFO 2025-06-26 06:04:22,865 calibrate.py _nudge_pos():1862 [1] 1106: - - - 1 0.00 - - INFO 2025-06-26 06:04:22,865 calibrate.py _nudge_pos():1868 [1] Points in final series = 108971 WARNING 2025-06-26 06:04:22,955 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:04:34,677 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:04:35,478 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 20 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:04:36,125 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 20 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:04:36,127 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.274.00/ctd1.nc INFO 2025-06-26 06:04:36,129 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:04:36,129 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:04:36,129 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:04:36,907 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:04:37,539 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:04:37,542 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.274.00/ctd2.nc INFO 2025-06-26 06:04:37,543 calibrate.py _range_qc_combined_nc():898 [1] Setting 2 ctd2_salinity values to NaN INFO 2025-06-26 06:04:37,543 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:04:37,543 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 06:04:37,577 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 06:04:38,773 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 06:04:38,779 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 06:04:38,779 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.274.00 ERROR 2025-06-26 06:04:38,779 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.274.00 INFO 2025-06-26 06:04:38,865 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00_cal.nc INFO 2025-06-26 06:04:38,959 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:04:38,964 process.py align():251 [1] Alignment steps for 2004.274.00 INFO 2025-06-26 06:04:38,993 align.py process_cal():139 [1] Processing dorado_2004.274.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.274.00 INFO 2025-06-26 06:04:39,027 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:04:39,031 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:04:39,111 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:04:39,116 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:04:39,192 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:04:39,197 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:04:39,245 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:04:39,245 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:04:39,277 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:04:39,281 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:04:39,356 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:04:39,360 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:39,429 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:04:39,433 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:39,501 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:04:39,505 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:39,573 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:39,577 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:39,645 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:39,649 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:39,716 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:39,722 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:39,791 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:39,796 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:39,864 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:39,869 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:39,938 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:39,943 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,020 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:40,026 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,097 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:40,102 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,183 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:40,188 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,259 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:40,264 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,332 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:40,337 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,406 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:40,411 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,481 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:40,486 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,556 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:40,561 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,629 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:40,634 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,703 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:40,708 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,777 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.274.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:04:40,781 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:04:40,857 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.55 INFO 2025-06-26 06:04:40,906 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.55 INFO 2025-06-26 06:04:40,955 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.55 INFO 2025-06-26 06:04:41,006 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 06:04:41,060 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:04:41,112 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00_align.nc INFO 2025-06-26 06:04:41,197 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:04:41,200 process.py resample():273 [1] Resampling steps for 2004.274.00 INFO 2025-06-26 06:04:41,200 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:04:41,227 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00_align.nc mission netCDF file INFO 2025-06-26 06:04:41,233 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00_align.nc mission netCDF file INFO 2025-06-26 06:04:41,235 resample.py get_mission_start_end():1145 [1] navigation: 2004-09-30T15:35:17.692335104 to 2004-09-30T21:38:33.289234432 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 06:04:41,236 resample.py get_mission_start_end():1145 [1] hs2 : 2004-09-30T15:35:00.923483904 to 2004-09-30T21:38:33.229238528 (0 days 00:00:00.159989120 before mission_end) INFO 2025-06-26 06:04:41,238 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-09-30T15:35:16.872391168 to 2004-09-30T21:38:33.389227648 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:04:41,240 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-09-30T15:35:15.842461824 to 2004-09-30T21:38:33.329231744 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 06:04:41,241 resample.py get_mission_start_end():1145 [1] isus : 2004-09-30T14:28:13.000000000 to 2004-09-30T21:38:28.000000000 (0 days 00:00:05.389227648 before mission_end) INFO 2025-06-26 06:04:41,242 resample.py get_mission_start_end():1145 [1] biolume : 2004-09-30T15:34:55.793801088 to 2004-09-30T21:38:31.929293440 (0 days 00:00:01.459934208 before mission_end) INFO 2025-06-26 06:04:41,244 resample.py get_mission_start_end():1145 [1] tailcone : 2004-09-30T15:34:56.593780480 to 2004-09-30T21:38:33.349230336 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 06:04:41,245 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00_align.nc mission netCDF file INFO 2025-06-26 06:04:41,245 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,488 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,531 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,572 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,614 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,651 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,689 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,726 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,762 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,795 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,828 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,861 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,893 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,925 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,958 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:41,991 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,024 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,061 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,097 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,131 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,165 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,199 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,234 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,251 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,266 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,280 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,296 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,339 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:04:42,569 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00_1S.nc INFO 2025-06-26 06:04:44,246 create_products.py gulper_odv():401 [1] No gulper times found for 2004.274.00 INFO 2025-06-26 06:04:44,246 process.py archive():337 [1] Archiving steps for 2004.274.00 INFO 2025-06-26 06:04:44,246 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00, BASE_PATH = /data/auv_data INFO 2025-06-26 06:04:44,248 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:04:44,249 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.274.00_1S.nc INFO 2025-06-26 06:04:44,273 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:04:44,273 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.274.00_cal.nc INFO 2025-06-26 06:04:44,369 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:04:44,370 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.274.00_align.nc INFO 2025-06-26 06:04:44,464 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:04:44,493 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004274/2004.274.00 done. INFO 2025-06-26 06:04:44,520 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004274/2004.274.00 done. INFO 2025-06-26 06:04:44,526 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004274/2004.274.00 done. INFO 2025-06-26 06:04:44,547 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004274/2004.274.00 done. INFO 2025-06-26 06:04:44,604 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004274/2004.274.00 done. INFO 2025-06-26 06:04:44,612 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004274/2004.274.00 done. INFO 2025-06-26 06:04:44,632 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004274/2004.274.00 done. INFO 2025-06-26 06:04:44,659 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004274/2004.274.00 done. INFO 2025-06-26 06:04:44,728 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004274/2004.274.00 done. INFO 2025-06-26 06:04:44,728 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:04:44,728 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.274.00/dorado_2004.274.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf