INFO 2025-06-26 06:03:05,589 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:03:05,589 process.py process_mission():434 [1] dorado_info[mission]["comment"] = SDP on 29 Sep 2004 Re-portaled 8/18/05 - ctdToUse = ctd1 INFO 2025-06-26 06:03:05,589 process.py process_mission():449 [1] Processing AUVCTD mission 2004.272.01 by user docker_user on host 671049448ece INFO 2025-06-26 06:03:05,589 process.py download_process():165 [1] Download and processing steps for 2004.272.01 INFO 2025-06-26 06:03:05,590 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004272/2004.272.01 INFO 2025-06-26 06:03:05,590 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004272/2004.272.01 to /data/auv_data/dorado/missionlogs/2004.272.01 INFO 2025-06-26 06:03:07,745 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.272.01 INFO 2025-06-26 06:03:07,745 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.272.01/ctdDriver.log (5107387 bytes) INFO 2025-06-26 06:03:08,125 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.272.01/ctdDriver2.log (5107733 bytes) INFO 2025-06-26 06:03:08,502 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.272.01/gps.log (39812 bytes) INFO 2025-06-26 06:03:08,515 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.272.01/hydroscatlog.log (3485174 bytes) INFO 2025-06-26 06:03:08,924 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2004.272.01/hydroscatlog.log: [20791 31184] INFO 2025-06-26 06:03:08,934 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.272.01/navigation.log (11316224 bytes) WARNING 2025-06-26 06:03:09,583 logs2netcdfs.py _read_data():216 [1] unpack requires a buffer of 8 bytes, b = b'\x00' at record 72531, for mDeltaT in file /data/auv_data/dorado/missionlogs/2004.272.01/navigation.log INFO 2025-06-26 06:03:09,583 logs2netcdfs.py _read_data():224 [1] bytes read = 11316231 file size = 11316224 INFO 2025-06-26 06:03:09,583 logs2netcdfs.py _read_data():229 [1] Tried to read 8 bytes, but only 7 bytes remaining INFO 2025-06-26 06:03:09,583 logs2netcdfs.py _read_data():235 [1] Successfully unpacked 72531 records WARNING 2025-06-26 06:03:09,676 logs2netcdfs.py _create_variable():536 [1] latitude: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (72532,) and arg 1 with shape (72531,). INFO 2025-06-26 06:03:09,676 logs2netcdfs.py _create_variable():537 [1] len(data) (72531) does not match shape of latitude.shape[0] (72532) WARNING 2025-06-26 06:03:09,676 logs2netcdfs.py _create_variable():544 [1] latitude data is short by one, appending the last value: 0.6418101005857658 WARNING 2025-06-26 06:03:09,685 logs2netcdfs.py _create_variable():536 [1] longitude: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (72532,) and arg 1 with shape (72531,). INFO 2025-06-26 06:03:09,685 logs2netcdfs.py _create_variable():537 [1] len(data) (72531) does not match shape of longitude.shape[0] (72532) WARNING 2025-06-26 06:03:09,686 logs2netcdfs.py _create_variable():544 [1] longitude data is short by one, appending the last value: -2.1281607938719342 INFO 2025-06-26 06:03:09,810 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.272.01/isuslog.log (490716 bytes) INFO 2025-06-26 06:03:09,861 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.272.01/parosci.log (3485750 bytes) INFO 2025-06-26 06:03:10,162 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.272.01/tailCone.log (3486667 bytes) INFO 2025-06-26 06:03:10,589 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.272.01/biolume.log (3955020 bytes) INFO 2025-06-26 06:03:10,965 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 06:03:11,178 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.43 seconds WARNING 2025-06-26 06:03:11,178 process.py download_process():196 [1] No lopc.bin file for 2004.272.01 INFO 2025-06-26 06:03:11,178 process.py calibrate():227 [1] Calibration steps for 2004.272.01 INFO 2025-06-26 06:03:11,334 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:03:11,336 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:03:12,822 calibrate.py _nudge_pos():1806 [1] 177: 0.070 0.0037878 -0.0007018 11407 38.03 14.790 -3.420 2004-09-28T18:49:05.132532864 INFO 2025-06-26 06:03:13,475 calibrate.py _nudge_pos():1806 [1] 247: 0.080 0.0023316 0.0013277 11475 38.25 9.052 6.432 2004-09-28T19:28:29.130587776 INFO 2025-06-26 06:03:14,119 calibrate.py _nudge_pos():1806 [1] 315: 0.080 0.0026230 0.0020557 11245 37.48 10.390 10.163 2004-09-28T20:07:05.131930880 INFO 2025-06-26 06:03:14,669 calibrate.py _nudge_pos():1806 [1] 373: 0.080 0.0019980 0.0017755 11471 38.25 7.755 8.602 2004-09-28T20:46:17.130807936 INFO 2025-06-26 06:03:14,719 calibrate.py _nudge_pos():1806 [1] 378: 0.080 0.0020983 0.0018528 35 0.11 2748.556 3029.604 2004-09-28T20:46:28.130054528 INFO 2025-06-26 06:03:15,153 calibrate.py _nudge_pos():1806 [1] 424: 0.100 0.0012759 0.0020077 11328 37.76 5.015 9.851 2004-09-28T21:24:59.131740032 INFO 2025-06-26 06:03:15,802 calibrate.py _nudge_pos():1806 [1] 492: 0.070 0.0003886 0.0020619 10290 34.30 1.682 11.140 2004-09-28T22:00:24.136167296 INFO 2025-06-26 06:03:16,272 calibrate.py _nudge_pos():1806 [1] 540: 0.080 -0.0001968 0.0004123 2670 8.90 -3.283 8.586 2004-09-28T22:10:05.136365952 INFO 2025-06-26 06:03:16,279 calibrate.py _nudge_pos():1862 [1] 520: - - - 56 0.18 - - INFO 2025-06-26 06:03:16,279 calibrate.py _nudge_pos():1868 [1] Points in final series = 72532 WARNING 2025-06-26 06:03:16,339 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:03:24,121 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:03:24,711 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:03:25,254 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:03:25,257 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.272.01/ctd1.nc INFO 2025-06-26 06:03:25,258 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:03:25,259 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:03:25,259 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:03:25,802 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 20 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:03:26,295 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 20 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:03:26,298 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.272.01/ctd2.nc INFO 2025-06-26 06:03:26,300 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 06:03:26,300 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:03:26,301 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 06:03:26,350 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 06:03:27,197 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 06:03:27,203 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 06:03:27,203 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.272.01 ERROR 2025-06-26 06:03:27,203 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.272.01 INFO 2025-06-26 06:03:27,264 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01_cal.nc INFO 2025-06-26 06:03:27,341 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:03:27,346 process.py align():251 [1] Alignment steps for 2004.272.01 INFO 2025-06-26 06:03:27,374 align.py process_cal():139 [1] Processing dorado_2004.272.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.272.01 INFO 2025-06-26 06:03:27,397 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:03:27,400 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:03:27,456 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:03:27,460 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:03:27,514 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:03:27,518 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:03:27,552 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:03:27,552 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:03:27,575 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:03:27,579 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:03:27,633 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:03:27,636 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:27,685 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:03:27,689 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:27,739 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:03:27,743 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:27,793 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:27,796 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:27,845 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:27,849 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:27,896 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:27,900 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:27,949 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:27,953 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,002 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,006 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,054 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,057 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,104 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,109 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,157 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,161 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,209 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,213 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,263 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,266 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,317 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,321 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,370 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,373 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,422 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,426 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,476 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,480 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,530 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,534 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,584 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,588 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,637 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:03:28,641 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:03:28,695 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.52 INFO 2025-06-26 06:03:28,735 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.52 INFO 2025-06-26 06:03:28,774 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.52 INFO 2025-06-26 06:03:28,817 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 06:03:28,858 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:03:28,898 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01_align.nc INFO 2025-06-26 06:03:28,969 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:03:28,971 process.py resample():273 [1] Resampling steps for 2004.272.01 INFO 2025-06-26 06:03:28,972 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:03:28,998 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01_align.nc mission netCDF file INFO 2025-06-26 06:03:29,005 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01_align.nc mission netCDF file INFO 2025-06-26 06:03:29,006 resample.py get_mission_start_end():1145 [1] navigation: 2004-09-28T18:08:28.349463936 to 2004-09-28T22:10:16.335598720 (0 days 00:00:00.329977472 before mission_end) INFO 2025-06-26 06:03:29,008 resample.py get_mission_start_end():1145 [1] hs2 : 2004-09-28T18:08:12.630540800 to 2004-09-28T22:10:16.595581056 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 06:03:29,010 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-09-28T18:08:28.329465344 to 2004-09-28T22:10:16.565582976 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 06:03:29,011 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-09-28T18:08:28.449457152 to 2004-09-28T22:10:16.595581056 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 06:03:29,013 resample.py get_mission_start_end():1145 [1] isus : 2004-09-28T13:58:23.000000000 to 2004-09-28T22:10:12.000000000 (0 days 00:00:04.665576192 before mission_end) INFO 2025-06-26 06:03:29,014 resample.py get_mission_start_end():1145 [1] biolume : 2004-09-28T18:08:07.600851072 to 2004-09-28T22:10:15.345632256 (0 days 00:00:01.319943936 before mission_end) INFO 2025-06-26 06:03:29,016 resample.py get_mission_start_end():1145 [1] tailcone : 2004-09-28T18:08:08.970791296 to 2004-09-28T22:10:16.665576192 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:03:29,016 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01_align.nc mission netCDF file INFO 2025-06-26 06:03:29,017 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,191 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,222 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,254 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,285 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,313 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,340 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,367 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,394 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,419 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,443 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,467 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,491 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,515 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,539 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,563 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,587 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,613 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,639 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,669 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,704 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,740 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,774 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,788 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,803 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,817 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,831 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:29,861 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:03:30,041 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01_1S.nc INFO 2025-06-26 06:03:31,103 create_products.py gulper_odv():401 [1] No gulper times found for 2004.272.01 INFO 2025-06-26 06:03:31,103 process.py archive():337 [1] Archiving steps for 2004.272.01 INFO 2025-06-26 06:03:31,103 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01, BASE_PATH = /data/auv_data INFO 2025-06-26 06:03:31,104 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:03:31,105 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.272.01_1S.nc INFO 2025-06-26 06:03:31,129 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:03:31,130 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.272.01_cal.nc INFO 2025-06-26 06:03:31,206 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:03:31,207 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.272.01_align.nc INFO 2025-06-26 06:03:31,282 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:03:31,307 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.01 done. INFO 2025-06-26 06:03:31,331 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.01 done. INFO 2025-06-26 06:03:31,337 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.01 done. INFO 2025-06-26 06:03:31,354 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.01 done. INFO 2025-06-26 06:03:31,393 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.01 done. INFO 2025-06-26 06:03:31,401 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.01 done. INFO 2025-06-26 06:03:31,418 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.01 done. INFO 2025-06-26 06:03:31,437 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.01 done. INFO 2025-06-26 06:03:31,489 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.01 done. INFO 2025-06-26 06:03:31,489 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:03:31,489 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.272.01/dorado_2004.272.01_processing.log /Volumes/AUVCTD/surveys/2004/netcdf