INFO 2025-06-26 06:01:33,207 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:01:33,207 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Mistake made at initial portal run, should be OCCO, not LOCO Reportaled 3/9/05 with OCCO Re-portaled 8/18/05 - ctdToUse = ctd1 INFO 2025-06-26 06:01:33,207 process.py process_mission():449 [1] Processing OCCO mission 2004.261.00 by user docker_user on host 671049448ece INFO 2025-06-26 06:01:33,207 process.py download_process():165 [1] Download and processing steps for 2004.261.00 INFO 2025-06-26 06:01:33,207 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004261/2004.261.00 INFO 2025-06-26 06:01:33,207 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004261/2004.261.00 to /data/auv_data/dorado/missionlogs/2004.261.00 INFO 2025-06-26 06:01:35,941 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.261.00 INFO 2025-06-26 06:01:35,941 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.261.00/ctdDriver.log (7580099 bytes) INFO 2025-06-26 06:01:36,581 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.261.00/ctdDriver2.log (7580269 bytes) INFO 2025-06-26 06:01:37,220 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.261.00/gps.log (78044 bytes) INFO 2025-06-26 06:01:37,239 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.261.00/hydroscatlog.log (5169734 bytes) INFO 2025-06-26 06:01:37,919 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.261.00/navigation.log (16793095 bytes) INFO 2025-06-26 06:01:39,358 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.261.00/isuslog.log (421276 bytes) INFO 2025-06-26 06:01:39,406 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.261.00/parosci.log (5172278 bytes) INFO 2025-06-26 06:01:39,894 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.261.00/tailCone.log (5172235 bytes) INFO 2025-06-26 06:01:40,572 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.261.00/biolume.log (5865548 bytes) INFO 2025-06-26 06:01:41,161 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 06:01:41,488 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.55 seconds WARNING 2025-06-26 06:01:41,488 process.py download_process():196 [1] No lopc.bin file for 2004.261.00 INFO 2025-06-26 06:01:41,488 process.py calibrate():227 [1] Calibration steps for 2004.261.00 INFO 2025-06-26 06:01:41,695 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:01:41,697 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:01:43,276 calibrate.py _nudge_pos():1806 [1] 180: 0.170 0.0007707 0.0008883 7790 25.96 4.397 6.340 2004-09-17T16:09:37.195451264 INFO 2025-06-26 06:01:44,105 calibrate.py _nudge_pos():1806 [1] 266: 0.170 0.0004264 0.0005050 4524 15.08 4.188 6.205 2004-09-17T16:26:07.197631616 INFO 2025-06-26 06:01:44,897 calibrate.py _nudge_pos():1806 [1] 347: 0.170 -0.0000587 0.0004603 7850 26.16 -0.333 3.260 2004-09-17T16:53:37.194598912 INFO 2025-06-26 06:01:45,845 calibrate.py _nudge_pos():1806 [1] 441: 0.170 -0.0000424 0.0002796 4815 16.05 -0.392 3.229 2004-09-17T17:11:13.202257408 INFO 2025-06-26 06:01:46,566 calibrate.py _nudge_pos():1806 [1] 515: 0.170 0.0009944 0.0012376 10343 34.48 4.272 6.651 2004-09-17T17:46:55.195520896 INFO 2025-06-26 06:01:47,310 calibrate.py _nudge_pos():1806 [1] 592: 0.170 0.0000027 0.0000022 55 0.18 2.201 2.273 2004-09-17T17:48:22.199560704 INFO 2025-06-26 06:01:47,378 calibrate.py _nudge_pos():1806 [1] 599: 0.180 0.0005054 0.0005038 5385 17.95 4.173 5.201 2004-09-17T18:06:25.195370496 INFO 2025-06-26 06:01:48,209 calibrate.py _nudge_pos():1806 [1] 683: 0.180 -0.0004062 0.0011694 13295 44.31 -1.358 4.890 2004-09-17T18:52:07.197530240 INFO 2025-06-26 06:01:49,096 calibrate.py _nudge_pos():1806 [1] 773: 0.170 0.0008016 0.0012255 10114 33.71 3.524 6.736 2004-09-17T19:27:19.202848256 INFO 2025-06-26 06:01:50,113 calibrate.py _nudge_pos():1806 [1] 874: 0.180 0.0004568 0.0005568 6160 20.53 3.298 5.026 2004-09-17T19:49:31.201599872 INFO 2025-06-26 06:01:50,900 calibrate.py _nudge_pos():1806 [1] 954: 0.180 -0.0008798 0.0015539 15175 50.58 -2.579 5.693 2004-09-17T20:41:25.198276480 INFO 2025-06-26 06:01:51,694 calibrate.py _nudge_pos():1806 [1] 1034: 0.180 0.0010317 0.0019020 16941 56.48 2.709 6.240 2004-09-17T21:39:13.200702208 INFO 2025-06-26 06:01:52,076 calibrate.py _nudge_pos():1862 [1] 1051: - - - 4 0.01 - - INFO 2025-06-26 06:01:52,077 calibrate.py _nudge_pos():1868 [1] Points in final series = 107640 WARNING 2025-06-26 06:01:52,165 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:01:52,998 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:01:53,963 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:01:54,623 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:01:54,627 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.261.00/ctd1.nc INFO 2025-06-26 06:01:54,628 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:01:54,628 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:01:54,629 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:01:55,398 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:01:56,044 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:01:56,048 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.261.00/ctd2.nc INFO 2025-06-26 06:01:56,049 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 06:01:56,050 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:01:56,050 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 06:01:56,084 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 06:01:57,427 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 06:01:57,434 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 06:01:57,434 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.261.00 ERROR 2025-06-26 06:01:57,434 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.261.00 INFO 2025-06-26 06:01:57,525 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_cal.nc INFO 2025-06-26 06:01:57,646 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:01:57,655 process.py align():251 [1] Alignment steps for 2004.261.00 INFO 2025-06-26 06:01:57,690 align.py process_cal():139 [1] Processing dorado_2004.261.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.261.00 INFO 2025-06-26 06:01:57,727 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:01:57,732 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:01:57,834 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:01:57,841 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:01:57,930 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:01:57,936 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:01:57,996 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:01:57,996 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:01:58,032 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:01:58,039 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:01:58,123 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:01:58,129 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:58,207 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:01:58,212 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:58,288 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:01:58,294 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:58,375 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:58,381 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:58,460 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:58,466 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:58,548 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:58,554 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:58,632 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:58,638 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:58,720 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:58,726 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:58,805 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:58,811 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:58,892 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:58,899 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:58,979 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:58,985 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:59,062 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:59,068 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:59,144 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:59,148 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:59,229 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:59,234 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:59,314 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:59,320 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:59,400 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:59,406 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:59,484 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:59,489 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:59,574 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:59,579 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:59,648 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:59,653 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:59,722 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:01:59,726 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:01:59,802 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.46 INFO 2025-06-26 06:01:59,850 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.46 INFO 2025-06-26 06:01:59,898 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.46 INFO 2025-06-26 06:01:59,948 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 06:02:00,007 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:02:00,071 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_align.nc INFO 2025-06-26 06:02:00,162 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:02:00,166 process.py resample():273 [1] Resampling steps for 2004.261.00 INFO 2025-06-26 06:02:00,166 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:02:00,203 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_align.nc mission netCDF file INFO 2025-06-26 06:02:00,212 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_align.nc mission netCDF file INFO 2025-06-26 06:02:00,214 resample.py get_mission_start_end():1145 [1] navigation: 2004-09-17T15:41:01.602977536 to 2004-09-17T21:39:51.008112256 (0 days 00:00:00.119991680 before mission_end) INFO 2025-06-26 06:02:00,216 resample.py get_mission_start_end():1145 [1] hs2 : 2004-09-17T15:40:44.304162560 to 2004-09-17T21:39:51.098105856 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 06:02:00,219 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-09-17T15:40:59.183143168 to 2004-09-17T21:39:51.008112256 (0 days 00:00:00.119991680 before mission_end) INFO 2025-06-26 06:02:00,221 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-09-17T15:40:58.893163008 to 2004-09-17T21:39:51.128103936 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:02:00,223 resample.py get_mission_start_end():1145 [1] isus : 2004-09-17T13:43:59.000000000 to 2004-09-17T21:39:46.000000000 (0 days 00:00:05.128103936 before mission_end) INFO 2025-06-26 06:02:00,225 resample.py get_mission_start_end():1145 [1] biolume : 2004-09-17T15:40:39.344467840 to 2004-09-17T21:39:50.508112256 (0 days 00:00:00.619991680 before mission_end) INFO 2025-06-26 06:02:00,227 resample.py get_mission_start_end():1145 [1] tailcone : 2004-09-17T15:40:39.804470784 to 2004-09-17T21:39:51.088106624 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 06:02:00,228 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_align.nc mission netCDF file INFO 2025-06-26 06:02:00,229 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,480 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,523 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,566 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,607 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,644 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,681 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,717 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,752 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,785 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,817 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,848 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,882 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,914 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,946 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:00,979 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,013 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,048 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,083 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,117 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,150 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,185 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,222 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,244 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,259 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,272 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,289 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,328 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:02:01,550 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_1S.nc INFO 2025-06-26 06:02:03,270 create_products.py gulper_odv():401 [1] No gulper times found for 2004.261.00 INFO 2025-06-26 06:02:03,271 process.py archive():337 [1] Archiving steps for 2004.261.00 INFO 2025-06-26 06:02:03,271 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00, BASE_PATH = /data/auv_data INFO 2025-06-26 06:02:03,271 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:02:03,272 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.261.00_1S.nc INFO 2025-06-26 06:02:03,298 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:02:03,298 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.261.00_cal.nc INFO 2025-06-26 06:02:03,401 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:02:03,403 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.261.00_align.nc INFO 2025-06-26 06:02:03,513 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:02:03,547 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-06-26 06:02:03,582 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-06-26 06:02:03,588 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-06-26 06:02:03,612 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-06-26 06:02:03,668 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-06-26 06:02:03,676 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-06-26 06:02:03,699 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-06-26 06:02:03,726 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-06-26 06:02:03,796 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-06-26 06:02:03,797 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:02:03,797 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf