INFO 2025-11-06 15:27:12,975 logs2netcdfs.py download_process_logs():762 [12054] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004252/2004.252.00 INFO 2025-11-06 15:27:12,976 logs2netcdfs.py download_process_logs():791 [12054] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004252/2004.252.00 to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.252.00 INFO 2025-11-06 15:27:24,944 logs2netcdfs.py download_process_logs():802 [12054] Processing mission: dorado 2004.252.00 INFO 2025-11-06 15:27:24,945 logs2netcdfs.py download_process_logs():811 [12054] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.252.00/ctdDriver.log (6365611 bytes) INFO 2025-11-06 15:27:25,244 logs2netcdfs.py download_process_logs():811 [12054] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.252.00/ctdDriver2.log (6365693 bytes) INFO 2025-11-06 15:27:25,540 logs2netcdfs.py download_process_logs():811 [12054] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.252.00/gps.log (78260 bytes) INFO 2025-11-06 15:27:25,565 logs2netcdfs.py download_process_logs():811 [12054] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.252.00/hydroscatlog.log (4342094 bytes) INFO 2025-11-06 15:27:25,914 logs2netcdfs.py download_process_logs():811 [12054] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.252.00/navigation.log (14103031 bytes) INFO 2025-11-06 15:27:26,656 logs2netcdfs.py download_process_logs():811 [12054] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.252.00/isuslog.log (514908 bytes) INFO 2025-11-06 15:27:26,742 logs2netcdfs.py download_process_logs():811 [12054] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.252.00/parosci.log (4344422 bytes) INFO 2025-11-06 15:27:27,016 logs2netcdfs.py download_process_logs():811 [12054] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.252.00/tailCone.log (4344571 bytes) INFO 2025-11-06 15:27:27,443 logs2netcdfs.py download_process_logs():811 [12054] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.252.00/biolume.log (4926876 bytes) INFO 2025-11-06 15:27:27,810 logs2netcdfs.py write_variables():577 [12054] Expanding original timeTag to time60Hz variable for raw data INFO 2025-11-06 15:27:27,977 logs2netcdfs.py download_process_logs():830 [12054] Time to process: 3.03 seconds WARNING 2025-11-06 15:27:27,987 process.py download_process():249 [12054] No lopc.bin file for 2004.252.00 INFO 2025-11-06 15:27:28,172 AUV.py nudge_positions():80 [12054] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-11-06 15:27:28,177 AUV.py nudge_positions():114 [12054] - - - 0 0.00 - - - INFO 2025-11-06 15:27:29,859 AUV.py nudge_positions():203 [12054] 183: 0.010 -0.0010935 0.0051408 11311 37.70 -4.307 25.268 2004-09-08T16:54:54.452131712 INFO 2025-11-06 15:27:30,530 AUV.py nudge_positions():203 [12054] 248: 0.010 -0.0001693 0.0052951 11405 38.01 -0.661 25.812 2004-09-08T17:34:00.451419776 INFO 2025-11-06 15:27:30,994 AUV.py nudge_positions():203 [12054] 297: 0.200 0.0000187 0.0000416 24 0.08 36.218 100.288 2004-09-08T17:34:53.257802496 INFO 2025-11-06 15:27:31,159 AUV.py nudge_positions():203 [12054] 311: 0.010 0.0000781 0.0052010 11370 37.90 0.306 25.431 2004-09-08T18:13:00.451118976 INFO 2025-11-06 15:27:31,735 AUV.py nudge_positions():203 [12054] 361: 0.200 0.0000113 -0.0000567 39 0.13 13.205 -82.915 2004-09-08T18:13:57.257227392 INFO 2025-11-06 15:27:31,776 AUV.py nudge_positions():203 [12054] 366: 0.010 0.0000254 0.0056717 11425 38.08 0.099 27.599 2004-09-08T18:52:06.450407040 INFO 2025-11-06 15:27:32,103 AUV.py nudge_positions():203 [12054] 394: 0.200 -0.0000695 0.0000349 94 0.31 -33.271 20.831 2004-09-08T18:52:52.257268864 INFO 2025-11-06 15:27:32,168 AUV.py nudge_positions():203 [12054] 399: 0.200 -0.0001803 0.0000718 64 0.21 -127.461 63.373 2004-09-08T18:53:09.256104448 INFO 2025-11-06 15:27:32,413 AUV.py nudge_positions():203 [12054] 421: 0.010 0.0005798 0.0044803 11420 38.06 2.261 21.811 2004-09-08T19:31:36.448050944 INFO 2025-11-06 15:27:32,851 AUV.py nudge_positions():203 [12054] 461: 0.010 0.0007925 0.0030524 11535 38.45 3.060 14.711 2004-09-08T20:10:42.457338368 INFO 2025-11-06 15:27:33,800 AUV.py nudge_positions():203 [12054] 532: 0.010 0.0012254 0.0013334 10900 36.33 5.006 6.801 2004-09-08T20:48:12.453202944 INFO 2025-11-06 15:27:34,449 AUV.py nudge_positions():203 [12054] 594: 0.010 0.0009802 0.0002345 5575 18.58 7.830 2.338 2004-09-08T21:07:48.452641536 INFO 2025-11-06 15:27:37,062 AUV.py nudge_positions():203 [12054] 875: 0.030 -0.0000134 -0.0000115 20 0.06 -31.391 -33.768 2004-09-08T21:12:32.453186304 INFO 2025-11-06 15:27:39,563 AUV.py nudge_positions():261 [12054] 1053: - - - 2 0.00 - - INFO 2025-11-06 15:27:39,563 AUV.py nudge_positions():267 [12054] Points in final series = 90243 WARNING 2025-11-06 15:27:40,044 AUV.py _create_nudge_plots():376 [12054] No map plot, could not import cartopy WARNING 2025-11-06 15:27:40,086 calibrate.py _depth_process():1925 [12054] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-11-06 15:27:40,465 calibrate.py _geometric_depth_correction():3155 [12054] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:40,850 calibrate.py _geometric_depth_correction():3155 [12054] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:41,197 calibrate.py _geometric_depth_correction():3155 [12054] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:41,199 calibrate.py _ctd_process():2651 [12054] Performing range checking of ['ctd1_salinity'] in 2004.252.00/ctd1.nc INFO 2025-11-06 15:27:41,201 calibrate.py _range_qc_combined_nc():890 [12054] Setting 0 ctd1_salinity values to NaN INFO 2025-11-06 15:27:41,201 calibrate.py _range_qc_combined_nc():902 [12054] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:41,201 calibrate.py _range_qc_combined_nc():928 [12054] Done range checking ctd1 INFO 2025-11-06 15:27:41,570 calibrate.py _geometric_depth_correction():3155 [12054] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:41,897 calibrate.py _geometric_depth_correction():3155 [12054] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:41,899 calibrate.py _ctd_process():2651 [12054] Performing range checking of ['ctd2_salinity'] in 2004.252.00/ctd2.nc INFO 2025-11-06 15:27:41,900 calibrate.py _range_qc_combined_nc():890 [12054] Setting 0 ctd2_salinity values to NaN INFO 2025-11-06 15:27:41,900 calibrate.py _range_qc_combined_nc():902 [12054] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:41,900 calibrate.py _range_qc_combined_nc():928 [12054] Done range checking ctd2 INFO 2025-11-06 15:27:41,920 calibrate.py _biolume_process():2860 [12054] Checking for non-monotonic increasing time60hz INFO 2025-11-06 15:27:42,484 calibrate.py _geometric_depth_correction():3155 [12054] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-11-06 15:27:42,489 calibrate.py process_logs():3280 [12054] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-11-06 15:27:42,490 calibrate.py process_logs():3274 [12054] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.252.00 ERROR 2025-11-06 15:27:42,490 calibrate.py process_logs():3274 [12054] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.252.00 INFO 2025-11-06 15:27:42,533 calibrate.py write_netcdf():3240 [12054] Writing calibrated instrument data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00_cal.nc INFO 2025-11-06 15:27:42,579 calibrate.py write_netcdf():3244 [12054] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-11-06 15:27:42,604 align.py process_cal():144 [12054] Processing /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00_cal.nc INFO 2025-11-06 15:27:42,624 align.py process_cal():211 [12054] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:42,626 align.py process_cal():254 [12054] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:42,677 align.py process_cal():211 [12054] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:42,679 align.py process_cal():254 [12054] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:42,728 align.py process_cal():211 [12054] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:42,731 align.py process_cal():254 [12054] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:42,757 align.py process_cal():166 [12054] Skipping navigation_posx INFO 2025-11-06 15:27:42,757 align.py process_cal():166 [12054] Skipping navigation_posy INFO 2025-11-06 15:27:42,775 align.py process_cal():211 [12054] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:42,778 align.py process_cal():254 [12054] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:42,824 align.py process_cal():211 [12054] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:42,829 align.py process_cal():254 [12054] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:42,874 align.py process_cal():211 [12054] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:42,876 align.py process_cal():254 [12054] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:42,920 align.py process_cal():211 [12054] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:42,922 align.py process_cal():254 [12054] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:42,963 align.py process_cal():211 [12054] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:42,965 align.py process_cal():254 [12054] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,007 align.py process_cal():211 [12054] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,010 align.py process_cal():254 [12054] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,058 align.py process_cal():211 [12054] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,061 align.py process_cal():254 [12054] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,113 align.py process_cal():211 [12054] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,115 align.py process_cal():254 [12054] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,157 align.py process_cal():211 [12054] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,160 align.py process_cal():254 [12054] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,201 align.py process_cal():211 [12054] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,204 align.py process_cal():254 [12054] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,247 align.py process_cal():211 [12054] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,250 align.py process_cal():254 [12054] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,293 align.py process_cal():211 [12054] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,296 align.py process_cal():254 [12054] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,339 align.py process_cal():211 [12054] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,342 align.py process_cal():254 [12054] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,384 align.py process_cal():211 [12054] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,387 align.py process_cal():254 [12054] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,431 align.py process_cal():211 [12054] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,433 align.py process_cal():254 [12054] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,477 align.py process_cal():211 [12054] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,480 align.py process_cal():254 [12054] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,525 align.py process_cal():211 [12054] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,531 align.py process_cal():254 [12054] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,580 align.py process_cal():211 [12054] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,583 align.py process_cal():254 [12054] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,631 align.py process_cal():211 [12054] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,633 align.py process_cal():254 [12054] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,673 align.py process_cal():211 [12054] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,676 align.py process_cal():254 [12054] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,728 align.py process_cal():211 [12054] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.252.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:43,731 align.py process_cal():254 [12054] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:43,775 align.py process_cal():254 [12054] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:43,817 align.py process_cal():254 [12054] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:43,848 align.py process_cal():254 [12054] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:43,886 align.py process_cal():254 [12054] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-11-06 15:27:43,922 align.py process_cal():254 [12054] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:44,027 align.py write_netcdf():342 [12054] Writing aligned data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00_align.nc INFO 2025-11-06 15:27:44,091 align.py write_netcdf():347 [12054] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-11-06 15:27:44,093 resample.py resample_mission():1185 [12054] Using depth_threshold = 10.00 m INFO 2025-11-06 15:27:44,126 resample.py instruments_variables():235 [12054] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00_align.nc mission netCDF file INFO 2025-11-06 15:27:44,135 resample.py instruments_variables():235 [12054] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00_align.nc mission netCDF file INFO 2025-11-06 15:27:44,138 resample.py get_mission_start_end():1145 [12054] navigation: 2004-09-08T16:14:32.858022400 to 2004-09-08T21:15:51.849526656 (0 days 00:00:00.099993216 before mission_end) INFO 2025-11-06 15:27:44,141 resample.py get_mission_start_end():1145 [12054] hs2 : 2004-09-08T16:14:15.059241728 to 2004-09-08T21:15:51.829528064 (0 days 00:00:00.119991808 before mission_end) INFO 2025-11-06 15:27:44,143 resample.py get_mission_start_end():1145 [12054] ctd1 : 2004-09-08T16:14:30.148207872 to 2004-09-08T21:15:51.839527424 (0 days 00:00:00.109992448 before mission_end) INFO 2025-11-06 15:27:44,144 resample.py get_mission_start_end():1145 [12054] ctd2 : 2004-09-08T16:14:30.128209408 to 2004-09-08T21:15:51.949519872 (0 days 00:00:00 before mission_end) INFO 2025-11-06 15:27:44,146 resample.py get_mission_start_end():1145 [12054] isus : 2004-09-08T13:53:53.000000000 to 2004-09-08T21:15:47.000000000 (0 days 00:00:04.949519872 before mission_end) INFO 2025-11-06 15:27:44,147 resample.py get_mission_start_end():1145 [12054] biolume : 2004-09-08T16:14:10.169542272 to 2004-09-08T21:15:50.619576704 (0 days 00:00:01.329943168 before mission_end) INFO 2025-11-06 15:27:44,149 resample.py get_mission_start_end():1145 [12054] tailcone : 2004-09-08T16:14:10.609546368 to 2004-09-08T21:15:51.939520384 (0 days 00:00:00.009999488 before mission_end) INFO 2025-11-06 15:27:44,150 resample.py instruments_variables():235 [12054] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00_align.nc mission netCDF file INFO 2025-11-06 15:27:44,151 resample.py resample_coordinates():249 [12054] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,303 resample.py resample_variable():1031 [12054] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,333 resample.py resample_variable():1031 [12054] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,361 resample.py resample_variable():1031 [12054] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,387 resample.py resample_variable():1031 [12054] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,412 resample.py resample_variable():1031 [12054] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,443 resample.py resample_variable():1031 [12054] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,468 resample.py resample_variable():1031 [12054] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,495 resample.py resample_variable():1031 [12054] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,517 resample.py resample_variable():1031 [12054] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,539 resample.py resample_variable():1031 [12054] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,565 resample.py resample_variable():1031 [12054] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,586 resample.py resample_variable():1031 [12054] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,608 resample.py resample_variable():1031 [12054] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,634 resample.py resample_variable():1031 [12054] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,651 resample.py resample_variable():1031 [12054] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,674 resample.py resample_variable():1031 [12054] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,702 resample.py resample_variable():1031 [12054] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,728 resample.py resample_variable():1031 [12054] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,754 resample.py resample_variable():1031 [12054] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,782 resample.py resample_variable():1031 [12054] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,807 resample.py resample_variable():1031 [12054] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,827 resample.py resample_variable():1031 [12054] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,838 resample.py resample_variable():1031 [12054] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,854 resample.py resample_variable():1031 [12054] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,861 resample.py resample_variable():1031 [12054] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,874 resample.py resample_variable():1031 [12054] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:44,905 resample.py resample_variable():1031 [12054] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:45,177 resample.py resample_mission():1297 [12054] Saved resampled mission to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00_1S.nc INFO 2025-11-06 15:27:47,378 create_products.py gulper_odv():401 [12054] No gulper times found for 2004.252.00 INFO 2025-11-06 15:27:47,379 archive.py copy_to_AUVTCD():62 [12054] Archiving /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-11-06 15:27:47,383 archive.py copy_to_AUVTCD():80 [12054] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.252.00_1S.nc INFO 2025-11-06 15:27:47,447 archive.py copy_to_AUVTCD():84 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:47,449 archive.py copy_to_AUVTCD():80 [12054] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.252.00_cal.nc INFO 2025-11-06 15:27:47,712 archive.py copy_to_AUVTCD():84 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:47,714 archive.py copy_to_AUVTCD():80 [12054] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.252.00_align.nc INFO 2025-11-06 15:27:47,982 archive.py copy_to_AUVTCD():84 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:48,060 archive.py copy_to_AUVTCD():110 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004252/2004.252.00 done. INFO 2025-11-06 15:27:48,135 archive.py copy_to_AUVTCD():110 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004252/2004.252.00 done. INFO 2025-11-06 15:27:48,154 archive.py copy_to_AUVTCD():110 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004252/2004.252.00 done. INFO 2025-11-06 15:27:48,212 archive.py copy_to_AUVTCD():110 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004252/2004.252.00 done. INFO 2025-11-06 15:27:48,359 archive.py copy_to_AUVTCD():110 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004252/2004.252.00 done. INFO 2025-11-06 15:27:48,382 archive.py copy_to_AUVTCD():110 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004252/2004.252.00 done. INFO 2025-11-06 15:27:48,443 archive.py copy_to_AUVTCD():110 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004252/2004.252.00 done. INFO 2025-11-06 15:27:48,510 archive.py copy_to_AUVTCD():110 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004252/2004.252.00 done. INFO 2025-11-06 15:27:48,722 archive.py copy_to_AUVTCD():110 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004252/2004.252.00 done. INFO 2025-11-06 15:27:48,723 archive.py copy_to_AUVTCD():118 [12054] Archiving product files INFO 2025-11-06 15:27:48,723 archive.py copy_to_AUVTCD():163 [12054] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.252.00/dorado_2004.252.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf