INFO 2025-06-26 06:02:03,837 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:02:03,837 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Must have missed this one, added 8 March 2005 w/ recacled isuslog Re-portaled 8/18/05 - ctdToUse = ctd1 INFO 2025-06-26 06:02:03,838 process.py process_mission():449 [1] Processing OCCO mission 2004.271.00 by user docker_user on host 671049448ece INFO 2025-06-26 06:02:03,838 process.py download_process():165 [1] Download and processing steps for 2004.271.00 INFO 2025-06-26 06:02:03,838 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004271/2004.271.00 INFO 2025-06-26 06:02:03,838 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004271/2004.271.00 to /data/auv_data/dorado/missionlogs/2004.271.00 INFO 2025-06-26 06:02:07,977 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.271.00 INFO 2025-06-26 06:02:07,977 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.271.00/ctdDriver.log (7482155 bytes) INFO 2025-06-26 06:02:08,552 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.271.00/ctdDriver2.log (7482325 bytes) INFO 2025-06-26 06:02:09,110 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.271.00/gps.log (83156 bytes) INFO 2025-06-26 06:02:09,128 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.271.00/hydroscatlog.log (5103314 bytes) INFO 2025-06-26 06:02:09,734 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.271.00/navigation.log (16578127 bytes) INFO 2025-06-26 06:02:11,070 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.271.00/isuslog.log (481468 bytes) INFO 2025-06-26 06:02:11,124 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.271.00/parosci.log (5105510 bytes) INFO 2025-06-26 06:02:11,578 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.271.00/tailCone.log (5105995 bytes) INFO 2025-06-26 06:02:12,240 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.271.00/biolume.log (5789932 bytes) INFO 2025-06-26 06:02:12,788 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 06:02:13,090 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.11 seconds WARNING 2025-06-26 06:02:13,090 process.py download_process():196 [1] No lopc.bin file for 2004.271.00 INFO 2025-06-26 06:02:13,090 process.py calibrate():227 [1] Calibration steps for 2004.271.00 INFO 2025-06-26 06:02:13,279 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:02:13,281 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:02:14,688 calibrate.py _nudge_pos():1806 [1] 167: 0.190 0.0000043 -0.0000124 14 0.04 14.805 -52.636 2004-09-27T15:59:16.996538624 INFO 2025-06-26 06:02:14,810 calibrate.py _nudge_pos():1806 [1] 179: 0.200 0.0006553 0.0009119 7665 25.55 3.799 6.614 2004-09-27T16:25:00.990768000 INFO 2025-06-26 06:02:15,528 calibrate.py _nudge_pos():1806 [1] 254: 0.190 -0.0000241 -0.0000069 20 0.06 -56.459 -20.148 2004-09-27T16:26:18.995424256 INFO 2025-06-26 06:02:15,741 calibrate.py _nudge_pos():1806 [1] 277: 0.190 0.0003733 0.0005020 4479 14.93 3.704 6.232 2004-09-27T16:41:36.992536960 INFO 2025-06-26 06:02:16,648 calibrate.py _nudge_pos():1806 [1] 364: 0.010 -0.0000591 0.0003029 7820 26.06 -0.336 2.154 2004-09-27T17:09:07.189490816 INFO 2025-06-26 06:02:17,402 calibrate.py _nudge_pos():1806 [1] 443: 0.200 -0.0000076 -0.0000006 84 0.28 -4.093 -0.417 2004-09-27T17:10:41.992996480 INFO 2025-06-26 06:02:17,421 calibrate.py _nudge_pos():1806 [1] 445: 0.010 -0.0000933 0.0002018 4951 16.50 -0.837 2.267 2004-09-27T17:27:13.195094400 INFO 2025-06-26 06:02:18,280 calibrate.py _nudge_pos():1806 [1] 533: 0.010 0.0009170 0.0013144 10154 33.85 4.014 7.196 2004-09-27T18:02:31.190001664 INFO 2025-06-26 06:02:19,222 calibrate.py _nudge_pos():1806 [1] 631: 0.010 0.0005363 0.0005249 5305 17.68 4.494 5.501 2004-09-27T18:21:49.190673408 INFO 2025-06-26 06:02:19,971 calibrate.py _nudge_pos():1806 [1] 709: 0.200 -0.0003091 0.0009903 13144 43.81 -1.045 4.189 2004-09-27T19:06:54.995312896 INFO 2025-06-26 06:02:20,786 calibrate.py _nudge_pos():1806 [1] 790: 0.010 0.0008702 0.0011626 10160 33.86 3.808 6.362 2004-09-27T19:42:07.190617856 INFO 2025-06-26 06:02:21,515 calibrate.py _nudge_pos():1806 [1] 865: 0.010 -0.0000237 0.0000044 25 0.08 -43.979 10.160 2004-09-27T19:43:26.195205504 INFO 2025-06-26 06:02:21,696 calibrate.py _nudge_pos():1806 [1] 884: 0.020 0.0003552 0.0004810 5335 17.78 2.961 5.013 2004-09-27T20:01:31.190878208 INFO 2025-06-26 06:02:22,470 calibrate.py _nudge_pos():1806 [1] 962: 0.010 -0.0008714 0.0014576 15275 50.91 -2.538 5.305 2004-09-27T20:53:43.196321280 INFO 2025-06-26 06:02:23,242 calibrate.py _nudge_pos():1806 [1] 1039: 0.010 0.0009464 0.0016819 15819 52.73 2.662 5.910 2004-09-27T21:47:43.194365952 INFO 2025-06-26 06:02:23,948 calibrate.py _nudge_pos():1806 [1] 1111: 0.010 0.0000263 -0.0000099 485 1.61 2.419 -1.138 2004-09-27T21:50:31.192857472 INFO 2025-06-26 06:02:24,259 calibrate.py _nudge_pos():1862 [1] 1121: - - - 3 0.01 - - INFO 2025-06-26 06:02:24,259 calibrate.py _nudge_pos():1868 [1] Points in final series = 105961 WARNING 2025-06-26 06:02:24,347 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:02:25,130 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:02:25,944 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:02:26,594 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:02:26,596 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.271.00/ctd1.nc INFO 2025-06-26 06:02:26,597 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:02:26,598 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:02:26,598 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:02:27,363 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:02:27,996 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:02:27,999 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.271.00/ctd2.nc INFO 2025-06-26 06:02:28,000 calibrate.py _range_qc_combined_nc():898 [1] Setting 2 ctd2_salinity values to NaN INFO 2025-06-26 06:02:28,000 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:02:28,000 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 06:02:28,034 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 06:02:29,253 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 06:02:29,259 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 06:02:29,259 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.271.00 ERROR 2025-06-26 06:02:29,259 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.271.00 INFO 2025-06-26 06:02:29,346 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_cal.nc INFO 2025-06-26 06:02:29,440 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:02:29,445 process.py align():251 [1] Alignment steps for 2004.271.00 INFO 2025-06-26 06:02:29,474 align.py process_cal():139 [1] Processing dorado_2004.271.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.271.00 INFO 2025-06-26 06:02:29,506 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:02:29,510 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:02:29,592 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:02:29,597 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:02:29,673 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:02:29,678 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:02:29,728 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:02:29,728 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:02:29,761 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:02:29,766 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:02:29,842 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:02:29,847 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:29,921 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:02:29,926 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:29,994 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:02:29,998 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,069 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,074 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,145 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,149 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,220 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,224 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,293 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,298 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,372 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,377 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,446 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,450 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,520 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,525 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,594 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,599 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,668 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,673 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,742 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,746 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,816 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,821 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,895 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,901 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:30,976 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:30,982 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:31,053 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:31,058 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:31,128 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:31,134 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:31,207 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:31,212 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:31,281 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:02:31,285 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:02:31,361 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.52 INFO 2025-06-26 06:02:31,411 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.52 INFO 2025-06-26 06:02:31,477 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.52 INFO 2025-06-26 06:02:31,529 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 06:02:31,582 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:02:31,642 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_align.nc INFO 2025-06-26 06:02:31,728 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:02:31,730 process.py resample():273 [1] Resampling steps for 2004.271.00 INFO 2025-06-26 06:02:31,731 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:02:31,759 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_align.nc mission netCDF file INFO 2025-06-26 06:02:31,765 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_align.nc mission netCDF file INFO 2025-06-26 06:02:31,766 resample.py get_mission_start_end():1145 [1] navigation: 2004-09-27T15:56:50.196595200 to 2004-09-27T21:51:02.790692864 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:02:31,768 resample.py get_mission_start_end():1145 [1] hs2 : 2004-09-27T15:56:33.007772672 to 2004-09-27T21:51:02.550709248 (0 days 00:00:00.239983616 before mission_end) INFO 2025-06-26 06:02:31,770 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-09-27T15:56:48.176733440 to 2004-09-27T21:51:02.700699136 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 06:02:31,771 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-09-27T15:56:47.946749440 to 2004-09-27T21:51:02.690699520 (0 days 00:00:00.099993344 before mission_end) INFO 2025-06-26 06:02:31,773 resample.py get_mission_start_end():1145 [1] isus : 2004-09-27T13:49:53.000000000 to 2004-09-27T21:50:58.000000000 (0 days 00:00:04.790692864 before mission_end) INFO 2025-06-26 06:02:31,775 resample.py get_mission_start_end():1145 [1] biolume : 2004-09-27T15:56:28.248064512 to 2004-09-27T21:51:01.430751744 (0 days 00:00:01.359941120 before mission_end) INFO 2025-06-26 06:02:31,777 resample.py get_mission_start_end():1145 [1] tailcone : 2004-09-27T15:56:28.378089856 to 2004-09-27T21:51:02.750695424 (0 days 00:00:00.039997440 before mission_end) INFO 2025-06-26 06:02:31,778 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_align.nc mission netCDF file INFO 2025-06-26 06:02:31,778 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,022 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,065 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,108 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,151 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,191 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,229 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,264 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,298 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,330 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,363 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,395 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,427 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,459 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,491 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,523 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,554 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,589 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,622 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,655 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,688 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,722 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,755 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,772 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,787 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,801 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,817 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:32,856 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:33,079 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_1S.nc INFO 2025-06-26 06:02:34,952 create_products.py gulper_odv():401 [1] No gulper times found for 2004.271.00 INFO 2025-06-26 06:02:34,952 process.py archive():337 [1] Archiving steps for 2004.271.00 INFO 2025-06-26 06:02:34,952 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00, BASE_PATH = /data/auv_data INFO 2025-06-26 06:02:34,954 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:02:34,955 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.271.00_1S.nc INFO 2025-06-26 06:02:34,978 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:02:34,979 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.271.00_cal.nc INFO 2025-06-26 06:02:35,078 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:02:35,079 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.271.00_align.nc INFO 2025-06-26 06:02:35,174 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:02:35,205 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-06-26 06:02:35,237 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-06-26 06:02:35,243 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-06-26 06:02:35,264 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-06-26 06:02:35,321 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-06-26 06:02:35,329 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-06-26 06:02:35,350 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-06-26 06:02:35,374 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-06-26 06:02:35,440 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-06-26 06:02:35,440 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:02:35,440 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf