INFO 2025-06-26 05:50:08,919 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber
INFO 2025-06-26 05:50:08,919 process.py process_mission():434 [1] dorado_info[mission]["comment"] = SDP 10/6/04 - re-portaled 8/11/05 - ctdToUse = ctd1 
INFO 2025-06-26 05:50:08,919 process.py process_mission():449 [1] Processing AUVCTD mission 2004.170.02 by user docker_user on host 671049448ece
INFO 2025-06-26 05:50:08,919 process.py download_process():165 [1] Download and processing steps for 2004.170.02
INFO 2025-06-26 05:50:08,919 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004170/2004.170.02
INFO 2025-06-26 05:50:08,919 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004170/2004.170.02 to /data/auv_data/dorado/missionlogs/2004.170.02
INFO 2025-06-26 05:50:09,932 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.170.02
INFO 2025-06-26 05:50:09,932 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.02/ctdDriver.log (1246563 bytes)
INFO 2025-06-26 05:50:10,032 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.02/ctdDriver2.log (1246821 bytes)
INFO 2025-06-26 05:50:10,126 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.02/gps.log (7340 bytes)
INFO 2025-06-26 05:50:10,135 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.02/hydroscatlog.log (853874 bytes)
INFO 2025-06-26 05:50:10,240 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.02/navigation.log (2761987 bytes)
INFO 2025-06-26 05:50:10,457 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.02/isuslog.log (67573 bytes)
INFO 2025-06-26 05:50:10,468 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.02/parosci.log (854534 bytes)
INFO 2025-06-26 05:50:10,548 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.02/tailCone.log (855115 bytes)
INFO 2025-06-26 05:50:10,663 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.02/biolume.log (971452 bytes)
INFO 2025-06-26 05:50:10,762 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data
INFO 2025-06-26 05:50:10,818 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.89 seconds
WARNING 2025-06-26 05:50:10,818 process.py download_process():196 [1] No lopc.bin file for 2004.170.02
INFO 2025-06-26 05:50:10,818 process.py calibrate():227 [1] Calibration steps for 2004.170.02
INFO 2025-06-26 05:50:10,894 calibrate.py _nudge_pos():1680 [1] seg#   end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2025-06-26 05:50:10,896 calibrate.py _nudge_pos():1711 [1]                   -            -            -         0      0.00              -              -                             -
INFO 2025-06-26 05:50:11,562 calibrate.py _nudge_pos():1862 [1]   68:            -            -            -     17363     57.87              -              -
INFO 2025-06-26 05:50:11,563 calibrate.py _nudge_pos():1868 [1] Points in final series = 17697
WARNING 2025-06-26 05:50:11,581 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz
INFO 2025-06-26 05:50:11,790 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 05:50:11,940 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 20 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 05:50:12,052 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 20 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 05:50:12,054 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.170.02/ctd1.nc
INFO 2025-06-26 05:50:12,055 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN
INFO 2025-06-26 05:50:12,055 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))]
INFO 2025-06-26 05:50:12,055 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1
INFO 2025-06-26 05:50:12,191 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds
INFO 2025-06-26 05:50:12,299 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds
INFO 2025-06-26 05:50:12,301 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.170.02/ctd2.nc
INFO 2025-06-26 05:50:12,303 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN
INFO 2025-06-26 05:50:12,303 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))]
INFO 2025-06-26 05:50:12,303 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2
INFO 2025-06-26 05:50:12,314 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz
INFO 2025-06-26 05:50:12,500 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds
ERROR 2025-06-26 05:50:12,505 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']"
ERROR 2025-06-26 05:50:12,506 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.170.02
ERROR 2025-06-26 05:50:12,506 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.170.02
INFO 2025-06-26 05:50:12,523 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02_cal.nc
INFO 2025-06-26 05:50:12,574 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time
INFO 2025-06-26 05:50:12,578 process.py align():251 [1] Alignment steps for 2004.170.02
INFO 2025-06-26 05:50:12,603 align.py process_cal():139 [1] Processing dorado_2004.170.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.170.02
INFO 2025-06-26 05:50:12,612 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:50:12,615 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:50:12,635 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:50:12,637 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:50:12,657 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:50:12,659 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:50:12,671 align.py process_cal():161 [1] Skipping navigation_posx
INFO 2025-06-26 05:50:12,671 align.py process_cal():161 [1] Skipping navigation_posy
INFO 2025-06-26 05:50:12,679 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:50:12,681 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:50:12,700 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 05:50:12,703 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,722 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 05:50:12,724 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,742 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 05:50:12,744 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,761 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,763 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,781 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,783 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,801 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,803 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,821 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,823 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,845 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,848 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,873 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,875 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,893 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,895 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,912 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,915 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,932 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,934 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,952 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,954 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,972 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,974 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:12,993 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:12,995 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:13,016 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:13,019 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:13,043 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:13,045 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:13,064 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:13,066 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:13,085 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:13,087 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:13,106 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:50:13,108 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:50:13,130 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60
INFO 2025-06-26 05:50:13,147 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60
INFO 2025-06-26 05:50:13,164 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60
INFO 2025-06-26 05:50:13,183 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00
INFO 2025-06-26 05:50:13,201 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:50:13,218 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02_align.nc
INFO 2025-06-26 05:50:13,266 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time
INFO 2025-06-26 05:50:13,268 process.py resample():273 [1] Resampling steps for 2004.170.02
INFO 2025-06-26 05:50:13,269 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m
INFO 2025-06-26 05:50:13,291 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02_align.nc mission netCDF file
INFO 2025-06-26 05:50:13,295 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02_align.nc mission netCDF file
INFO 2025-06-26 05:50:13,296 resample.py get_mission_start_end():1145 [1] navigation: 2004-06-18T06:20:24.184021248 to 2004-06-18T07:19:23.381569664 (0 days 00:00:00.009999232 before mission_end)
INFO 2025-06-26 05:50:13,298 resample.py get_mission_start_end():1145 [1] hs2       : 2004-06-18T06:20:07.585158400 to 2004-06-18T07:19:23.141586048 (0 days 00:00:00.249982848 before mission_end)
INFO 2025-06-26 05:50:13,299 resample.py get_mission_start_end():1145 [1] ctd1      : 2004-06-18T06:20:24.154023424 to 2004-06-18T07:19:23.331572992 (0 days 00:00:00.059995904 before mission_end)
INFO 2025-06-26 05:50:13,300 resample.py get_mission_start_end():1145 [1] ctd2      : 2004-06-18T06:20:23.474069888 to 2004-06-18T07:19:23.391568896 (0 days 00:00:00 before mission_end)
INFO 2025-06-26 05:50:13,302 resample.py get_mission_start_end():1145 [1] isus      : 2004-06-18T06:21:18.710285952 to 2004-06-18T07:19:23.241579264 (0 days 00:00:00.149989632 before mission_end)
INFO 2025-06-26 05:50:13,303 resample.py get_mission_start_end():1145 [1] biolume   : 2004-06-18T06:20:02.685459840 to 2004-06-18T07:19:22.371604480 (0 days 00:00:01.019964416 before mission_end)
INFO 2025-06-26 05:50:13,304 resample.py get_mission_start_end():1145 [1] tailcone  : 2004-06-18T06:20:02.615498752 to 2004-06-18T07:19:23.171583872 (0 days 00:00:00.219985024 before mission_end)
INFO 2025-06-26 05:50:13,305 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02_align.nc mission netCDF file
INFO 2025-06-26 05:50:13,305 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter 
INFO 2025-06-26 05:50:13,367 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,380 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,393 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,405 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,417 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,429 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,440 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,452 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,463 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,473 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,484 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,494 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,505 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,516 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,527 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,539 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,551 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,564 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,576 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,588 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,600 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,612 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,622 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,631 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,639 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,649 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,662 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter
INFO 2025-06-26 05:50:13,775 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02_1S.nc
INFO 2025-06-26 05:50:14,510 create_products.py gulper_odv():401 [1] No gulper times found for 2004.170.02
INFO 2025-06-26 05:50:14,510 process.py archive():337 [1] Archiving steps for 2004.170.02
INFO 2025-06-26 05:50:14,510 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02, BASE_PATH = /data/auv_data
INFO 2025-06-26 05:50:14,510 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02 files to /Volumes/AUVCTD/surveys/2004/netcdf
INFO 2025-06-26 05:50:14,512 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.170.02_1S.nc
INFO 2025-06-26 05:50:14,521 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done.
INFO 2025-06-26 05:50:14,522 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.170.02_cal.nc
INFO 2025-06-26 05:50:14,542 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done.
INFO 2025-06-26 05:50:14,543 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.170.02_align.nc
INFO 2025-06-26 05:50:14,565 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done.
INFO 2025-06-26 05:50:14,576 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.02 done.
INFO 2025-06-26 05:50:14,586 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.02 done.
INFO 2025-06-26 05:50:14,590 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.02 done.
INFO 2025-06-26 05:50:14,597 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.02 done.
INFO 2025-06-26 05:50:14,611 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.02 done.
INFO 2025-06-26 05:50:14,615 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.02 done.
INFO 2025-06-26 05:50:14,623 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.02 done.
INFO 2025-06-26 05:50:14,631 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.02 done.
INFO 2025-06-26 05:50:14,647 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.02 done.
INFO 2025-06-26 05:50:14,647 archive.py copy_to_AUVTCD():116 [1] Archiving product files
INFO 2025-06-26 05:50:14,647 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.02/dorado_2004.170.02_processing.log /Volumes/AUVCTD/surveys/2004/netcdf