INFO 2025-06-26 05:49:57,697 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:49:57,697 process.py process_mission():434 [1] dorado_info[mission]["comment"] = SDP 10/6/04 - re-portaled 8/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:49:57,697 process.py process_mission():449 [1] Processing AUVCTD mission 2004.170.01 by user docker_user on host 671049448ece INFO 2025-06-26 05:49:57,697 process.py download_process():165 [1] Download and processing steps for 2004.170.01 INFO 2025-06-26 05:49:57,697 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004170/2004.170.01 INFO 2025-06-26 05:49:57,698 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004170/2004.170.01 to /data/auv_data/dorado/missionlogs/2004.170.01 INFO 2025-06-26 05:49:59,194 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.170.01 INFO 2025-06-26 05:49:59,194 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.01/ctdDriver.log (2662923 bytes) INFO 2025-06-26 05:49:59,389 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.01/ctdDriver2.log (2663357 bytes) INFO 2025-06-26 05:49:59,584 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.01/gps.log (21596 bytes) INFO 2025-06-26 05:49:59,594 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.01/hydroscatlog.log (1819274 bytes) INFO 2025-06-26 05:49:59,818 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.01/navigation.log (5899927 bytes) INFO 2025-06-26 05:50:00,282 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.01/isuslog.log (145333 bytes) INFO 2025-06-26 05:50:00,302 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.01/parosci.log (1819648 bytes) WARNING 2025-06-26 05:50:00,401 logs2netcdfs.py _read_data():216 [1] unpack requires a buffer of 8 bytes, b = b'X#' at record 37902, for pressure in file /data/auv_data/dorado/missionlogs/2004.170.01/parosci.log INFO 2025-06-26 05:50:00,402 logs2netcdfs.py _read_data():224 [1] bytes read = 1819654 file size = 1819648 INFO 2025-06-26 05:50:00,402 logs2netcdfs.py _read_data():229 [1] Tried to read 8 bytes, but only 6 bytes remaining INFO 2025-06-26 05:50:00,402 logs2netcdfs.py _read_data():235 [1] Successfully unpacked 37902 records WARNING 2025-06-26 05:50:00,414 logs2netcdfs.py _create_variable():536 [1] temp_period: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (37903,) and arg 1 with shape (37902,). INFO 2025-06-26 05:50:00,414 logs2netcdfs.py _create_variable():537 [1] len(data) (37902) does not match shape of temp_period.shape[0] (37903) WARNING 2025-06-26 05:50:00,414 logs2netcdfs.py _create_variable():544 [1] temp_period data is short by one, appending the last value: 5.871729 WARNING 2025-06-26 05:50:00,417 logs2netcdfs.py _create_variable():536 [1] pres_period: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (37903,) and arg 1 with shape (37902,). INFO 2025-06-26 05:50:00,417 logs2netcdfs.py _create_variable():537 [1] len(data) (37902) does not match shape of pres_period.shape[0] (37903) WARNING 2025-06-26 05:50:00,417 logs2netcdfs.py _create_variable():544 [1] pres_period data is short by one, appending the last value: 30.14723 INFO 2025-06-26 05:50:00,470 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.01/tailCone.log (1820299 bytes) INFO 2025-06-26 05:50:00,717 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.01/biolume.log (2066252 bytes) INFO 2025-06-26 05:50:00,940 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:50:01,068 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.87 seconds WARNING 2025-06-26 05:50:01,069 process.py download_process():196 [1] No lopc.bin file for 2004.170.01 INFO 2025-06-26 05:50:01,069 process.py calibrate():227 [1] Calibration steps for 2004.170.01 INFO 2025-06-26 05:50:01,175 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:50:01,177 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:50:02,734 calibrate.py _nudge_pos():1806 [1] 183: 0.010 -0.0017401 0.0007094 10770 35.90 -7.183 3.662 2004-06-18T04:48:48.820479360 INFO 2025-06-26 05:50:03,196 calibrate.py _nudge_pos():1806 [1] 231: 0.010 -0.0015543 0.0006031 11825 39.41 -5.846 2.835 2004-06-18T05:29:00.825245824 INFO 2025-06-26 05:50:03,684 calibrate.py _nudge_pos():1806 [1] 284: 0.020 -0.0000641 0.0008849 13900 46.33 -0.205 3.539 2004-06-18T06:16:12.821240960 INFO 2025-06-26 05:50:03,724 calibrate.py _nudge_pos():1862 [1] 267: - - - 5 0.01 - - INFO 2025-06-26 05:50:03,724 calibrate.py _nudge_pos():1868 [1] Points in final series = 37812 WARNING 2025-06-26 05:50:03,759 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:50:04,041 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 3 seconds INFO 2025-06-26 05:50:04,326 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 20 seconds, d_end_time_diff: 3 seconds INFO 2025-06-26 05:50:04,549 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 20 seconds, d_end_time_diff: 3 seconds INFO 2025-06-26 05:50:04,550 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.170.01/ctd1.nc INFO 2025-06-26 05:50:04,551 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:50:04,552 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:50:04,552 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:50:04,821 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 2 seconds INFO 2025-06-26 05:50:05,054 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 2 seconds INFO 2025-06-26 05:50:05,056 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.170.01/ctd2.nc INFO 2025-06-26 05:50:05,057 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:50:05,057 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:50:05,057 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:50:05,073 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:50:05,399 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [287640 287641 287642 287643 287644 287645 287646 287647 287648 287649 287650 287651 287652 287653 287654 287655 287656 287657 287658 287659 287660 287661 287662 287663 287664 287665 287666 287667 287668 287669] INFO 2025-06-26 05:50:05,466 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: 2 seconds ERROR 2025-06-26 05:50:05,472 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:50:05,472 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.170.01 ERROR 2025-06-26 05:50:05,472 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.170.01 INFO 2025-06-26 05:50:05,505 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01_cal.nc INFO 2025-06-26 05:50:05,566 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:50:05,570 process.py align():251 [1] Alignment steps for 2004.170.01 INFO 2025-06-26 05:50:05,596 align.py process_cal():139 [1] Processing dorado_2004.170.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.170.01 INFO 2025-06-26 05:50:05,611 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:05,613 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:05,646 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:05,648 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:05,680 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:05,682 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:05,701 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:50:05,701 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:50:05,714 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:05,717 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:05,748 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:05,751 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:05,780 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:05,782 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:05,811 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:05,813 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:05,842 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:05,845 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:05,874 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:05,877 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:05,906 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:05,909 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:05,939 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:05,942 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:05,974 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:05,977 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,008 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,011 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,041 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,044 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,073 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,076 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,105 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,107 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,137 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,139 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,169 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,172 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,202 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,205 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,234 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,237 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,266 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,269 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,298 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,301 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,331 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,334 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,365 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:06,367 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:06,402 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:06,427 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:06,451 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:06,476 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:50:06,503 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:06,527 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01_align.nc INFO 2025-06-26 05:50:06,584 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:50:06,586 process.py resample():273 [1] Resampling steps for 2004.170.01 INFO 2025-06-26 05:50:06,587 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:50:06,611 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01_align.nc mission netCDF file INFO 2025-06-26 05:50:06,616 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01_align.nc mission netCDF file INFO 2025-06-26 05:50:06,617 resample.py get_mission_start_end():1145 [1] navigation: 2004-06-18T04:10:14.629012352 to 2004-06-18T06:16:16.820966784 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 05:50:06,619 resample.py get_mission_start_end():1145 [1] hs2 : 2004-06-18T04:09:56.710239872 to 2004-06-18T06:16:16.820966784 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 05:50:06,620 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-06-18T04:10:13.999055616 to 2004-06-18T06:16:16.830966016 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:50:06,622 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-06-18T04:10:12.589152128 to 2004-06-18T06:16:16.660977792 (0 days 00:00:00.169988224 before mission_end) INFO 2025-06-26 05:50:06,623 resample.py get_mission_start_end():1145 [1] isus : 2004-06-18T04:11:09.255270272 to 2004-06-18T06:16:16.560984576 (0 days 00:00:00.269981440 before mission_end) INFO 2025-06-26 05:50:06,624 resample.py get_mission_start_end():1145 [1] biolume : 2004-06-18T04:09:51.890535808 to 2004-06-18T06:16:16.250971520 (0 days 00:00:00.579994496 before mission_end) INFO 2025-06-26 05:50:06,625 resample.py get_mission_start_end():1145 [1] tailcone : 2004-06-18T04:09:54.150415360 to 2004-06-18T06:16:16.700974976 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 05:50:06,626 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01_align.nc mission netCDF file INFO 2025-06-26 05:50:06,627 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,728 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,749 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,768 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,787 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,805 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,823 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,840 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,857 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,873 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,888 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,903 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,919 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,934 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,950 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,965 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,981 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:06,998 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:07,016 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:07,033 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:07,050 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:07,067 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:07,084 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:07,095 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:07,105 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:07,114 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:07,125 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:07,144 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:07,279 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01_1S.nc INFO 2025-06-26 05:50:08,697 create_products.py gulper_odv():401 [1] No gulper times found for 2004.170.01 INFO 2025-06-26 05:50:08,697 process.py archive():337 [1] Archiving steps for 2004.170.01 INFO 2025-06-26 05:50:08,698 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01, BASE_PATH = /data/auv_data INFO 2025-06-26 05:50:08,698 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:50:08,699 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.170.01_1S.nc INFO 2025-06-26 05:50:08,711 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:08,712 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.170.01_cal.nc INFO 2025-06-26 05:50:08,748 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:08,749 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.170.01_align.nc INFO 2025-06-26 05:50:08,784 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:08,799 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.01 done. INFO 2025-06-26 05:50:08,812 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.01 done. INFO 2025-06-26 05:50:08,816 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.01 done. INFO 2025-06-26 05:50:08,827 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.01 done. INFO 2025-06-26 05:50:08,849 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.01 done. INFO 2025-06-26 05:50:08,855 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.01 done. INFO 2025-06-26 05:50:08,865 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.01 done. INFO 2025-06-26 05:50:08,877 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.01 done. INFO 2025-06-26 05:50:08,902 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.01 done. INFO 2025-06-26 05:50:08,903 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:50:08,903 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.01/dorado_2004.170.01_processing.log /Volumes/AUVCTD/surveys/2004/netcdf