INFO 2025-06-26 05:50:46,558 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:50:46,558 process.py process_mission():434 [1] dorado_info[mission]["comment"] = re-portaled 8/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:50:46,558 process.py process_mission():449 [1] Processing AUVCTD mission 2004.196.03 by user docker_user on host 671049448ece INFO 2025-06-26 05:50:46,558 process.py download_process():165 [1] Download and processing steps for 2004.196.03 INFO 2025-06-26 05:50:46,558 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004196/2004.196.03 INFO 2025-06-26 05:50:46,558 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004196/2004.196.03 to /data/auv_data/dorado/missionlogs/2004.196.03 INFO 2025-06-26 05:50:47,620 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.196.03 INFO 2025-06-26 05:50:47,620 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.03/ctdDriver.log (1127147 bytes) INFO 2025-06-26 05:50:47,707 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.03/ctdDriver2.log (1127141 bytes) INFO 2025-06-26 05:50:47,793 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.03/gps.log (10220 bytes) INFO 2025-06-26 05:50:47,801 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.03/hydroscatlog.log (772394 bytes) INFO 2025-06-26 05:50:47,904 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.03/navigation.log (2496787 bytes) INFO 2025-06-26 05:50:48,102 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.03/isuslog.log (60949 bytes) INFO 2025-06-26 05:50:48,112 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.03/parosci.log (773078 bytes) INFO 2025-06-26 05:50:48,181 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.03/tailCone.log (773035 bytes) INFO 2025-06-26 05:50:48,302 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.03/biolume.log (878972 bytes) INFO 2025-06-26 05:50:48,387 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:50:48,437 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.82 seconds WARNING 2025-06-26 05:50:48,437 process.py download_process():196 [1] No lopc.bin file for 2004.196.03 INFO 2025-06-26 05:50:48,437 process.py calibrate():227 [1] Calibration steps for 2004.196.03 INFO 2025-06-26 05:50:48,510 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:50:48,511 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:50:49,086 calibrate.py _nudge_pos():1806 [1] 79: 0.200 -0.0000908 0.0005872 3925 13.08 -1.030 8.319 2004-07-14T20:01:16.991002112 INFO 2025-06-26 05:50:49,414 calibrate.py _nudge_pos():1806 [1] 114: 0.200 -0.0024507 0.0008811 11499 38.33 -9.488 4.260 2004-07-14T20:40:10.991112192 INFO 2025-06-26 05:50:49,490 calibrate.py _nudge_pos():1806 [1] 122: 0.200 0.0000165 0.0000142 44 0.14 17.062 18.419 2004-07-14T20:40:26.990016256 INFO 2025-06-26 05:50:49,563 calibrate.py _nudge_pos():1862 [1] 109: - - - 3 0.01 - - INFO 2025-06-26 05:50:49,563 calibrate.py _nudge_pos():1868 [1] Points in final series = 15952 WARNING 2025-06-26 05:50:49,579 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:50:49,708 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:50:49,846 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:50:49,944 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:50:49,946 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.196.03/ctd1.nc INFO 2025-06-26 05:50:49,947 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:50:49,948 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:50:49,948 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:50:50,071 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:50:50,167 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:50:50,169 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.196.03/ctd2.nc WARNING 2025-06-26 05:50:50,170 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (2100) ctd2_salinity values found outside of range. This may indicate a problem with the ctd2 data. INFO 2025-06-26 05:50:50,170 calibrate.py _range_qc_combined_nc():898 [1] Setting 2100 ctd2_salinity values to NaN INFO 2025-06-26 05:50:50,171 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:50:50,171 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:50:50,181 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:50:50,350 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:50:50,355 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:50:50,355 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.196.03 ERROR 2025-06-26 05:50:50,355 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.196.03 INFO 2025-06-26 05:50:50,371 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03_cal.nc INFO 2025-06-26 05:50:50,417 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:50:50,421 process.py align():251 [1] Alignment steps for 2004.196.03 INFO 2025-06-26 05:50:50,444 align.py process_cal():139 [1] Processing dorado_2004.196.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.196.03 INFO 2025-06-26 05:50:50,453 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:50,455 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:50,477 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:50,479 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:50,498 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:50,500 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:50,510 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:50:50,510 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:50:50,518 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:50,520 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:50,538 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:50,540 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,557 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:50,558 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,575 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:50,577 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,593 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,595 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,612 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,614 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,647 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,650 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,667 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,669 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,686 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,688 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,704 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,707 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,723 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,725 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,743 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,745 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,762 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,765 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,781 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,783 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,800 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,803 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,820 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,822 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,840 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,842 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,860 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,862 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,880 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,882 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,899 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,901 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,919 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:50,921 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:50,941 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:50,958 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:50,975 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:50,993 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:50:51,011 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:51,027 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03_align.nc INFO 2025-06-26 05:50:51,076 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:50:51,078 process.py resample():273 [1] Resampling steps for 2004.196.03 INFO 2025-06-26 05:50:51,079 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:50:51,101 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03_align.nc mission netCDF file INFO 2025-06-26 05:50:51,106 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03_align.nc mission netCDF file INFO 2025-06-26 05:50:51,107 resample.py get_mission_start_end():1145 [1] navigation: 2004-07-14T19:47:15.598641408 to 2004-07-14T20:40:34.789481856 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:50:51,108 resample.py get_mission_start_end():1145 [1] hs2 : 2004-07-14T19:46:59.209764224 to 2004-07-14T20:40:34.769483264 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 05:50:51,109 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-07-14T19:47:14.528714624 to 2004-07-14T20:40:34.699487872 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 05:50:51,111 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-07-14T19:47:14.608709376 to 2004-07-14T20:40:34.779482624 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 05:50:51,112 resample.py get_mission_start_end():1145 [1] isus : 2004-07-14T19:48:10.974847744 to 2004-07-14T20:40:34.449505152 (0 days 00:00:00.339976704 before mission_end) INFO 2025-06-26 05:50:51,113 resample.py get_mission_start_end():1145 [1] biolume : 2004-07-14T19:46:54.040084096 to 2004-07-14T20:40:33.769517440 (0 days 00:00:01.019964416 before mission_end) INFO 2025-06-26 05:50:51,114 resample.py get_mission_start_end():1145 [1] tailcone : 2004-07-14T19:46:55.520016896 to 2004-07-14T20:40:34.699487872 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 05:50:51,115 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03_align.nc mission netCDF file INFO 2025-06-26 05:50:51,115 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,173 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,186 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,198 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,210 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,223 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,235 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,246 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,258 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,268 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,278 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,288 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,298 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,308 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,318 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,329 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,339 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,350 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,362 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,377 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,388 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,399 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,410 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,418 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,428 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,436 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,446 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,459 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:51,580 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03_1S.nc INFO 2025-06-26 05:50:52,398 create_products.py gulper_odv():401 [1] No gulper times found for 2004.196.03 INFO 2025-06-26 05:50:52,398 process.py archive():337 [1] Archiving steps for 2004.196.03 INFO 2025-06-26 05:50:52,398 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03, BASE_PATH = /data/auv_data INFO 2025-06-26 05:50:52,398 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:50:52,400 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.196.03_1S.nc INFO 2025-06-26 05:50:52,410 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:52,410 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.196.03_cal.nc INFO 2025-06-26 05:50:52,432 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:52,432 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.196.03_align.nc INFO 2025-06-26 05:50:52,452 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:52,465 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.03 done. INFO 2025-06-26 05:50:52,474 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.03 done. INFO 2025-06-26 05:50:52,478 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.03 done. INFO 2025-06-26 05:50:52,486 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.03 done. INFO 2025-06-26 05:50:52,499 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.03 done. INFO 2025-06-26 05:50:52,504 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.03 done. INFO 2025-06-26 05:50:52,512 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.03 done. INFO 2025-06-26 05:50:52,523 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.03 done. INFO 2025-06-26 05:50:52,539 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.03 done. INFO 2025-06-26 05:50:52,540 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:50:52,540 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.03/dorado_2004.196.03_processing.log /Volumes/AUVCTD/surveys/2004/netcdf