INFO 2025-06-26 05:56:29,572 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:56:29,572 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Added 20 December 2004 in response to Carole's email question Fails in plotting because of missing O2 (?) Re-portaled 8/18/05 Added 20 Dec 2004 in response to Carole's email question. Fails in plotting because of missing O2 (?) - ctdToUse = ctd1 INFO 2025-06-26 05:56:29,573 process.py process_mission():449 [1] Processing AUVCTD mission 2004.251.00 by user docker_user on host 671049448ece INFO 2025-06-26 05:56:29,573 process.py download_process():165 [1] Download and processing steps for 2004.251.00 INFO 2025-06-26 05:56:29,573 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004251/2004.251.00 INFO 2025-06-26 05:56:29,573 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004251/2004.251.00 to /data/auv_data/dorado/missionlogs/2004.251.00 INFO 2025-06-26 05:56:36,934 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.251.00 INFO 2025-06-26 05:56:36,934 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.251.00/ctdDriver.log (9571891 bytes) INFO 2025-06-26 05:56:37,628 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.251.00/ctdDriver2.log (9568893 bytes) INFO 2025-06-26 05:56:38,333 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.251.00/gps.log (1480748 bytes) INFO 2025-06-26 05:56:38,498 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.251.00/hydroscatlog.log (6527534 bytes) INFO 2025-06-26 05:56:39,280 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.251.00/navigation.log (21209299 bytes) INFO 2025-06-26 05:56:40,964 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.251.00/isuslog.log (618236 bytes) INFO 2025-06-26 05:56:41,033 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.251.00/parosci.log (6530678 bytes) INFO 2025-06-26 05:56:41,615 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.251.00/tailCone.log (6531019 bytes) INFO 2025-06-26 05:56:42,448 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.251.00/biolume.log (7405068 bytes) INFO 2025-06-26 05:56:43,174 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:56:43,588 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.65 seconds WARNING 2025-06-26 05:56:43,589 process.py download_process():196 [1] No lopc.bin file for 2004.251.00 INFO 2025-06-26 05:56:43,589 process.py calibrate():227 [1] Calibration steps for 2004.251.00 INFO 2025-06-26 05:56:43,831 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:56:43,833 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:56:45,159 calibrate.py _nudge_pos():1806 [1] 152: 0.080 -0.0000256 0.0000499 35 0.11 -33.532 81.621 2004-09-07T15:37:01.977287808 INFO 2025-06-26 05:56:45,377 calibrate.py _nudge_pos():1806 [1] 174: 0.090 0.0003319 0.0051642 11475 38.25 1.289 25.020 2004-09-07T16:15:37.978630784 INFO 2025-06-26 05:56:46,131 calibrate.py _nudge_pos():1806 [1] 245: 0.080 0.0008402 0.0024152 5875 19.58 6.372 22.857 2004-09-07T16:36:22.983342208 INFO 2025-06-26 05:56:46,185 calibrate.py _nudge_pos():1806 [1] 250: 0.080 -0.0000165 0.0000276 50 0.16 -14.983 31.317 2004-09-07T16:36:36.982382976 INFO 2025-06-26 05:56:46,196 calibrate.py _nudge_pos():1806 [1] 251: 0.080 0.0001501 0.0000784 140 0.46 48.116 31.372 2004-09-07T16:37:04.980465152 INFO 2025-06-26 05:56:46,502 calibrate.py _nudge_pos():1806 [1] 281: 0.090 0.0000065 -0.0000292 40 0.13 7.465 -41.680 2004-09-07T16:37:41.977930496 INFO 2025-06-26 05:56:46,532 calibrate.py _nudge_pos():1806 [1] 284: 0.080 0.0000829 0.0000595 60 0.20 62.588 56.108 2004-09-07T16:37:55.976971648 INFO 2025-06-26 05:56:46,542 calibrate.py _nudge_pos():1806 [1] 285: 0.080 0.0001188 -0.0000272 20 0.06 278.468 -79.562 2004-09-07T16:37:59.976697728 INFO 2025-06-26 05:56:46,582 calibrate.py _nudge_pos():1806 [1] 289: 0.080 0.0001673 0.0001636 250 0.83 29.929 36.528 2004-09-07T16:38:52.983066368 INFO 2025-06-26 05:56:46,623 calibrate.py _nudge_pos():1806 [1] 293: 0.080 0.0000672 0.0000165 130 0.43 23.213 7.097 2004-09-07T16:39:21.981079808 INFO 2025-06-26 05:56:46,663 calibrate.py _nudge_pos():1806 [1] 297: 0.090 0.0001096 0.0000129 180 0.60 27.290 3.996 2004-09-07T16:40:01.978339968 INFO 2025-06-26 05:56:46,723 calibrate.py _nudge_pos():1806 [1] 303: 0.080 0.0001696 0.0000627 255 0.85 29.735 13.725 2004-09-07T16:40:57.984503296 INFO 2025-06-26 05:56:46,762 calibrate.py _nudge_pos():1806 [1] 307: 0.080 0.0000889 0.0000232 170 0.56 23.425 7.645 2004-09-07T16:41:34.981968640 INFO 2025-06-26 05:56:46,879 calibrate.py _nudge_pos():1806 [1] 319: 0.080 0.0001385 -0.0000548 270 0.90 22.930 -11.334 2004-09-07T16:42:39.977516160 INFO 2025-06-26 05:56:46,900 calibrate.py _nudge_pos():1806 [1] 321: 0.080 0.0000697 0.0002995 450 1.50 6.917 37.078 2004-09-07T16:44:10.981282048 INFO 2025-06-26 05:56:47,527 calibrate.py _nudge_pos():1806 [1] 385: 0.070 0.0002258 -0.0000694 135 0.45 75.050 -28.774 2004-09-07T16:45:40.985116544 INFO 2025-06-26 05:56:47,547 calibrate.py _nudge_pos():1806 [1] 387: 0.070 0.0008005 -0.0002520 745 2.48 47.932 -18.825 2004-09-07T16:48:10.984840576 INFO 2025-06-26 05:56:47,599 calibrate.py _nudge_pos():1806 [1] 392: 0.080 0.0008883 -0.0003251 95 0.31 421.011 -192.287 2004-09-07T16:48:34.983196672 INFO 2025-06-26 05:56:47,652 calibrate.py _nudge_pos():1806 [1] 397: 0.080 0.0009166 -0.0002976 75 0.25 551.852 -223.577 2004-09-07T16:48:53.981895168 INFO 2025-06-26 05:56:47,794 calibrate.py _nudge_pos():1806 [1] 411: 0.080 0.0004213 0.0002897 530 1.76 35.475 30.445 2004-09-07T16:50:52.983742976 INFO 2025-06-26 05:56:47,930 calibrate.py _nudge_pos():1806 [1] 425: 0.080 0.0003858 0.0001719 20 0.06 904.641 502.961 2004-09-07T16:51:09.982578560 INFO 2025-06-26 05:56:47,960 calibrate.py _nudge_pos():1806 [1] 428: 0.090 0.0005227 0.0002189 205 0.68 114.139 59.645 2004-09-07T16:51:52.979633152 INFO 2025-06-26 05:56:48,021 calibrate.py _nudge_pos():1806 [1] 434: 0.070 -0.0000387 0.0001636 365 1.21 -4.739 24.982 2004-09-07T16:53:10.984289408 INFO 2025-06-26 05:56:48,401 calibrate.py _nudge_pos():1806 [1] 472: 0.080 -0.0000648 0.0000738 30 0.10 -99.544 141.423 2004-09-07T16:53:53.981343744 INFO 2025-06-26 05:56:48,571 calibrate.py _nudge_pos():1806 [1] 489: 0.090 0.0000774 0.0002997 115 0.38 30.237 146.163 2004-09-07T16:54:32.978672256 INFO 2025-06-26 05:56:48,609 calibrate.py _nudge_pos():1806 [1] 493: 0.070 0.0002146 -0.0000096 155 0.51 62.052 -3.472 2004-09-07T16:55:06.986342656 INFO 2025-06-26 05:56:48,686 calibrate.py _nudge_pos():1806 [1] 501: 0.070 0.0003186 -0.0000236 85 0.28 168.949 -15.632 2004-09-07T16:55:30.984698496 INFO 2025-06-26 05:56:48,696 calibrate.py _nudge_pos():1806 [1] 502: 0.080 0.0004624 -0.0000435 40 0.13 528.259 -61.983 2004-09-07T16:55:38.984150656 INFO 2025-06-26 05:56:48,706 calibrate.py _nudge_pos():1806 [1] 503: 0.080 0.0004682 -0.0001164 20 0.06 1097.874 -340.499 2004-09-07T16:55:42.983876736 INFO 2025-06-26 05:56:48,717 calibrate.py _nudge_pos():1806 [1] 504: 0.080 0.0006844 -0.0001275 710 2.36 43.003 -9.997 2004-09-07T16:58:04.984148992 INFO 2025-06-26 05:56:48,803 calibrate.py _nudge_pos():1806 [1] 513: 0.080 0.0002523 0.0003138 1280 4.26 8.789 13.639 2004-09-07T17:02:28.986063488 INFO 2025-06-26 05:56:49,474 calibrate.py _nudge_pos():1806 [1] 580: 0.090 0.0001707 0.0000184 215 0.71 35.525 4.781 2004-09-07T17:04:19.978460032 INFO 2025-06-26 05:56:49,495 calibrate.py _nudge_pos():1806 [1] 582: 0.090 0.0001078 0.0001379 15 0.05 343.042 547.620 2004-09-07T17:04:23.978186112 INFO 2025-06-26 05:56:49,506 calibrate.py _nudge_pos():1806 [1] 583: 0.090 0.0003434 0.0001348 85 0.28 182.125 89.229 2004-09-07T17:04:40.977021696 INFO 2025-06-26 05:56:49,558 calibrate.py _nudge_pos():1806 [1] 588: 0.080 0.0001491 0.0000624 25 0.08 276.141 144.328 2004-09-07T17:04:49.986404480 INFO 2025-06-26 05:56:49,569 calibrate.py _nudge_pos():1806 [1] 589: 0.080 0.0003707 0.0000239 20 0.06 869.104 70.053 2004-09-07T17:04:53.986130432 INFO 2025-06-26 05:56:49,589 calibrate.py _nudge_pos():1806 [1] 591: 0.090 0.0004270 0.0000345 350 1.16 54.509 5.494 2004-09-07T17:06:04.981266944 INFO 2025-06-26 05:56:49,600 calibrate.py _nudge_pos():1806 [1] 592: 0.090 0.0003649 0.0000204 15 0.05 1161.265 81.035 2004-09-07T17:06:07.981061504 INFO 2025-06-26 05:56:49,610 calibrate.py _nudge_pos():1806 [1] 593: 0.080 0.0003993 0.0000235 15 0.05 1270.751 93.508 2004-09-07T17:06:10.980855936 INFO 2025-06-26 05:56:49,666 calibrate.py _nudge_pos():1806 [1] 597: 0.080 0.0004387 0.0000362 110 0.36 179.319 18.451 2004-09-07T17:06:35.979143424 INFO 2025-06-26 05:56:49,688 calibrate.py _nudge_pos():1806 [1] 599: 0.090 0.0005625 0.0000183 15 0.05 1789.989 72.712 2004-09-07T17:06:39.978869376 INFO 2025-06-26 05:56:49,710 calibrate.py _nudge_pos():1806 [1] 601: 0.080 0.0010304 -0.0000759 1080 3.60 42.540 -3.910 2004-09-07T17:10:16.984003584 INFO 2025-06-26 05:56:49,730 calibrate.py _nudge_pos():1806 [1] 603: 0.090 0.0010847 0.0001147 415 1.38 116.722 15.401 2004-09-07T17:11:40.978249600 INFO 2025-06-26 05:56:50,455 calibrate.py _nudge_pos():1806 [1] 674: 0.080 0.0000295 -0.0000079 40 0.13 33.723 -11.200 2004-09-07T17:12:58.982905856 INFO 2025-06-26 05:56:50,498 calibrate.py _nudge_pos():1806 [1] 678: 0.080 0.0001344 0.0000184 95 0.31 63.701 10.874 2004-09-07T17:13:20.981398784 INFO 2025-06-26 05:56:50,519 calibrate.py _nudge_pos():1806 [1] 680: 0.080 0.0006826 -0.0001959 115 0.38 266.736 -95.522 2004-09-07T17:13:44.979754880 INFO 2025-06-26 05:56:50,529 calibrate.py _nudge_pos():1806 [1] 681: 0.080 0.0001144 -0.0000357 20 0.06 268.125 -104.442 2004-09-07T17:13:48.979480704 INFO 2025-06-26 05:56:50,578 calibrate.py _nudge_pos():1806 [1] 686: 0.080 0.0002610 0.0000662 415 1.38 28.080 8.888 2004-09-07T17:15:16.983452032 INFO 2025-06-26 05:56:50,640 calibrate.py _nudge_pos():1806 [1] 692: 0.090 -0.0000433 0.0000171 115 0.38 -16.920 8.354 2004-09-07T17:15:44.981534208 INFO 2025-06-26 05:56:50,661 calibrate.py _nudge_pos():1806 [1] 694: 0.080 -0.0000579 0.0000756 30 0.10 -88.975 144.883 2004-09-07T17:15:51.981054592 INFO 2025-06-26 05:56:50,672 calibrate.py _nudge_pos():1806 [1] 695: 0.080 0.0003563 0.0006387 1475 4.91 10.766 24.087 2004-09-07T17:20:46.980845696 INFO 2025-06-26 05:56:51,371 calibrate.py _nudge_pos():1806 [1] 767: 0.080 0.0000602 0.0000722 15 0.05 191.692 286.755 2004-09-07T17:22:00.985776128 INFO 2025-06-26 05:56:51,390 calibrate.py _nudge_pos():1806 [1] 769: 0.090 0.0001468 0.0002130 555 1.85 11.803 21.371 2004-09-07T17:23:52.978104064 INFO 2025-06-26 05:56:51,534 calibrate.py _nudge_pos():1806 [1] 784: 0.080 0.0004503 -0.0000509 750 2.50 26.782 -3.776 2004-09-07T17:26:36.976869376 INFO 2025-06-26 05:56:51,554 calibrate.py _nudge_pos():1806 [1] 786: 0.070 0.0005463 -0.0000380 115 0.38 213.388 -18.501 2004-09-07T17:27:00.985224704 INFO 2025-06-26 05:56:51,583 calibrate.py _nudge_pos():1806 [1] 789: 0.080 0.0004631 0.0000784 30 0.10 711.367 150.359 2004-09-07T17:27:08.984676864 INFO 2025-06-26 05:56:51,594 calibrate.py _nudge_pos():1806 [1] 790: 0.090 0.0008348 -0.0000032 370 1.23 100.778 -0.487 2004-09-07T17:28:22.979607808 INFO 2025-06-26 05:56:51,644 calibrate.py _nudge_pos():1806 [1] 795: 0.090 0.0007736 0.0001328 20 0.06 1813.846 388.507 2004-09-07T17:28:30.979059712 INFO 2025-06-26 05:56:51,742 calibrate.py _nudge_pos():1806 [1] 805: 0.080 -0.0000080 0.0001431 300 1.00 -1.193 26.601 2004-09-07T17:29:39.984332544 INFO 2025-06-26 05:56:52,101 calibrate.py _nudge_pos():1806 [1] 841: 0.080 0.0000433 0.0000226 20 0.06 101.537 66.215 2004-09-07T17:30:18.981661056 INFO 2025-06-26 05:56:52,421 calibrate.py _nudge_pos():1806 [1] 874: 0.080 -0.0002492 -0.0003938 115 0.38 -97.367 -192.042 2004-09-07T17:31:13.977893632 INFO 2025-06-26 05:56:52,431 calibrate.py _nudge_pos():1806 [1] 875: 0.080 -0.0002163 -0.0004322 15 0.05 -688.370 -1716.171 2004-09-07T17:31:16.977688064 INFO 2025-06-26 05:56:52,442 calibrate.py _nudge_pos():1806 [1] 876: 0.090 0.0004178 -0.0000126 540 1.80 34.524 -1.304 2004-09-07T17:33:04.980289408 INFO 2025-06-26 05:56:52,513 calibrate.py _nudge_pos():1806 [1] 883: 0.080 0.0003524 -0.0000465 520 1.73 30.248 -4.983 2004-09-07T17:34:54.982753792 INFO 2025-06-26 05:56:52,534 calibrate.py _nudge_pos():1806 [1] 885: 0.080 0.0007400 -0.0000212 765 2.55 43.147 -1.544 2004-09-07T17:37:28.982203904 INFO 2025-06-26 05:57:41,076 calibrate.py _nudge_pos():1806 [1] 5843: 0.110 -0.0000061 0.0000363 85 0.28 -3.231 24.038 2004-09-07T19:00:22.981461760 INFO 2025-06-26 05:57:41,255 calibrate.py _nudge_pos():1806 [1] 5861: 0.090 -0.0000033 0.0000314 65 0.21 -2.274 27.254 2004-09-07T19:00:52.979406592 INFO 2025-06-26 05:57:43,877 calibrate.py _nudge_pos():1806 [1] 6127: 0.100 0.0000092 0.0000038 15 0.05 29.243 15.131 2004-09-07T19:05:22.980910336 INFO 2025-06-26 05:57:44,236 calibrate.py _nudge_pos():1806 [1] 6164: 0.110 -0.0000109 0.0000307 80 0.26 -6.147 21.622 2004-09-07T19:06:14.977348352 INFO 2025-06-26 05:57:52,814 calibrate.py _nudge_pos():1806 [1] 7040: 0.110 -0.0000155 0.0000100 20 0.06 -36.323 29.218 2004-09-07T19:20:53.977132800 INFO 2025-06-26 05:58:01,955 calibrate.py _nudge_pos():1806 [1] 7961: 0.110 0.0000150 0.0000079 15 0.05 47.865 31.458 2004-09-07T19:36:17.983833984 INFO 2025-06-26 05:58:05,454 calibrate.py _nudge_pos():1806 [1] 8311: 0.100 0.0000024 0.0000158 85 0.28 1.292 10.480 2004-09-07T19:42:24.978692992 INFO 2025-06-26 05:58:07,364 calibrate.py _nudge_pos():1806 [1] 8500: 0.100 0.0000107 -0.0000191 30 0.10 16.412 -36.702 2004-09-07T19:45:38.985402624 INFO 2025-06-26 05:58:15,970 calibrate.py _nudge_pos():1806 [1] 9371: 0.090 0.0000455 -0.0000150 35 0.11 59.577 -24.534 2004-09-07T20:00:15.985324160 INFO 2025-06-26 05:58:26,426 calibrate.py _nudge_pos():1806 [1] 10427: 0.110 0.0000109 0.0000387 60 0.20 8.227 36.442 2004-09-07T20:18:02.982229760 INFO 2025-06-26 05:58:38,734 calibrate.py _nudge_pos():1806 [1] 11616: 0.120 0.0000582 -0.0000232 30 0.10 89.352 -44.540 2004-09-07T20:37:57.980366720 INFO 2025-06-26 05:58:40,281 calibrate.py _nudge_pos():1806 [1] 11763: 0.110 0.0000373 -0.0000611 40 0.13 42.650 -87.124 2004-09-07T20:40:31.979817216 INFO 2025-06-26 05:58:46,726 calibrate.py _nudge_pos():1806 [1] 12391: 0.100 0.0000351 0.0000081 20 0.06 82.081 23.535 2004-09-07T20:51:02.986590208 INFO 2025-06-26 05:58:47,635 calibrate.py _nudge_pos():1806 [1] 12481: 0.110 0.0000570 0.0000039 25 0.08 105.753 9.136 2004-09-07T20:52:36.980151168 INFO 2025-06-26 05:58:49,050 calibrate.py _nudge_pos():1806 [1] 12616: 0.120 0.0000749 0.0002044 30 0.10 115.057 391.902 2004-09-07T20:54:56.980560512 INFO 2025-06-26 05:58:57,052 calibrate.py _nudge_pos():1806 [1] 13407: 0.110 0.0000488 0.0000059 25 0.08 90.539 13.564 2004-09-07T21:08:12.986030336 INFO 2025-06-26 05:58:57,369 calibrate.py _nudge_pos():1806 [1] 13438: 0.110 0.0000331 -0.0000199 15 0.05 105.349 -78.887 2004-09-07T21:08:45.983769856 INFO 2025-06-26 05:58:57,674 calibrate.py _nudge_pos():1806 [1] 13467: 0.110 0.0000729 -0.0000590 65 0.21 50.747 -51.213 2004-09-07T21:09:26.980961280 INFO 2025-06-26 05:59:08,952 calibrate.py _nudge_pos():1806 [1] 14565: 0.110 0.0001612 -0.0000915 35 0.11 211.195 -149.580 2004-09-07T21:27:50.985331968 INFO 2025-06-26 05:59:16,076 calibrate.py _nudge_pos():1806 [1] 15272: 0.100 0.0000454 -0.0000854 35 0.11 59.408 -139.511 2004-09-07T21:39:43.986488064 INFO 2025-06-26 05:59:58,003 calibrate.py _nudge_pos():1806 [1] 19371: 0.120 0.0000697 0.0000055 55 0.18 57.524 5.696 2004-09-07T22:48:12.985002240 INFO 2025-06-26 06:00:11,014 calibrate.py _nudge_pos():1862 [1] 20532: - - - 4 0.01 - - INFO 2025-06-26 06:00:11,014 calibrate.py _nudge_pos():1868 [1] Points in final series = 135948 WARNING 2025-06-26 06:00:11,141 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:00:11,361 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 2 of 108777 INFO 2025-06-26 06:00:12,207 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:00:13,199 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:00:14,011 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 06:00:14,014 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.251.00/ctd1.nc INFO 2025-06-26 06:00:14,015 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 06:00:14,015 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:00:14,015 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:00:14,957 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:00:15,773 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:00:15,777 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.251.00/ctd2.nc INFO 2025-06-26 06:00:15,778 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 06:00:15,779 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:00:15,779 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 06:00:15,821 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 06:00:17,177 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 186540 186541 186542 186543 186544 186545 186546 186547 186548 186549 186550 186551 186552 186553 186554 186555 186556 186557 186558 186559 186560 186561 186562 186563 186564 186565 186566 186567 186568 186569 316380 1632120 1632121 1632122 1632123 1632124 1632125 1632126] INFO 2025-06-26 06:00:17,448 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 06:00:17,454 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 06:00:17,456 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.251.00 ERROR 2025-06-26 06:00:17,456 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.251.00 INFO 2025-06-26 06:00:17,566 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00_cal.nc INFO 2025-06-26 06:00:17,673 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:00:17,677 process.py align():251 [1] Alignment steps for 2004.251.00 INFO 2025-06-26 06:00:17,709 align.py process_cal():139 [1] Processing dorado_2004.251.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.251.00 INFO 2025-06-26 06:00:17,749 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:00:17,754 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:00:17,851 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:00:17,857 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:00:17,953 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:00:17,959 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:00:18,016 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:00:18,016 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:00:18,055 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:00:18,061 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:00:18,153 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:00:18,158 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:18,240 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:00:18,245 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:18,328 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:00:18,333 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:18,415 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:18,421 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:18,522 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:18,529 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:18,615 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:18,620 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:18,706 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:18,711 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:18,793 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:18,798 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:18,883 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:18,888 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:18,970 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:18,976 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:19,059 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:19,065 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:19,149 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:19,156 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:19,246 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:19,251 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:19,335 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:19,340 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:19,425 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:19,431 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:19,513 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:19,519 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:19,605 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:19,610 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:19,694 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:19,699 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:19,784 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:19,790 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:19,874 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.251.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:00:19,879 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:00:19,969 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.24 INFO 2025-06-26 06:00:20,027 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.24 INFO 2025-06-26 06:00:20,089 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.24 INFO 2025-06-26 06:00:20,154 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 06:00:20,216 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:00:20,281 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00_align.nc INFO 2025-06-26 06:00:20,375 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:00:20,378 process.py resample():273 [1] Resampling steps for 2004.251.00 INFO 2025-06-26 06:00:20,378 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:00:20,406 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00_align.nc mission netCDF file INFO 2025-06-26 06:00:20,413 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00_align.nc mission netCDF file INFO 2025-06-26 06:00:20,415 resample.py get_mission_start_end():1145 [1] navigation: 2004-09-07T15:34:45.986603776 to 2004-09-07T23:07:55.783975168 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:00:20,417 resample.py get_mission_start_end():1145 [1] hs2 : 2004-09-07T15:34:29.617725184 to 2004-09-07T23:07:55.743977728 (0 days 00:00:00.039997440 before mission_end) INFO 2025-06-26 06:00:20,419 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-09-07T15:34:44.996671616 to 2004-09-07T23:07:55.653983872 (0 days 00:00:00.129991296 before mission_end) INFO 2025-06-26 06:00:20,421 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-09-07T15:34:53.686076416 to 2004-09-07T23:07:55.783975168 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:00:20,423 resample.py get_mission_start_end():1145 [1] isus : 2004-09-07T01:12:37.000000000 to 2004-09-07T23:07:51.000000000 (0 days 00:00:04.783975168 before mission_end) INFO 2025-06-26 06:00:20,424 resample.py get_mission_start_end():1145 [1] biolume : 2004-09-07T15:34:24.488042368 to 2004-09-07T23:07:55.153983872 (0 days 00:00:00.629991296 before mission_end) INFO 2025-06-26 06:00:20,426 resample.py get_mission_start_end():1145 [1] tailcone : 2004-09-07T15:34:23.818122368 to 2004-09-07T23:07:55.733978496 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 06:00:20,427 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00_align.nc mission netCDF file INFO 2025-06-26 06:00:20,427 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:20,727 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:20,782 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:20,831 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:20,879 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:20,925 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:20,971 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,016 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,062 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,102 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,142 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,183 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,223 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,263 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,302 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,341 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,382 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,426 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,470 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,514 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,556 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,599 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,642 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,662 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,680 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,697 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,717 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:21,764 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:00:22,023 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00_1S.nc INFO 2025-06-26 06:00:24,436 create_products.py gulper_odv():401 [1] No gulper times found for 2004.251.00 INFO 2025-06-26 06:00:24,436 process.py archive():337 [1] Archiving steps for 2004.251.00 INFO 2025-06-26 06:00:24,436 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00, BASE_PATH = /data/auv_data INFO 2025-06-26 06:00:24,438 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:00:24,439 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.251.00_1S.nc INFO 2025-06-26 06:00:24,468 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:00:24,469 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.251.00_cal.nc INFO 2025-06-26 06:00:24,589 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:00:24,590 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.251.00_align.nc INFO 2025-06-26 06:00:24,719 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:00:24,756 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004251/2004.251.00 done. INFO 2025-06-26 06:00:24,789 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004251/2004.251.00 done. INFO 2025-06-26 06:00:24,801 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004251/2004.251.00 done. INFO 2025-06-26 06:00:24,826 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004251/2004.251.00 done. INFO 2025-06-26 06:00:24,892 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004251/2004.251.00 done. INFO 2025-06-26 06:00:24,900 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004251/2004.251.00 done. INFO 2025-06-26 06:00:24,928 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004251/2004.251.00 done. INFO 2025-06-26 06:00:24,959 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004251/2004.251.00 done. INFO 2025-06-26 06:00:25,052 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004251/2004.251.00 done. INFO 2025-06-26 06:00:25,052 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:00:25,052 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.251.00/dorado_2004.251.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf