INFO 2025-06-26 05:50:33,773 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:50:33,773 process.py process_mission():434 [1] dorado_info[mission]["comment"] = re-portaled 8/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:50:33,773 process.py process_mission():449 [1] Processing AUVCTD mission 2004.196.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:50:33,773 process.py download_process():165 [1] Download and processing steps for 2004.196.02 INFO 2025-06-26 05:50:33,773 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004196/2004.196.02 INFO 2025-06-26 05:50:33,773 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004196/2004.196.02 to /data/auv_data/dorado/missionlogs/2004.196.02 INFO 2025-06-26 05:50:35,401 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.196.02 INFO 2025-06-26 05:50:35,401 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.02/ctdDriver.log (3016331 bytes) INFO 2025-06-26 05:50:35,622 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.02/ctdDriver2.log (3016237 bytes) INFO 2025-06-26 05:50:35,843 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.02/gps.log (29516 bytes) INFO 2025-06-26 05:50:35,854 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.02/hydroscatlog.log (2060054 bytes) INFO 2025-06-26 05:50:36,105 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.02/navigation.log (6681955 bytes) INFO 2025-06-26 05:50:36,617 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.02/isuslog.log (164917 bytes) INFO 2025-06-26 05:50:36,637 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.02/parosci.log (2059718 bytes) INFO 2025-06-26 05:50:36,810 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.02/tailCone.log (2060923 bytes) INFO 2025-06-26 05:50:37,062 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.196.02/biolume.log (2339068 bytes) INFO 2025-06-26 05:50:37,279 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:50:37,402 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.00 seconds WARNING 2025-06-26 05:50:37,402 process.py download_process():196 [1] No lopc.bin file for 2004.196.02 INFO 2025-06-26 05:50:37,402 process.py calibrate():227 [1] Calibration steps for 2004.196.02 INFO 2025-06-26 05:50:37,532 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:50:37,534 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:50:38,008 calibrate.py _nudge_pos():1806 [1] 70: 0.010 0.0049177 0.0000637 11348 37.83 19.299 0.312 2004-07-14T17:48:35.166424576 INFO 2025-06-26 05:50:38,477 calibrate.py _nudge_pos():1806 [1] 121: 0.010 -0.0000483 0.0000042 65 0.21 -33.610 3.676 2004-07-14T17:49:38.172108160 INFO 2025-06-26 05:50:38,542 calibrate.py _nudge_pos():1806 [1] 128: 0.200 0.0026444 0.0024073 11474 38.24 10.264 11.664 2004-07-14T18:27:58.974492544 INFO 2025-06-26 05:50:38,975 calibrate.py _nudge_pos():1806 [1] 175: 0.010 0.0000009 0.0000042 20 0.06 2.137 12.428 2004-07-14T18:28:49.171053824 INFO 2025-06-26 05:50:38,985 calibrate.py _nudge_pos():1806 [1] 176: 0.010 0.0000303 -0.0000073 15 0.05 96.391 -28.870 2004-07-14T18:28:52.170848384 INFO 2025-06-26 05:50:39,133 calibrate.py _nudge_pos():1806 [1] 192: 0.010 0.0030131 0.0012436 11390 37.96 11.781 6.070 2004-07-14T19:07:05.173766912 INFO 2025-06-26 05:50:39,754 calibrate.py _nudge_pos():1806 [1] 258: 0.010 0.0010705 0.0004926 4865 16.21 9.800 5.630 2004-07-14T19:24:23.172659200 INFO 2025-06-26 05:50:40,194 calibrate.py _nudge_pos():1806 [1] 305: 0.010 -0.0001125 0.0000189 1810 6.03 -2.770 0.580 2004-07-14T19:31:11.174709120 INFO 2025-06-26 05:50:41,065 calibrate.py _nudge_pos():1862 [1] 376: - - - 1 0.00 - - INFO 2025-06-26 05:50:41,065 calibrate.py _nudge_pos():1868 [1] Points in final series = 42749 WARNING 2025-06-26 05:50:41,102 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:50:41,423 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:50:41,766 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:50:42,020 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:50:42,022 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.196.02/ctd1.nc INFO 2025-06-26 05:50:42,023 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:50:42,023 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:50:42,023 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:50:42,336 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:50:42,611 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:50:42,613 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.196.02/ctd2.nc WARNING 2025-06-26 05:50:42,615 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (23837) ctd2_salinity values found outside of range. This may indicate a problem with the ctd2 data. INFO 2025-06-26 05:50:42,615 calibrate.py _range_qc_combined_nc():898 [1] Setting 23837 ctd2_salinity values to NaN INFO 2025-06-26 05:50:42,615 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:50:42,615 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:50:42,632 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:50:43,086 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [513300] INFO 2025-06-26 05:50:43,160 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:50:43,166 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:50:43,166 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.196.02 ERROR 2025-06-26 05:50:43,166 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.196.02 INFO 2025-06-26 05:50:43,203 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02_cal.nc INFO 2025-06-26 05:50:43,264 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:50:43,268 process.py align():251 [1] Alignment steps for 2004.196.02 INFO 2025-06-26 05:50:43,292 align.py process_cal():139 [1] Processing dorado_2004.196.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.196.02 INFO 2025-06-26 05:50:43,308 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:43,310 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:43,346 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:43,349 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:43,383 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:43,386 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:43,406 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:50:43,407 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:50:43,421 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:43,423 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:43,457 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:43,460 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,491 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:43,494 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,525 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:43,527 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,560 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,562 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,595 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,598 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,630 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,633 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,665 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,668 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,700 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,704 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,736 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,738 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,770 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,773 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,805 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,808 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,840 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,843 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,875 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,878 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,910 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,913 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,945 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,948 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:43,981 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:43,984 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:44,017 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:44,020 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:44,053 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:44,056 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:44,088 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:44,091 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:44,124 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.196.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:44,126 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:44,162 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:44,187 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:44,213 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:44,240 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:50:44,268 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:44,294 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02_align.nc INFO 2025-06-26 05:50:44,354 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:50:44,356 process.py resample():273 [1] Resampling steps for 2004.196.02 INFO 2025-06-26 05:50:44,357 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:50:44,381 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02_align.nc mission netCDF file INFO 2025-06-26 05:50:44,386 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02_align.nc mission netCDF file INFO 2025-06-26 05:50:44,387 resample.py get_mission_start_end():1145 [1] navigation: 2004-07-14T17:09:58.175149184 to 2004-07-14T19:32:43.368393472 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:50:44,388 resample.py get_mission_start_end():1145 [1] hs2 : 2004-07-14T17:09:40.236378240 to 2004-07-14T19:32:43.358393856 (0 days 00:00:00.009999616 before mission_end) INFO 2025-06-26 05:50:44,390 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-07-14T17:09:56.065293824 to 2004-07-14T19:32:43.368393472 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:50:44,391 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-07-14T17:09:56.105291136 to 2004-07-14T19:32:43.148408448 (0 days 00:00:00.219985024 before mission_end) INFO 2025-06-26 05:50:44,392 resample.py get_mission_start_end():1145 [1] isus : 2004-07-14T17:10:52.301441408 to 2004-07-14T19:32:42.788433024 (0 days 00:00:00.579960448 before mission_end) INFO 2025-06-26 05:50:44,394 resample.py get_mission_start_end():1145 [1] biolume : 2004-07-14T17:09:35.396675328 to 2004-07-14T19:32:42.668406912 (0 days 00:00:00.699986560 before mission_end) INFO 2025-06-26 05:50:44,395 resample.py get_mission_start_end():1145 [1] tailcone : 2004-07-14T17:09:37.696552064 to 2004-07-14T19:32:43.308397568 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 05:50:44,396 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02_align.nc mission netCDF file INFO 2025-06-26 05:50:44,396 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,507 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,528 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,549 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,571 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,590 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,608 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,626 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,643 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,660 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,676 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,692 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,708 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,724 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,741 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,757 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,773 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,791 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,809 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,871 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,889 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,906 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,923 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,934 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,944 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,954 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,966 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:44,986 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:45,129 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02_1S.nc INFO 2025-06-26 05:50:46,316 create_products.py gulper_odv():401 [1] No gulper times found for 2004.196.02 INFO 2025-06-26 05:50:46,316 process.py archive():337 [1] Archiving steps for 2004.196.02 INFO 2025-06-26 05:50:46,317 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:50:46,317 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:50:46,318 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.196.02_1S.nc INFO 2025-06-26 05:50:46,330 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:46,331 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.196.02_cal.nc INFO 2025-06-26 05:50:46,373 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:46,374 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.196.02_align.nc INFO 2025-06-26 05:50:46,417 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:46,433 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.02 done. INFO 2025-06-26 05:50:46,446 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.02 done. INFO 2025-06-26 05:50:46,450 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.02 done. INFO 2025-06-26 05:50:46,460 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.02 done. INFO 2025-06-26 05:50:46,484 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.02 done. INFO 2025-06-26 05:50:46,489 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.02 done. INFO 2025-06-26 05:50:46,500 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.02 done. INFO 2025-06-26 05:50:46,512 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.02 done. INFO 2025-06-26 05:50:46,540 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004196/2004.196.02 done. INFO 2025-06-26 05:50:46,541 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:50:46,541 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.196.02/dorado_2004.196.02_processing.log /Volumes/AUVCTD/surveys/2004/netcdf