INFO 2025-06-26 05:51:17,887 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:51:17,887 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Not processed 11/1/04 - Re-portaled 8/12/05 - ctdToUse = ctd1 INFO 2025-06-26 05:51:17,887 process.py process_mission():449 [1] Processing AUVCTD mission 2004.208.01 by user docker_user on host 671049448ece INFO 2025-06-26 05:51:17,887 process.py download_process():165 [1] Download and processing steps for 2004.208.01 INFO 2025-06-26 05:51:17,887 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004208/2004.208.01 INFO 2025-06-26 05:51:17,887 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004208/2004.208.01 to /data/auv_data/dorado/missionlogs/2004.208.01 INFO 2025-06-26 05:51:19,911 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.208.01 INFO 2025-06-26 05:51:19,911 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.208.01/ctdDriver.log (6144203 bytes) INFO 2025-06-26 05:51:20,357 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.208.01/ctdDriver2.log (6144197 bytes) INFO 2025-06-26 05:51:20,817 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.208.01/gps.log (46652 bytes) INFO 2025-06-26 05:51:20,830 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.208.01/hydroscatlog.log (4191374 bytes) INFO 2025-06-26 05:51:21,321 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2004.208.01/hydroscatlog.log: [ 39 11063] INFO 2025-06-26 05:51:21,331 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.208.01/navigation.log (13611943 bytes) INFO 2025-06-26 05:51:22,339 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.208.01/isuslog.log (338101 bytes) INFO 2025-06-26 05:51:22,376 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.208.01/parosci.log (4193462 bytes) INFO 2025-06-26 05:51:22,732 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.208.01/tailCone.log (4193227 bytes) INFO 2025-06-26 05:51:23,261 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.208.01/biolume.log (4756060 bytes) INFO 2025-06-26 05:51:23,709 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:51:23,957 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.05 seconds WARNING 2025-06-26 05:51:23,957 process.py download_process():196 [1] No lopc.bin file for 2004.208.01 INFO 2025-06-26 05:51:23,958 process.py calibrate():227 [1] Calibration steps for 2004.208.01 INFO 2025-06-26 05:51:24,199 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:51:24,202 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:51:25,755 calibrate.py _nudge_pos():1806 [1] 181: 0.100 0.0026442 0.0022775 11335 37.78 10.394 11.170 2004-07-26T17:07:06.079320192 INFO 2025-06-26 05:51:25,855 calibrate.py _nudge_pos():1806 [1] 191: 0.100 -0.0000081 0.0000028 50 0.16 -7.362 3.161 2004-07-26T17:07:25.078018688 INFO 2025-06-26 05:51:26,277 calibrate.py _nudge_pos():1806 [1] 234: 0.100 0.0030136 0.0008478 11603 38.68 11.569 4.061 2004-07-26T17:46:48.076142080 INFO 2025-06-26 05:51:26,890 calibrate.py _nudge_pos():1806 [1] 298: 0.110 0.0025057 0.0015207 11235 37.45 9.935 7.525 2004-07-26T18:25:18.077896064 INFO 2025-06-26 05:51:27,477 calibrate.py _nudge_pos():1806 [1] 360: 0.100 0.0013524 0.0026669 11392 37.98 5.286 13.012 2004-07-26T19:04:18.077595264 INFO 2025-06-26 05:51:27,941 calibrate.py _nudge_pos():1806 [1] 409: 0.110 0.0016474 0.0033789 11460 38.20 6.403 16.392 2004-07-26T19:43:18.077294336 INFO 2025-06-26 05:51:28,471 calibrate.py _nudge_pos():1806 [1] 463: 0.100 0.0016629 0.0032123 11555 38.51 6.409 15.456 2004-07-26T20:22:42.085348608 INFO 2025-06-26 05:51:29,139 calibrate.py _nudge_pos():1806 [1] 531: 0.110 0.0023401 0.0037039 11033 36.78 9.443 18.661 2004-07-26T21:00:36.079569280 INFO 2025-06-26 05:51:29,635 calibrate.py _nudge_pos():1806 [1] 582: 0.110 0.0000037 0.0000008 15 0.05 11.730 3.149 2004-07-26T21:01:29.075938944 INFO 2025-06-26 05:51:29,792 calibrate.py _nudge_pos():1806 [1] 598: 0.110 0.0003307 0.0007636 4550 15.16 3.237 9.332 2004-07-26T21:16:54.082571520 INFO 2025-06-26 05:51:30,158 calibrate.py _nudge_pos():1862 [1] 614: - - - 5 0.01 - - INFO 2025-06-26 05:51:30,158 calibrate.py _nudge_pos():1868 [1] Points in final series = 87248 WARNING 2025-06-26 05:51:30,229 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:51:39,461 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:51:40,102 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:51:40,615 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:51:40,618 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.208.01/ctd1.nc INFO 2025-06-26 05:51:40,619 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 05:51:40,619 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:51:40,620 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:51:41,225 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:51:41,759 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:51:41,761 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.208.01/ctd2.nc INFO 2025-06-26 05:51:41,763 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:51:41,763 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:51:41,763 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:51:41,791 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:51:42,767 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:51:42,773 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:51:42,773 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.208.01 ERROR 2025-06-26 05:51:42,774 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.208.01 INFO 2025-06-26 05:51:42,843 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01_cal.nc INFO 2025-06-26 05:51:42,928 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:51:42,932 process.py align():251 [1] Alignment steps for 2004.208.01 INFO 2025-06-26 05:51:42,960 align.py process_cal():139 [1] Processing dorado_2004.208.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.208.01 INFO 2025-06-26 05:51:42,987 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:51:42,991 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:51:43,059 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:51:43,064 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:51:43,128 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:51:43,132 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:51:43,170 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:51:43,170 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:51:43,196 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:51:43,200 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:51:43,261 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:51:43,265 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,321 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:51:43,325 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,381 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:51:43,386 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,442 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:43,446 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,502 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:43,506 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,562 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:43,566 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,620 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:43,624 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,678 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:43,682 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,737 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:43,741 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,796 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:43,800 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,856 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:43,860 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,915 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:43,919 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:43,976 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:43,979 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:44,036 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:44,040 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:44,095 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:44,099 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:44,154 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:44,159 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:44,215 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:44,220 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:44,275 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:44,279 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:44,336 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:44,340 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:44,396 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.208.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:44,399 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:44,460 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:51:44,501 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:51:44,540 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:51:44,583 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:51:44,627 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:51:44,669 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01_align.nc INFO 2025-06-26 05:51:44,745 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:51:44,748 process.py resample():273 [1] Resampling steps for 2004.208.01 INFO 2025-06-26 05:51:44,749 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:51:44,774 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01_align.nc mission netCDF file INFO 2025-06-26 05:51:44,780 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01_align.nc mission netCDF file INFO 2025-06-26 05:51:44,781 resample.py get_mission_start_end():1145 [1] navigation: 2004-07-26T16:26:41.285430016 to 2004-07-26T21:17:32.079968640 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:51:44,783 resample.py get_mission_start_end():1145 [1] hs2 : 2004-07-26T16:26:23.356658176 to 2004-07-26T21:17:31.939978112 (0 days 00:00:00.139990528 before mission_end) INFO 2025-06-26 05:51:44,785 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-07-26T16:26:39.155575808 to 2004-07-26T21:17:32.009973248 (0 days 00:00:00.069995392 before mission_end) INFO 2025-06-26 05:51:44,786 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-07-26T16:26:39.445555968 to 2004-07-26T21:17:32.019972864 (0 days 00:00:00.059995776 before mission_end) INFO 2025-06-26 05:51:44,788 resample.py get_mission_start_end():1145 [1] isus : 2004-07-26T16:27:35.351726080 to 2004-07-26T21:17:30.790056960 (0 days 00:00:01.289911680 before mission_end) INFO 2025-06-26 05:51:44,789 resample.py get_mission_start_end():1145 [1] biolume : 2004-07-26T16:26:18.516955392 to 2004-07-26T21:17:31.020006912 (0 days 00:00:01.059961728 before mission_end) INFO 2025-06-26 05:51:44,791 resample.py get_mission_start_end():1145 [1] tailcone : 2004-07-26T16:26:21.316797696 to 2004-07-26T21:17:31.999974016 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 05:51:44,792 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01_align.nc mission netCDF file INFO 2025-06-26 05:51:44,792 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:44,987 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,024 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,059 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,095 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,126 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,156 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,187 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,216 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,243 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,271 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,298 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,324 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,350 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,377 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,405 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,431 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,461 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,490 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,519 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,547 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,575 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,603 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,617 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,631 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,643 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,657 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,689 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:45,884 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01_1S.nc INFO 2025-06-26 05:51:46,933 create_products.py gulper_odv():401 [1] No gulper times found for 2004.208.01 INFO 2025-06-26 05:51:46,933 process.py archive():337 [1] Archiving steps for 2004.208.01 INFO 2025-06-26 05:51:46,933 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01, BASE_PATH = /data/auv_data INFO 2025-06-26 05:51:46,934 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:51:46,935 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.208.01_1S.nc INFO 2025-06-26 05:51:46,954 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:51:46,955 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.208.01_cal.nc INFO 2025-06-26 05:51:47,030 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:51:47,031 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.208.01_align.nc INFO 2025-06-26 05:51:47,109 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:51:47,132 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004208/2004.208.01 done. INFO 2025-06-26 05:51:47,154 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004208/2004.208.01 done. INFO 2025-06-26 05:51:47,159 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004208/2004.208.01 done. INFO 2025-06-26 05:51:47,176 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004208/2004.208.01 done. INFO 2025-06-26 05:51:47,225 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004208/2004.208.01 done. INFO 2025-06-26 05:51:47,232 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004208/2004.208.01 done. INFO 2025-06-26 05:51:47,248 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004208/2004.208.01 done. INFO 2025-06-26 05:51:47,269 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004208/2004.208.01 done. INFO 2025-06-26 05:51:47,324 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004208/2004.208.01 done. INFO 2025-06-26 05:51:47,324 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:51:47,325 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.208.01/dorado_2004.208.01_processing.log /Volumes/AUVCTD/surveys/2004/netcdf