INFO 2025-11-06 15:27:12,489 logs2netcdfs.py download_process_logs():762 [12044] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004237/2004.237.00 INFO 2025-11-06 15:27:12,489 logs2netcdfs.py download_process_logs():791 [12044] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004237/2004.237.00 to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.237.00 INFO 2025-11-06 15:27:25,113 logs2netcdfs.py download_process_logs():802 [12044] Processing mission: dorado 2004.237.00 INFO 2025-11-06 15:27:25,114 logs2netcdfs.py download_process_logs():811 [12044] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.237.00/ctdDriver.log (7694235 bytes) INFO 2025-11-06 15:27:25,475 logs2netcdfs.py download_process_logs():811 [12044] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.237.00/ctdDriver2.log (7693877 bytes) INFO 2025-11-06 15:27:25,894 logs2netcdfs.py download_process_logs():811 [12044] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.237.00/gps.log (42980 bytes) INFO 2025-11-06 15:27:25,937 logs2netcdfs.py download_process_logs():811 [12044] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.237.00/hydroscatlog.log (5247374 bytes) INFO 2025-11-06 15:27:26,381 logs2netcdfs.py download_process_logs():811 [12044] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.237.00/navigation.log (17046439 bytes) INFO 2025-11-06 15:27:27,501 logs2netcdfs.py download_process_logs():811 [12044] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.237.00/isuslog.log (424956 bytes) INFO 2025-11-06 15:27:27,599 logs2netcdfs.py download_process_logs():811 [12044] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.237.00/parosci.log (5250086 bytes) INFO 2025-11-06 15:27:27,915 logs2netcdfs.py download_process_logs():811 [12044] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.237.00/tailCone.log (5250043 bytes) INFO 2025-11-06 15:27:28,409 logs2netcdfs.py download_process_logs():811 [12044] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.237.00/biolume.log (5953676 bytes) INFO 2025-11-06 15:27:28,893 logs2netcdfs.py write_variables():577 [12044] Expanding original timeTag to time60Hz variable for raw data INFO 2025-11-06 15:27:29,107 logs2netcdfs.py download_process_logs():830 [12044] Time to process: 3.99 seconds WARNING 2025-11-06 15:27:29,119 process.py download_process():249 [12044] No lopc.bin file for 2004.237.00 INFO 2025-11-06 15:27:29,328 AUV.py nudge_positions():80 [12044] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-11-06 15:27:29,332 AUV.py nudge_positions():114 [12044] - - - 0 0.00 - - - INFO 2025-11-06 15:27:30,984 AUV.py nudge_positions():203 [12044] 180: 0.160 -0.0014924 0.0006473 9280 30.93 -7.147 3.878 2004-08-24T16:35:42.717155712 INFO 2025-11-06 15:27:31,027 AUV.py nudge_positions():203 [12044] 183: 0.160 -0.0014350 0.0006372 40 0.13 -1635.022 908.316 2004-08-24T16:35:52.716470656 INFO 2025-11-06 15:27:31,457 AUV.py nudge_positions():203 [12044] 225: 0.150 -0.0000251 0.0000053 20 0.06 -58.595 15.432 2004-08-24T16:36:38.723319040 INFO 2025-11-06 15:27:31,687 AUV.py nudge_positions():203 [12044] 245: 0.170 -0.0014320 0.0004202 11980 39.93 -5.314 1.950 2004-08-24T17:16:54.717812096 INFO 2025-11-06 15:27:32,231 AUV.py nudge_positions():203 [12044] 289: 0.160 -0.0012946 0.0004599 11125 37.08 -5.176 2.298 2004-08-24T17:54:42.722443136 INFO 2025-11-06 15:27:32,835 AUV.py nudge_positions():203 [12044] 337: 0.160 -0.0014909 0.0005719 12213 40.71 -5.431 2.603 2004-08-24T18:36:12.721866624 INFO 2025-11-06 15:27:33,290 AUV.py nudge_positions():203 [12044] 385: 0.160 -0.0012678 -0.0002099 12215 40.71 -4.620 -0.955 2004-08-24T19:17:42.721289856 INFO 2025-11-06 15:27:34,004 AUV.py nudge_positions():203 [12044] 437: 0.170 -0.0020925 -0.0019353 12555 41.85 -7.421 -8.569 2004-08-24T20:00:24.715781248 INFO 2025-11-06 15:27:34,399 AUV.py nudge_positions():203 [12044] 484: 0.170 -0.0002737 -0.0015639 13030 43.43 -0.936 -6.673 2004-08-24T20:44:36.724106368 INFO 2025-11-06 15:27:34,739 AUV.py nudge_positions():203 [12044] 527: 0.180 0.0043334 -0.0002566 11879 39.60 16.251 -1.201 2004-08-24T21:24:54.718462208 INFO 2025-11-06 15:27:35,155 AUV.py nudge_positions():203 [12044] 580: 0.170 0.0026911 0.0006764 12160 40.53 9.862 3.092 2004-08-24T22:06:18.718296704 INFO 2025-11-06 15:27:35,196 AUV.py nudge_positions():261 [12044] 563: - - - 4 0.01 - - INFO 2025-11-06 15:27:35,196 AUV.py nudge_positions():267 [12044] Points in final series = 109264 WARNING 2025-11-06 15:27:35,943 AUV.py _create_nudge_plots():376 [12044] No map plot, could not import cartopy WARNING 2025-11-06 15:27:35,992 calibrate.py _depth_process():1925 [12044] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-11-06 15:27:36,442 calibrate.py _geometric_depth_correction():3155 [12044] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:36,885 calibrate.py _geometric_depth_correction():3155 [12044] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:37,237 calibrate.py _geometric_depth_correction():3155 [12044] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:37,239 calibrate.py _ctd_process():2651 [12044] Performing range checking of ['ctd1_salinity'] in 2004.237.00/ctd1.nc INFO 2025-11-06 15:27:37,240 calibrate.py _range_qc_combined_nc():890 [12044] Setting 1 ctd1_salinity values to NaN INFO 2025-11-06 15:27:37,240 calibrate.py _range_qc_combined_nc():902 [12044] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:37,240 calibrate.py _range_qc_combined_nc():928 [12044] Done range checking ctd1 INFO 2025-11-06 15:27:37,658 calibrate.py _geometric_depth_correction():3155 [12044] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:38,016 calibrate.py _geometric_depth_correction():3155 [12044] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:38,017 calibrate.py _ctd_process():2651 [12044] Performing range checking of ['ctd2_salinity'] in 2004.237.00/ctd2.nc INFO 2025-11-06 15:27:38,018 calibrate.py _range_qc_combined_nc():890 [12044] Setting 0 ctd2_salinity values to NaN INFO 2025-11-06 15:27:38,018 calibrate.py _range_qc_combined_nc():902 [12044] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:38,018 calibrate.py _range_qc_combined_nc():928 [12044] Done range checking ctd2 INFO 2025-11-06 15:27:38,038 calibrate.py _biolume_process():2860 [12044] Checking for non-monotonic increasing time60hz INFO 2025-11-06 15:27:38,751 calibrate.py _geometric_depth_correction():3155 [12044] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-11-06 15:27:38,756 calibrate.py process_logs():3280 [12044] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-11-06 15:27:38,756 calibrate.py process_logs():3274 [12044] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.237.00 ERROR 2025-11-06 15:27:38,757 calibrate.py process_logs():3274 [12044] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.237.00 INFO 2025-11-06 15:27:38,846 calibrate.py write_netcdf():3240 [12044] Writing calibrated instrument data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00_cal.nc INFO 2025-11-06 15:27:38,897 calibrate.py write_netcdf():3244 [12044] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-11-06 15:27:38,923 align.py process_cal():144 [12044] Processing /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00_cal.nc INFO 2025-11-06 15:27:38,947 align.py process_cal():211 [12044] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:38,949 align.py process_cal():254 [12044] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:39,007 align.py process_cal():211 [12044] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:39,010 align.py process_cal():254 [12044] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:39,066 align.py process_cal():211 [12044] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:39,069 align.py process_cal():254 [12044] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:39,101 align.py process_cal():166 [12044] Skipping navigation_posx INFO 2025-11-06 15:27:39,101 align.py process_cal():166 [12044] Skipping navigation_posy INFO 2025-11-06 15:27:39,125 align.py process_cal():211 [12044] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:39,128 align.py process_cal():254 [12044] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:39,180 align.py process_cal():211 [12044] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:39,183 align.py process_cal():254 [12044] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,233 align.py process_cal():211 [12044] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:39,236 align.py process_cal():254 [12044] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,287 align.py process_cal():211 [12044] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:39,291 align.py process_cal():254 [12044] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,340 align.py process_cal():211 [12044] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,343 align.py process_cal():254 [12044] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,391 align.py process_cal():211 [12044] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,394 align.py process_cal():254 [12044] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,442 align.py process_cal():211 [12044] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,445 align.py process_cal():254 [12044] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,493 align.py process_cal():211 [12044] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,495 align.py process_cal():254 [12044] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,545 align.py process_cal():211 [12044] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,548 align.py process_cal():254 [12044] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,596 align.py process_cal():211 [12044] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,598 align.py process_cal():254 [12044] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,645 align.py process_cal():211 [12044] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,649 align.py process_cal():254 [12044] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,698 align.py process_cal():211 [12044] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,702 align.py process_cal():254 [12044] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,750 align.py process_cal():211 [12044] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,753 align.py process_cal():254 [12044] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,802 align.py process_cal():211 [12044] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,805 align.py process_cal():254 [12044] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,854 align.py process_cal():211 [12044] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,859 align.py process_cal():254 [12044] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,912 align.py process_cal():211 [12044] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,916 align.py process_cal():254 [12044] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:39,964 align.py process_cal():211 [12044] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:39,968 align.py process_cal():254 [12044] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:40,022 align.py process_cal():211 [12044] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:40,025 align.py process_cal():254 [12044] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:40,074 align.py process_cal():211 [12044] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:40,077 align.py process_cal():254 [12044] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:40,127 align.py process_cal():211 [12044] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:40,130 align.py process_cal():254 [12044] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:40,180 align.py process_cal():211 [12044] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.237.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:40,183 align.py process_cal():254 [12044] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:40,240 align.py process_cal():254 [12044] isus_nitrate: instrument_sample_rate_hz = 0.46 INFO 2025-11-06 15:27:40,277 align.py process_cal():254 [12044] isus_temp: instrument_sample_rate_hz = 0.46 INFO 2025-11-06 15:27:40,315 align.py process_cal():254 [12044] isus_quality: instrument_sample_rate_hz = 0.46 INFO 2025-11-06 15:27:40,355 align.py process_cal():254 [12044] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-11-06 15:27:40,393 align.py process_cal():254 [12044] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:40,540 align.py write_netcdf():342 [12044] Writing aligned data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00_align.nc INFO 2025-11-06 15:27:40,591 align.py write_netcdf():347 [12044] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-11-06 15:27:40,592 resample.py resample_mission():1185 [12044] Using depth_threshold = 10.00 m INFO 2025-11-06 15:27:40,623 resample.py instruments_variables():235 [12044] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00_align.nc mission netCDF file INFO 2025-11-06 15:27:40,630 resample.py instruments_variables():235 [12044] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00_align.nc mission netCDF file INFO 2025-11-06 15:27:40,631 resample.py get_mission_start_end():1145 [12044] navigation: 2004-08-24T16:02:10.355012224 to 2004-08-24T22:06:23.517968000 (0 days 00:00:00.039997056 before mission_end) INFO 2025-11-06 15:27:40,633 resample.py get_mission_start_end():1145 [12044] hs2 : 2004-08-24T16:01:52.316247680 to 2004-08-24T22:06:23.447972480 (0 days 00:00:00.109992576 before mission_end) INFO 2025-11-06 15:27:40,636 resample.py get_mission_start_end():1145 [12044] ctd1 : 2004-08-24T16:02:07.205227904 to 2004-08-24T22:06:23.467971328 (0 days 00:00:00.089993728 before mission_end) INFO 2025-11-06 15:27:40,638 resample.py get_mission_start_end():1145 [12044] ctd2 : 2004-08-24T16:02:07.375216256 to 2004-08-24T22:06:23.447972480 (0 days 00:00:00.109992576 before mission_end) INFO 2025-11-06 15:27:40,639 resample.py get_mission_start_end():1145 [12044] isus : 2004-08-24T14:02:19.000000000 to 2004-08-24T22:06:19.000000000 (0 days 00:00:04.557965056 before mission_end) INFO 2025-11-06 15:27:40,640 resample.py get_mission_start_end():1145 [12044] biolume : 2004-08-24T16:01:47.366552576 to 2004-08-24T22:06:22.488004224 (0 days 00:00:01.069960832 before mission_end) INFO 2025-11-06 15:27:40,643 resample.py get_mission_start_end():1145 [12044] tailcone : 2004-08-24T16:01:48.716494336 to 2004-08-24T22:06:23.557965056 (0 days 00:00:00 before mission_end) INFO 2025-11-06 15:27:40,646 resample.py instruments_variables():235 [12044] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00_align.nc mission netCDF file INFO 2025-11-06 15:27:40,647 resample.py resample_coordinates():249 [12044] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:40,812 resample.py resample_variable():1031 [12044] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:40,841 resample.py resample_variable():1031 [12044] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:40,868 resample.py resample_variable():1031 [12044] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:40,893 resample.py resample_variable():1031 [12044] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:40,919 resample.py resample_variable():1031 [12044] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:40,944 resample.py resample_variable():1031 [12044] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:40,967 resample.py resample_variable():1031 [12044] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:40,988 resample.py resample_variable():1031 [12044] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,009 resample.py resample_variable():1031 [12044] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,030 resample.py resample_variable():1031 [12044] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,051 resample.py resample_variable():1031 [12044] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,070 resample.py resample_variable():1031 [12044] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,088 resample.py resample_variable():1031 [12044] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,108 resample.py resample_variable():1031 [12044] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,130 resample.py resample_variable():1031 [12044] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,150 resample.py resample_variable():1031 [12044] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,170 resample.py resample_variable():1031 [12044] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,190 resample.py resample_variable():1031 [12044] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,212 resample.py resample_variable():1031 [12044] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,231 resample.py resample_variable():1031 [12044] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,252 resample.py resample_variable():1031 [12044] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,272 resample.py resample_variable():1031 [12044] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,285 resample.py resample_variable():1031 [12044] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,295 resample.py resample_variable():1031 [12044] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,302 resample.py resample_variable():1031 [12044] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,311 resample.py resample_variable():1031 [12044] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,333 resample.py resample_variable():1031 [12044] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:41,535 resample.py resample_mission():1297 [12044] Saved resampled mission to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00_1S.nc INFO 2025-11-06 15:27:43,837 create_products.py gulper_odv():401 [12044] No gulper times found for 2004.237.00 INFO 2025-11-06 15:27:43,845 archive.py copy_to_AUVTCD():62 [12044] Archiving /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-11-06 15:27:43,851 archive.py copy_to_AUVTCD():80 [12044] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.237.00_1S.nc INFO 2025-11-06 15:27:43,996 archive.py copy_to_AUVTCD():84 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:43,998 archive.py copy_to_AUVTCD():80 [12044] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.237.00_cal.nc INFO 2025-11-06 15:27:44,333 archive.py copy_to_AUVTCD():84 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:44,337 archive.py copy_to_AUVTCD():80 [12044] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.237.00_align.nc INFO 2025-11-06 15:27:44,651 archive.py copy_to_AUVTCD():84 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:44,742 archive.py copy_to_AUVTCD():110 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004237/2004.237.00 done. INFO 2025-11-06 15:27:44,831 archive.py copy_to_AUVTCD():110 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004237/2004.237.00 done. INFO 2025-11-06 15:27:44,850 archive.py copy_to_AUVTCD():110 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004237/2004.237.00 done. INFO 2025-11-06 15:27:44,916 archive.py copy_to_AUVTCD():110 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004237/2004.237.00 done. INFO 2025-11-06 15:27:45,086 archive.py copy_to_AUVTCD():110 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004237/2004.237.00 done. INFO 2025-11-06 15:27:45,109 archive.py copy_to_AUVTCD():110 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004237/2004.237.00 done. INFO 2025-11-06 15:27:45,174 archive.py copy_to_AUVTCD():110 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004237/2004.237.00 done. INFO 2025-11-06 15:27:45,250 archive.py copy_to_AUVTCD():110 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004237/2004.237.00 done. INFO 2025-11-06 15:27:45,464 archive.py copy_to_AUVTCD():110 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004237/2004.237.00 done. INFO 2025-11-06 15:27:45,464 archive.py copy_to_AUVTCD():118 [12044] Archiving product files INFO 2025-11-06 15:27:45,464 archive.py copy_to_AUVTCD():163 [12044] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.237.00/dorado_2004.237.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf