INFO 2025-11-06 15:27:13,122 logs2netcdfs.py download_process_logs():762 [12051] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004254/2004.254.00 INFO 2025-11-06 15:27:13,123 logs2netcdfs.py download_process_logs():791 [12051] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004254/2004.254.00 to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.254.00 INFO 2025-11-06 15:27:26,605 logs2netcdfs.py download_process_logs():802 [12051] Processing mission: dorado 2004.254.00 INFO 2025-11-06 15:27:26,606 logs2netcdfs.py download_process_logs():811 [12051] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.254.00/ctdDriver.log (9869947 bytes) INFO 2025-11-06 15:27:27,236 logs2netcdfs.py download_process_logs():811 [12051] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.254.00/ctdDriver2.log (9861317 bytes) INFO 2025-11-06 15:27:27,881 logs2netcdfs.py download_process_logs():811 [12051] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.254.00/gps.log (90572 bytes) INFO 2025-11-06 15:27:27,943 logs2netcdfs.py download_process_logs():811 [12051] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.254.00/hydroscatlog.log (6730214 bytes) INFO 2025-11-06 15:27:28,542 logs2netcdfs.py download_process_logs():811 [12051] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.254.00/navigation.log (21869023 bytes) INFO 2025-11-06 15:27:29,875 logs2netcdfs.py download_process_logs():811 [12051] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.254.00/isuslog.log (545692 bytes) INFO 2025-11-06 15:27:30,020 logs2netcdfs.py download_process_logs():811 [12051] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.254.00/parosci.log (6733622 bytes) INFO 2025-11-06 15:27:30,456 logs2netcdfs.py download_process_logs():811 [12051] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.254.00/tailCone.log (6733195 bytes) INFO 2025-11-06 15:27:31,108 logs2netcdfs.py download_process_logs():811 [12051] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.254.00/biolume.log (7635180 bytes) INFO 2025-11-06 15:27:31,705 logs2netcdfs.py write_variables():577 [12051] Expanding original timeTag to time60Hz variable for raw data INFO 2025-11-06 15:27:31,974 logs2netcdfs.py download_process_logs():830 [12051] Time to process: 5.37 seconds WARNING 2025-11-06 15:27:32,037 process.py download_process():249 [12051] No lopc.bin file for 2004.254.00 INFO 2025-11-06 15:27:32,255 AUV.py nudge_positions():80 [12051] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-11-06 15:27:32,260 AUV.py nudge_positions():114 [12051] - - - 0 0.00 - - - INFO 2025-11-06 15:27:33,999 AUV.py nudge_positions():203 [12051] 165: 0.080 0.0002669 0.0002133 3340 11.13 3.552 3.551 2004-09-10T02:59:12.789460224 INFO 2025-11-06 15:27:34,883 AUV.py nudge_positions():203 [12051] 253: 0.100 -0.0009402 0.0004509 10785 35.95 -3.875 2.325 2004-09-10T03:36:36.785735808 INFO 2025-11-06 15:27:35,410 AUV.py nudge_positions():203 [12051] 306: 0.100 -0.0011886 0.0005297 10360 34.53 -5.102 2.842 2004-09-10T04:12:00.790231424 INFO 2025-11-06 15:27:35,698 AUV.py nudge_positions():203 [12051] 330: 0.080 0.0000045 -0.0000055 20 0.06 10.641 -16.072 2004-09-10T04:12:27.788382080 INFO 2025-11-06 15:27:35,923 AUV.py nudge_positions():203 [12051] 356: 0.090 -0.0014705 0.0004181 10075 33.58 -6.493 2.307 2004-09-10T04:46:27.788632448 INFO 2025-11-06 15:27:36,429 AUV.py nudge_positions():203 [12051] 409: 0.100 -0.0022462 -0.0006551 10915 36.38 -9.159 -3.337 2004-09-10T05:23:42.785524608 INFO 2025-11-06 15:27:37,053 AUV.py nudge_positions():203 [12051] 466: 0.090 -0.0011428 -0.0004192 10960 36.53 -4.643 -2.126 2004-09-10T06:01:12.791388800 INFO 2025-11-06 15:27:37,546 AUV.py nudge_positions():203 [12051] 507: 0.100 -0.0024167 0.0005115 10480 34.93 -10.270 2.713 2004-09-10T06:36:48.785063296 INFO 2025-11-06 15:27:38,489 AUV.py nudge_positions():203 [12051] 576: 0.090 -0.0040186 0.0011739 5540 18.46 -32.314 11.781 2004-09-10T06:56:24.794501120 INFO 2025-11-06 15:27:39,117 AUV.py nudge_positions():203 [12051] 629: 0.110 0.0015596 0.0003920 12070 40.23 5.757 1.806 2004-09-10T07:37:30.785568896 INFO 2025-11-06 15:27:39,619 AUV.py nudge_positions():203 [12051] 672: 0.110 0.0011370 -0.0001114 10770 35.90 4.705 -0.575 2004-09-10T08:14:06.785132928 INFO 2025-11-06 15:27:40,238 AUV.py nudge_positions():203 [12051] 717: 0.100 0.0020669 0.0005451 10370 34.56 8.886 2.922 2004-09-10T08:49:24.790039552 INFO 2025-11-06 15:27:41,128 AUV.py nudge_positions():203 [12051] 765: 0.100 0.0007820 0.0006613 11220 37.40 3.108 3.277 2004-09-10T09:27:36.793026432 INFO 2025-11-06 15:27:41,974 AUV.py nudge_positions():203 [12051] 818: 0.120 0.0008273 0.0006659 10960 36.53 3.367 3.378 2004-09-10T10:05:00.789302400 INFO 2025-11-06 15:27:43,967 AUV.py nudge_positions():203 [12051] 942: 0.130 0.0010645 0.0008425 2595 8.65 18.307 18.056 2004-09-10T10:15:42.785322368 INFO 2025-11-06 15:27:44,910 AUV.py nudge_positions():203 [12051] 991: 0.110 0.0012243 0.0010805 3660 12.20 14.927 16.416 2004-09-10T10:28:42.791888512 INFO 2025-11-06 15:27:49,266 AUV.py nudge_positions():261 [12051] 1225: - - - 3 0.01 - - INFO 2025-11-06 15:27:49,266 AUV.py nudge_positions():267 [12051] Points in final series = 140178 WARNING 2025-11-06 15:27:50,524 AUV.py _create_nudge_plots():376 [12051] No map plot, could not import cartopy WARNING 2025-11-06 15:27:50,591 calibrate.py _depth_process():1925 [12051] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-11-06 15:27:51,176 calibrate.py _geometric_depth_correction():3155 [12051] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:51,749 calibrate.py _geometric_depth_correction():3155 [12051] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:52,212 calibrate.py _geometric_depth_correction():3155 [12051] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:52,214 calibrate.py _ctd_process():2651 [12051] Performing range checking of ['ctd1_salinity'] in 2004.254.00/ctd1.nc INFO 2025-11-06 15:27:52,215 calibrate.py _range_qc_combined_nc():890 [12051] Setting 0 ctd1_salinity values to NaN INFO 2025-11-06 15:27:52,216 calibrate.py _range_qc_combined_nc():902 [12051] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:52,216 calibrate.py _range_qc_combined_nc():928 [12051] Done range checking ctd1 INFO 2025-11-06 15:27:52,799 calibrate.py _geometric_depth_correction():3155 [12051] ctd2: d_beg_time_diff: 43 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:53,258 calibrate.py _geometric_depth_correction():3155 [12051] ctd2: d_beg_time_diff: 43 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:53,260 calibrate.py _ctd_process():2651 [12051] Performing range checking of ['ctd2_salinity'] in 2004.254.00/ctd2.nc INFO 2025-11-06 15:27:53,261 calibrate.py _range_qc_combined_nc():890 [12051] Setting 0 ctd2_salinity values to NaN INFO 2025-11-06 15:27:53,261 calibrate.py _range_qc_combined_nc():902 [12051] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:53,262 calibrate.py _range_qc_combined_nc():928 [12051] Done range checking ctd2 INFO 2025-11-06 15:27:53,286 calibrate.py _biolume_process():2860 [12051] Checking for non-monotonic increasing time60hz INFO 2025-11-06 15:27:53,960 calibrate.py _biolume_process():2863 [12051] Removing non-monotonic increasing time60hz at indices: [210360] INFO 2025-11-06 15:27:54,092 calibrate.py _geometric_depth_correction():3155 [12051] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-11-06 15:27:54,097 calibrate.py process_logs():3280 [12051] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-11-06 15:27:54,098 calibrate.py process_logs():3274 [12051] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.254.00 ERROR 2025-11-06 15:27:54,098 calibrate.py process_logs():3274 [12051] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.254.00 INFO 2025-11-06 15:27:54,160 calibrate.py write_netcdf():3240 [12051] Writing calibrated instrument data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00_cal.nc INFO 2025-11-06 15:27:54,214 calibrate.py write_netcdf():3244 [12051] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-11-06 15:27:54,242 align.py process_cal():144 [12051] Processing /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00_cal.nc INFO 2025-11-06 15:27:54,270 align.py process_cal():211 [12051] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:54,273 align.py process_cal():254 [12051] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:54,343 align.py process_cal():211 [12051] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:54,346 align.py process_cal():254 [12051] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:54,410 align.py process_cal():211 [12051] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:54,413 align.py process_cal():254 [12051] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:54,450 align.py process_cal():166 [12051] Skipping navigation_posx INFO 2025-11-06 15:27:54,450 align.py process_cal():166 [12051] Skipping navigation_posy INFO 2025-11-06 15:27:54,477 align.py process_cal():211 [12051] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:54,480 align.py process_cal():254 [12051] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:54,542 align.py process_cal():211 [12051] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:54,545 align.py process_cal():254 [12051] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:54,602 align.py process_cal():211 [12051] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:54,605 align.py process_cal():254 [12051] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:54,662 align.py process_cal():211 [12051] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:54,665 align.py process_cal():254 [12051] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:54,721 align.py process_cal():211 [12051] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:54,724 align.py process_cal():254 [12051] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:54,780 align.py process_cal():211 [12051] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:54,784 align.py process_cal():254 [12051] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:54,840 align.py process_cal():211 [12051] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:54,844 align.py process_cal():254 [12051] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:54,901 align.py process_cal():211 [12051] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:54,904 align.py process_cal():254 [12051] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:54,962 align.py process_cal():211 [12051] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:54,965 align.py process_cal():254 [12051] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,027 align.py process_cal():211 [12051] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,031 align.py process_cal():254 [12051] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,092 align.py process_cal():211 [12051] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,095 align.py process_cal():254 [12051] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,154 align.py process_cal():211 [12051] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,158 align.py process_cal():254 [12051] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,219 align.py process_cal():211 [12051] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,222 align.py process_cal():254 [12051] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,281 align.py process_cal():211 [12051] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,285 align.py process_cal():254 [12051] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,345 align.py process_cal():211 [12051] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,348 align.py process_cal():254 [12051] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,409 align.py process_cal():211 [12051] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,414 align.py process_cal():254 [12051] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,473 align.py process_cal():211 [12051] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,477 align.py process_cal():254 [12051] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,537 align.py process_cal():211 [12051] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,541 align.py process_cal():254 [12051] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,602 align.py process_cal():211 [12051] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,606 align.py process_cal():254 [12051] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,665 align.py process_cal():211 [12051] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,669 align.py process_cal():254 [12051] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,730 align.py process_cal():211 [12051] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.254.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:55,734 align.py process_cal():254 [12051] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:55,801 align.py process_cal():254 [12051] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:55,848 align.py process_cal():254 [12051] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:55,894 align.py process_cal():254 [12051] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:55,943 align.py process_cal():254 [12051] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-11-06 15:27:55,992 align.py process_cal():254 [12051] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:56,093 align.py write_netcdf():342 [12051] Writing aligned data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00_align.nc INFO 2025-11-06 15:27:56,152 align.py write_netcdf():347 [12051] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-11-06 15:27:56,153 resample.py resample_mission():1185 [12051] Using depth_threshold = 10.00 m INFO 2025-11-06 15:27:56,180 resample.py instruments_variables():235 [12051] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00_align.nc mission netCDF file INFO 2025-11-06 15:27:56,187 resample.py instruments_variables():235 [12051] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00_align.nc mission netCDF file INFO 2025-11-06 15:27:56,189 resample.py get_mission_start_end():1145 [12051] navigation: 2004-09-10T02:45:41.995003520 to 2004-09-10T10:32:57.394446848 (0 days 00:00:00 before mission_end) INFO 2025-11-06 15:27:56,192 resample.py get_mission_start_end():1145 [12051] hs2 : 2004-09-10T02:45:24.736185600 to 2004-09-10T10:32:57.374448256 (0 days 00:00:00.019998592 before mission_end) INFO 2025-11-06 15:27:56,194 resample.py get_mission_start_end():1145 [12051] ctd1 : 2004-09-10T02:45:40.015139072 to 2004-09-10T10:32:57.384447616 (0 days 00:00:00.009999232 before mission_end) INFO 2025-11-06 15:27:56,196 resample.py get_mission_start_end():1145 [12051] ctd2 : 2004-09-10T02:46:04.323473664 to 2004-09-10T10:32:57.394446848 (0 days 00:00:00 before mission_end) INFO 2025-11-06 15:27:56,197 resample.py get_mission_start_end():1145 [12051] isus : 2004-09-10T02:46:39.000000000 to 2004-09-10T10:32:52.000000000 (0 days 00:00:05.394446848 before mission_end) INFO 2025-11-06 15:27:56,198 resample.py get_mission_start_end():1145 [12051] biolume : 2004-09-10T02:45:19.616502016 to 2004-09-10T10:32:56.214493568 (0 days 00:00:01.179953280 before mission_end) INFO 2025-11-06 15:27:56,201 resample.py get_mission_start_end():1145 [12051] tailcone : 2004-09-10T02:45:20.336487040 to 2004-09-10T10:32:57.344450432 (0 days 00:00:00.049996416 before mission_end) INFO 2025-11-06 15:27:56,202 resample.py instruments_variables():235 [12051] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00_align.nc mission netCDF file INFO 2025-11-06 15:27:56,203 resample.py resample_coordinates():249 [12051] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,374 resample.py resample_variable():1031 [12051] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,405 resample.py resample_variable():1031 [12051] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,436 resample.py resample_variable():1031 [12051] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,466 resample.py resample_variable():1031 [12051] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,490 resample.py resample_variable():1031 [12051] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,515 resample.py resample_variable():1031 [12051] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,540 resample.py resample_variable():1031 [12051] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,564 resample.py resample_variable():1031 [12051] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,587 resample.py resample_variable():1031 [12051] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,610 resample.py resample_variable():1031 [12051] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,632 resample.py resample_variable():1031 [12051] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,654 resample.py resample_variable():1031 [12051] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,677 resample.py resample_variable():1031 [12051] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,700 resample.py resample_variable():1031 [12051] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,722 resample.py resample_variable():1031 [12051] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,746 resample.py resample_variable():1031 [12051] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,770 resample.py resample_variable():1031 [12051] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,794 resample.py resample_variable():1031 [12051] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,817 resample.py resample_variable():1031 [12051] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,840 resample.py resample_variable():1031 [12051] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,864 resample.py resample_variable():1031 [12051] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,886 resample.py resample_variable():1031 [12051] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,898 resample.py resample_variable():1031 [12051] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,906 resample.py resample_variable():1031 [12051] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,913 resample.py resample_variable():1031 [12051] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,923 resample.py resample_variable():1031 [12051] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:56,947 resample.py resample_variable():1031 [12051] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:57,133 resample.py resample_mission():1297 [12051] Saved resampled mission to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00_1S.nc INFO 2025-11-06 15:27:59,594 create_products.py gulper_odv():401 [12051] No gulper times found for 2004.254.00 INFO 2025-11-06 15:27:59,600 archive.py copy_to_AUVTCD():62 [12051] Archiving /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-11-06 15:27:59,671 archive.py copy_to_AUVTCD():80 [12051] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.254.00_1S.nc INFO 2025-11-06 15:27:59,832 archive.py copy_to_AUVTCD():84 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:59,835 archive.py copy_to_AUVTCD():80 [12051] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.254.00_cal.nc INFO 2025-11-06 15:28:00,306 archive.py copy_to_AUVTCD():84 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:28:00,308 archive.py copy_to_AUVTCD():80 [12051] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.254.00_align.nc INFO 2025-11-06 15:28:00,756 archive.py copy_to_AUVTCD():84 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:28:01,035 archive.py copy_to_AUVTCD():110 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004254/2004.254.00 done. INFO 2025-11-06 15:28:01,147 archive.py copy_to_AUVTCD():110 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004254/2004.254.00 done. INFO 2025-11-06 15:28:01,217 archive.py copy_to_AUVTCD():110 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004254/2004.254.00 done. INFO 2025-11-06 15:28:01,362 archive.py copy_to_AUVTCD():110 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004254/2004.254.00 done. INFO 2025-11-06 15:28:01,827 archive.py copy_to_AUVTCD():110 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004254/2004.254.00 done. INFO 2025-11-06 15:28:01,870 archive.py copy_to_AUVTCD():110 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004254/2004.254.00 done. INFO 2025-11-06 15:28:02,294 archive.py copy_to_AUVTCD():110 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004254/2004.254.00 done. INFO 2025-11-06 15:28:02,730 archive.py copy_to_AUVTCD():110 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004254/2004.254.00 done. INFO 2025-11-06 15:28:03,070 archive.py copy_to_AUVTCD():110 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004254/2004.254.00 done. INFO 2025-11-06 15:28:03,071 archive.py copy_to_AUVTCD():118 [12051] Archiving product files INFO 2025-11-06 15:28:03,071 archive.py copy_to_AUVTCD():163 [12051] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.254.00/dorado_2004.254.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf