INFO 2025-06-26 05:51:11,289 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:51:11,289 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Not processed 11/1/04 - Re-portaled 8/11/05hydroscatlog.log is 0 size. - ctdToUse = ctd1 INFO 2025-06-26 05:51:11,289 process.py process_mission():449 [1] Processing AUVCTD mission 2004.197.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:51:11,289 process.py download_process():165 [1] Download and processing steps for 2004.197.02 INFO 2025-06-26 05:51:11,289 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004197/2004.197.02 INFO 2025-06-26 05:51:11,289 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004197/2004.197.02 to /data/auv_data/dorado/missionlogs/2004.197.02 INFO 2025-06-26 05:51:12,267 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.197.02 INFO 2025-06-26 05:51:12,267 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.197.02/ctdDriver.log (1640539 bytes) INFO 2025-06-26 05:51:12,389 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.197.02/ctdDriver2.log (1640533 bytes) INFO 2025-06-26 05:51:12,513 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.197.02/gps.log (14252 bytes) INFO 2025-06-26 05:51:12,522 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.197.02/hydroscatlog.log (0 bytes) WARNING 2025-06-26 05:51:12,523 logs2netcdfs.py download_process_logs():790 [1] /data/auv_data/dorado/missionlogs/2004.197.02/hydroscatlog.log is empty INFO 2025-06-26 05:51:12,523 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.197.02/navigation.log (3634027 bytes) INFO 2025-06-26 05:51:12,805 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.197.02/isuslog.log (89301 bytes) INFO 2025-06-26 05:51:12,818 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.197.02/parosci.log (1123094 bytes) INFO 2025-06-26 05:51:12,913 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.197.02/tailCone.log (1123243 bytes) INFO 2025-06-26 05:51:13,054 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.197.02/biolume.log (1275820 bytes) INFO 2025-06-26 05:51:13,176 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:51:13,244 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.98 seconds WARNING 2025-06-26 05:51:13,244 process.py download_process():196 [1] No lopc.bin file for 2004.197.02 INFO 2025-06-26 05:51:13,244 process.py calibrate():227 [1] Calibration steps for 2004.197.02 INFO 2025-06-26 05:51:13,323 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:51:13,324 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:51:13,977 calibrate.py _nudge_pos():1806 [1] 89: 0.010 0.0029669 0.0020343 11460 38.20 11.530 9.869 2004-07-15T19:54:03.185311616 INFO 2025-06-26 05:51:14,582 calibrate.py _nudge_pos():1806 [1] 154: 0.020 0.0015836 0.0021820 11020 36.73 6.399 11.008 2004-07-15T20:31:51.179943296 INFO 2025-06-26 05:51:14,873 calibrate.py _nudge_pos():1862 [1] 164: - - - 2 0.00 - - INFO 2025-06-26 05:51:14,873 calibrate.py _nudge_pos():1868 [1] Points in final series = 23287 WARNING 2025-06-26 05:51:14,895 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:51:15,083 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:51:15,222 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:51:15,223 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.197.02/ctd1.nc INFO 2025-06-26 05:51:15,224 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:51:15,225 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:51:15,225 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:51:15,399 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:51:15,537 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:51:15,539 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.197.02/ctd2.nc INFO 2025-06-26 05:51:15,540 calibrate.py _range_qc_combined_nc():898 [1] Setting 192 ctd2_salinity values to NaN INFO 2025-06-26 05:51:15,540 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:51:15,540 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:51:15,552 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:51:15,792 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: 0 seconds ERROR 2025-06-26 05:51:15,797 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:51:15,797 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.197.02 ERROR 2025-06-26 05:51:15,797 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.197.02 INFO 2025-06-26 05:51:15,818 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02_cal.nc INFO 2025-06-26 05:51:15,865 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:51:15,868 process.py align():251 [1] Alignment steps for 2004.197.02 INFO 2025-06-26 05:51:15,889 align.py process_cal():139 [1] Processing dorado_2004.197.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.197.02 INFO 2025-06-26 05:51:15,899 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:51:15,901 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:51:15,925 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:51:15,927 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:51:15,949 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:51:15,951 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:51:15,965 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:51:15,965 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:51:15,974 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:51:15,976 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:51:15,999 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,002 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,026 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,029 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,049 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,051 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,071 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,073 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,094 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,096 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,116 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,118 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,139 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,141 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,161 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,163 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,183 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,185 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,211 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,213 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,235 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,237 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,258 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,260 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,281 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,283 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,304 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,306 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,327 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,329 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,350 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,353 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,374 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.197.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:51:16,376 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:51:16,399 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:51:16,418 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:51:16,436 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:51:16,456 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:51:16,476 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:51:16,495 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02_align.nc INFO 2025-06-26 05:51:16,536 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:51:16,538 process.py resample():273 [1] Resampling steps for 2004.197.02 INFO 2025-06-26 05:51:16,539 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:51:16,559 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02_align.nc mission netCDF file INFO 2025-06-26 05:51:16,563 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02_align.nc mission netCDF file INFO 2025-06-26 05:51:16,564 resample.py get_mission_start_end():1145 [1] navigation: 2004-07-15T19:14:45.386831744 to 2004-07-15T20:32:22.577792384 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 05:51:16,565 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-07-15T19:14:44.066922240 to 2004-07-15T20:32:22.457800576 (0 days 00:00:00.149989632 before mission_end) INFO 2025-06-26 05:51:16,566 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-07-15T19:14:43.856936448 to 2004-07-15T20:32:22.487798400 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 05:51:16,567 resample.py get_mission_start_end():1145 [1] isus : 2004-07-15T19:15:40.053086720 to 2004-07-15T20:32:22.147821696 (0 days 00:00:00.459968512 before mission_end) INFO 2025-06-26 05:51:16,569 resample.py get_mission_start_end():1145 [1] biolume : 2004-07-15T19:14:23.428301824 to 2004-07-15T20:32:22.067792896 (0 days 00:00:00.539997312 before mission_end) INFO 2025-06-26 05:51:16,570 resample.py get_mission_start_end():1145 [1] tailcone : 2004-07-15T19:14:24.178284672 to 2004-07-15T20:32:22.607790208 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:51:16,570 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02_align.nc mission netCDF file INFO 2025-06-26 05:51:16,571 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,642 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,657 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,671 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,685 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,698 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,710 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,722 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,733 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,745 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,757 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,769 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,781 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,794 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,807 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,821 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,836 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,850 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,863 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,877 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,887 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,896 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,905 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,915 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:16,931 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:51:17,049 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02_1S.nc INFO 2025-06-26 05:51:17,717 create_products.py gulper_odv():401 [1] No gulper times found for 2004.197.02 INFO 2025-06-26 05:51:17,717 process.py archive():337 [1] Archiving steps for 2004.197.02 INFO 2025-06-26 05:51:17,717 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:51:17,717 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:51:17,718 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.197.02_1S.nc INFO 2025-06-26 05:51:17,729 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:51:17,730 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.197.02_cal.nc INFO 2025-06-26 05:51:17,756 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:51:17,757 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.197.02_align.nc INFO 2025-06-26 05:51:17,781 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:51:17,795 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004197/2004.197.02 done. INFO 2025-06-26 05:51:17,808 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004197/2004.197.02 done. INFO 2025-06-26 05:51:17,812 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004197/2004.197.02 done. INFO 2025-06-26 05:51:17,829 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004197/2004.197.02 done. INFO 2025-06-26 05:51:17,836 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004197/2004.197.02 done. INFO 2025-06-26 05:51:17,845 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004197/2004.197.02 done. INFO 2025-06-26 05:51:17,855 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004197/2004.197.02 done. INFO 2025-06-26 05:51:17,874 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004197/2004.197.02 done. INFO 2025-06-26 05:51:17,875 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:51:17,875 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.197.02/dorado_2004.197.02_processing.log /Volumes/AUVCTD/surveys/2004/netcdf