INFO 2025-06-26 05:51:47,354 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:51:47,354 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Not processed 11/1/04 - Re-portaled 8/12/05 - ctdToUse = ctd1 INFO 2025-06-26 05:51:47,354 process.py process_mission():449 [1] Processing AUVCTD mission 2004.209.03 by user docker_user on host 671049448ece INFO 2025-06-26 05:51:47,355 process.py download_process():165 [1] Download and processing steps for 2004.209.03 INFO 2025-06-26 05:51:47,355 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004209/2004.209.03 INFO 2025-06-26 05:51:47,355 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004209/2004.209.03 to /data/auv_data/dorado/missionlogs/2004.209.03 INFO 2025-06-26 05:51:49,849 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.209.03 INFO 2025-06-26 05:51:49,850 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.209.03/ctdDriver.log (7891003 bytes) INFO 2025-06-26 05:51:50,442 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.209.03/ctdDriver2.log (7887917 bytes) INFO 2025-06-26 05:51:51,021 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.209.03/gps.log (44492 bytes) INFO 2025-06-26 05:51:51,035 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.209.03/hydroscatlog.log (5341394 bytes) INFO 2025-06-26 05:51:51,658 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2004.209.03/hydroscatlog.log: [81497 81498] INFO 2025-06-26 05:51:51,673 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.209.03/navigation.log (17508043 bytes) INFO 2025-06-26 05:51:52,982 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.209.03/isuslog.log (434485 bytes) INFO 2025-06-26 05:51:53,028 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.209.03/parosci.log (5392262 bytes) INFO 2025-06-26 05:51:53,502 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.209.03/tailCone.log (5392363 bytes) INFO 2025-06-26 05:51:54,179 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.209.03/biolume.log (6114972 bytes) INFO 2025-06-26 05:51:54,762 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:51:55,081 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.23 seconds WARNING 2025-06-26 05:51:55,082 process.py download_process():196 [1] No lopc.bin file for 2004.209.03 INFO 2025-06-26 05:51:55,082 process.py calibrate():227 [1] Calibration steps for 2004.209.03 INFO 2025-06-26 05:51:55,280 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:51:55,282 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:51:56,869 calibrate.py _nudge_pos():1806 [1] 179: 0.140 -0.0012448 0.0003682 8427 28.10 -6.562 2.429 2004-07-27T16:14:24.267113728 INFO 2025-06-26 05:51:57,324 calibrate.py _nudge_pos():1806 [1] 226: 0.150 -0.0015905 0.0005357 11705 39.01 -6.041 2.544 2004-07-27T16:54:11.263593216 INFO 2025-06-26 05:51:57,825 calibrate.py _nudge_pos():1806 [1] 277: 0.150 -0.0016080 0.0005571 12145 40.48 -5.888 2.550 2004-07-27T17:35:30.263770112 INFO 2025-06-26 05:51:58,352 calibrate.py _nudge_pos():1806 [1] 330: 0.150 -0.0016193 0.0005005 11710 39.03 -6.152 2.376 2004-07-27T18:15:24.269769472 INFO 2025-06-26 05:51:58,794 calibrate.py _nudge_pos():1806 [1] 375: 0.150 0.0000159 -0.0000058 15 0.05 50.530 -23.147 2004-07-27T18:16:11.266549888 INFO 2025-06-26 05:51:58,814 calibrate.py _nudge_pos():1806 [1] 377: 0.150 -0.0021711 0.0007382 14609 48.70 -6.614 2.809 2004-07-27T19:04:54.266310656 INFO 2025-06-26 05:51:59,247 calibrate.py _nudge_pos():1806 [1] 421: 0.160 -0.0039734 0.0007155 13012 43.38 -13.593 3.056 2004-07-27T19:49:00.265047296 INFO 2025-06-26 05:51:59,992 calibrate.py _nudge_pos():1806 [1] 496: 0.150 -0.0024990 0.0012975 12475 41.58 -8.922 5.782 2004-07-27T20:31:50.268990080 INFO 2025-06-26 05:52:00,420 calibrate.py _nudge_pos():1806 [1] 538: 0.160 0.0032974 0.0031499 13103 43.68 11.209 13.363 2004-07-27T21:16:12.266630656 INFO 2025-06-26 05:52:00,792 calibrate.py _nudge_pos():1806 [1] 575: 0.160 0.0034590 0.0026694 12150 40.50 12.686 12.214 2004-07-27T21:57:18.267698048 INFO 2025-06-26 05:52:01,104 calibrate.py _nudge_pos():1862 [1] 584: - - - 1 0.00 - - INFO 2025-06-26 05:52:01,105 calibrate.py _nudge_pos():1868 [1] Points in final series = 112222 WARNING 2025-06-26 05:52:01,195 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:52:12,989 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:52:13,827 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 52 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:52:14,488 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 52 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:52:14,490 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.209.03/ctd1.nc INFO 2025-06-26 05:52:14,491 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:52:14,492 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:52:14,492 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:52:15,265 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 61 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:52:15,935 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 61 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:52:15,938 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.209.03/ctd2.nc INFO 2025-06-26 05:52:15,939 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:52:15,940 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:52:15,940 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:52:15,974 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:52:17,193 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:52:17,199 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:52:17,200 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.209.03 ERROR 2025-06-26 05:52:17,200 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.209.03 INFO 2025-06-26 05:52:17,291 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03_cal.nc INFO 2025-06-26 05:52:17,385 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:52:17,389 process.py align():251 [1] Alignment steps for 2004.209.03 INFO 2025-06-26 05:52:17,418 align.py process_cal():139 [1] Processing dorado_2004.209.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.209.03 INFO 2025-06-26 05:52:17,451 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:52:17,455 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:52:17,539 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:52:17,545 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:52:17,640 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:52:17,644 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:52:17,692 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:52:17,692 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:52:17,725 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:52:17,730 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:52:17,806 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:52:17,811 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 3.96 INFO 2025-06-26 05:52:17,882 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:52:17,886 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 3.96 INFO 2025-06-26 05:52:17,953 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:52:17,957 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 3.96 INFO 2025-06-26 05:52:18,027 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,031 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,100 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,105 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,171 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,176 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,243 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,247 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,318 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,322 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,391 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,395 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,463 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,468 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,536 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,540 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,607 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,612 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,681 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,686 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,753 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,758 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,827 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,832 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,913 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,918 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:18,987 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:18,992 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:19,061 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:19,066 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:19,134 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:19,139 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:19,206 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.209.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:52:19,210 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:52:19,285 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:52:19,332 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:52:19,380 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:52:19,430 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:52:19,483 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:52:19,535 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03_align.nc INFO 2025-06-26 05:52:19,619 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:52:19,622 process.py resample():273 [1] Resampling steps for 2004.209.03 INFO 2025-06-26 05:52:19,622 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:52:19,649 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03_align.nc mission netCDF file INFO 2025-06-26 05:52:19,656 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03_align.nc mission netCDF file INFO 2025-06-26 05:52:19,658 resample.py get_mission_start_end():1145 [1] navigation: 2004-07-27T15:43:42.273298944 to 2004-07-27T21:57:48.465629312 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 05:52:19,660 resample.py get_mission_start_end():1145 [1] hs2 : 2004-07-27T15:43:24.334527744 to 2004-07-27T21:57:48.405633408 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 05:52:19,661 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-07-27T15:44:13.441163776 to 2004-07-27T21:57:48.435631488 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 05:52:19,663 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-07-27T15:44:22.260559616 to 2004-07-27T21:57:48.475628672 (0 days 00:00:00.029997952 before mission_end) INFO 2025-06-26 05:52:19,665 resample.py get_mission_start_end():1145 [1] isus : 2004-07-27T15:44:36.289598464 to 2004-07-27T21:57:48.505626624 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:52:19,666 resample.py get_mission_start_end():1145 [1] biolume : 2004-07-27T15:43:19.524822912 to 2004-07-27T21:57:47.595654784 (0 days 00:00:00.909971840 before mission_end) INFO 2025-06-26 05:52:19,668 resample.py get_mission_start_end():1145 [1] tailcone : 2004-07-27T15:43:20.144814720 to 2004-07-27T21:57:48.465629312 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 05:52:19,669 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03_align.nc mission netCDF file INFO 2025-06-26 05:52:19,669 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:19,939 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:19,984 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,030 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,073 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,112 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,149 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,185 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,220 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,254 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,288 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,321 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,354 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,386 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,419 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,451 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,483 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,519 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,556 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,591 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,625 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,659 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,694 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,711 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,724 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,738 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,754 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:20,793 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:52:21,029 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03_1S.nc INFO 2025-06-26 05:52:22,245 create_products.py gulper_odv():401 [1] No gulper times found for 2004.209.03 INFO 2025-06-26 05:52:22,246 process.py archive():337 [1] Archiving steps for 2004.209.03 INFO 2025-06-26 05:52:22,246 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03, BASE_PATH = /data/auv_data INFO 2025-06-26 05:52:22,246 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:52:22,247 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.209.03_1S.nc INFO 2025-06-26 05:52:22,268 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:52:22,269 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.209.03_cal.nc INFO 2025-06-26 05:52:22,369 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:52:22,370 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.209.03_align.nc INFO 2025-06-26 05:52:22,467 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:52:22,496 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004209/2004.209.03 done. INFO 2025-06-26 05:52:22,524 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004209/2004.209.03 done. INFO 2025-06-26 05:52:22,528 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004209/2004.209.03 done. INFO 2025-06-26 05:52:22,547 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004209/2004.209.03 done. INFO 2025-06-26 05:52:22,605 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004209/2004.209.03 done. INFO 2025-06-26 05:52:22,611 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004209/2004.209.03 done. INFO 2025-06-26 05:52:22,632 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004209/2004.209.03 done. INFO 2025-06-26 05:52:22,656 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004209/2004.209.03 done. INFO 2025-06-26 05:52:22,725 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004209/2004.209.03 done. INFO 2025-06-26 05:52:22,725 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:52:22,725 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.209.03/dorado_2004.209.03_processing.log /Volumes/AUVCTD/surveys/2004/netcdf