INFO 2025-06-26 05:48:38,065 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:48:38,065 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 8/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:48:38,065 process.py process_mission():449 [1] Processing AUVCTD mission 2004.112.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:48:38,065 process.py download_process():165 [1] Download and processing steps for 2004.112.02 INFO 2025-06-26 05:48:38,065 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004112/2004.112.02 INFO 2025-06-26 05:48:38,065 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004112/2004.112.02 to /data/auv_data/dorado/missionlogs/2004.112.02 INFO 2025-06-26 05:48:40,022 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.112.02 INFO 2025-06-26 05:48:40,023 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.112.02/ctdDriver.log (6206419 bytes) INFO 2025-06-26 05:48:40,483 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.112.02/ctdDriver2.log (6206501 bytes) INFO 2025-06-26 05:48:40,939 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.112.02/gps.log (43484 bytes) INFO 2025-06-26 05:48:40,952 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.112.02/hydroscatlog.log (4233974 bytes) INFO 2025-06-26 05:48:41,451 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.112.02/navigation.log (12340485 bytes) INFO 2025-06-26 05:48:42,369 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.112.02/isuslog.log (341845 bytes) INFO 2025-06-26 05:48:42,406 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.112.02/parosci.log (4235990 bytes) INFO 2025-06-26 05:48:42,765 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.112.02/tailCone.log (4235707 bytes) INFO 2025-06-26 05:48:43,282 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.26 seconds WARNING 2025-06-26 05:48:43,282 process.py download_process():196 [1] No lopc.bin file for 2004.112.02 INFO 2025-06-26 05:48:43,282 process.py calibrate():227 [1] Calibration steps for 2004.112.02 INFO 2025-06-26 05:48:43,415 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2004.112.02 INFO 2025-06-26 05:48:43,435 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:48:43,437 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:48:44,940 calibrate.py _nudge_pos():1806 [1] 178: 0.200 0.0048314 0.0002315 11295 37.65 19.060 1.139 2004-04-21T17:27:42.380228224 INFO 2025-06-26 05:48:45,399 calibrate.py _nudge_pos():1806 [1] 224: 0.010 -0.0000191 -0.0000040 60 0.20 -14.441 -3.739 2004-04-21T17:28:39.576310144 INFO 2025-06-26 05:48:45,484 calibrate.py _nudge_pos():1806 [1] 233: 0.010 0.0038059 0.0002050 11495 38.31 14.751 0.991 2004-04-21T18:07:06.578269696 INFO 2025-06-26 05:48:46,106 calibrate.py _nudge_pos():1806 [1] 299: 0.010 0.0023968 0.0010848 11435 38.11 9.338 5.274 2004-04-21T18:46:18.577146496 INFO 2025-06-26 05:48:46,230 calibrate.py _nudge_pos():1806 [1] 312: 0.200 0.0000194 -0.0000184 64 0.21 13.692 -16.195 2004-04-21T18:46:43.385447296 INFO 2025-06-26 05:48:46,574 calibrate.py _nudge_pos():1806 [1] 348: 0.010 0.0000089 -0.0000129 15 0.05 28.394 -51.317 2004-04-21T18:47:21.582830464 INFO 2025-06-26 05:48:46,734 calibrate.py _nudge_pos():1806 [1] 365: 0.010 0.0018260 0.0014421 11395 37.98 7.138 7.036 2004-04-21T19:25:36.575612800 INFO 2025-06-26 05:48:47,212 calibrate.py _nudge_pos():1806 [1] 415: 0.010 0.0016780 0.0014010 11335 37.78 6.594 6.871 2004-04-21T20:04:12.576955776 INFO 2025-06-26 05:48:47,681 calibrate.py _nudge_pos():1806 [1] 462: 0.020 0.0009796 0.0011316 11500 38.33 3.794 5.471 2004-04-21T20:43:18.576243840 INFO 2025-06-26 05:48:48,191 calibrate.py _nudge_pos():1806 [1] 514: 0.010 0.0003212 0.0016626 10995 36.65 1.301 8.407 2004-04-21T21:20:48.582107776 INFO 2025-06-26 05:48:48,539 calibrate.py _nudge_pos():1806 [1] 550: 0.020 -0.0000191 0.0000135 50 0.16 -17.350 15.311 2004-04-21T21:21:33.579025280 INFO 2025-06-26 05:48:48,794 calibrate.py _nudge_pos():1806 [1] 576: 0.020 -0.0000907 0.0005575 5710 19.03 -0.707 5.428 2004-04-21T21:41:00.579080320 INFO 2025-06-26 05:48:48,951 calibrate.py _nudge_pos():1862 [1] 570: - - - 4 0.01 - - INFO 2025-06-26 05:48:48,951 calibrate.py _nudge_pos():1868 [1] Points in final series = 87984 WARNING 2025-06-26 05:48:49,024 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:48:49,661 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:48:50,310 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:48:50,832 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:48:50,835 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.112.02/ctd1.nc INFO 2025-06-26 05:48:50,836 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:48:50,836 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:48:50,836 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:48:51,459 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:48:51,978 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:48:51,980 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.112.02/ctd2.nc INFO 2025-06-26 05:48:51,982 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:48:51,982 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:48:51,982 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:48:51,996 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.112.02 ERROR 2025-06-26 05:48:51,997 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.112.02 ERROR 2025-06-26 05:48:51,997 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.112.02 INFO 2025-06-26 05:48:52,068 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02_cal.nc INFO 2025-06-26 05:48:52,145 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:48:52,148 process.py align():251 [1] Alignment steps for 2004.112.02 INFO 2025-06-26 05:48:52,172 align.py process_cal():139 [1] Processing dorado_2004.112.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.112.02 INFO 2025-06-26 05:48:52,199 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:52,203 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:52,269 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:52,273 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:52,337 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:52,341 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:52,380 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:48:52,380 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:48:52,406 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:52,411 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:52,475 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:52,479 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:52,536 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:52,540 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:52,596 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:52,600 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:52,656 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:52,660 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:52,716 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:52,720 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:52,776 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:52,780 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:52,837 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:52,841 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:52,897 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:52,901 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:52,959 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:52,963 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,019 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:53,023 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,079 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:53,083 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,139 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:53,143 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,199 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:53,203 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,260 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:53,264 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,321 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:53,325 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,382 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:53,386 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,443 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:53,447 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,503 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:53,507 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,566 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:53,570 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,626 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.112.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:53,630 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:53,691 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:53,731 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:53,771 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:53,813 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:53,857 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02_align.nc INFO 2025-06-26 05:48:53,926 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:48:53,928 process.py resample():273 [1] Resampling steps for 2004.112.02 INFO 2025-06-26 05:48:53,929 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:48:53,951 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02_align.nc mission netCDF file INFO 2025-06-26 05:48:53,956 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02_align.nc mission netCDF file INFO 2025-06-26 05:48:53,958 resample.py get_mission_start_end():1145 [1] navigation: 2004-04-21T16:47:28.985557120 to 2004-04-21T21:41:16.377998080 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:48:53,959 resample.py get_mission_start_end():1145 [1] hs2 : 2004-04-21T16:47:11.026787328 to 2004-04-21T21:41:16.298003456 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 05:48:53,961 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-04-21T16:47:26.895700224 to 2004-04-21T21:41:16.298003456 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 05:48:53,963 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-04-21T16:47:26.675715456 to 2004-04-21T21:41:16.298003456 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 05:48:53,965 resample.py get_mission_start_end():1145 [1] isus : 2004-04-21T16:48:23.631813504 to 2004-04-21T21:41:15.528056192 (0 days 00:00:00.849941888 before mission_end) INFO 2025-06-26 05:48:53,967 resample.py get_mission_start_end():1145 [1] tailcone : 2004-04-21T16:47:08.466962816 to 2004-04-21T21:41:16.328001536 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 05:48:53,968 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02_align.nc mission netCDF file INFO 2025-06-26 05:48:53,968 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,169 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,204 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,238 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,271 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,301 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,331 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,361 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,391 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,418 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,444 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,471 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,497 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,524 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,550 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,576 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,603 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,631 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,659 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,687 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,715 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,742 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,769 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,783 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,796 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,808 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:54,840 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:55,029 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02_1S.nc INFO 2025-06-26 05:48:56,032 create_products.py gulper_odv():401 [1] No gulper times found for 2004.112.02 INFO 2025-06-26 05:48:56,033 process.py archive():337 [1] Archiving steps for 2004.112.02 INFO 2025-06-26 05:48:56,033 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:48:56,033 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:48:56,034 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.112.02_1S.nc INFO 2025-06-26 05:48:56,051 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:56,051 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.112.02_cal.nc INFO 2025-06-26 05:48:56,122 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:56,123 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.112.02_align.nc INFO 2025-06-26 05:48:56,198 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:56,223 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004112/2004.112.02 done. INFO 2025-06-26 05:48:56,246 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004112/2004.112.02 done. INFO 2025-06-26 05:48:56,251 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004112/2004.112.02 done. INFO 2025-06-26 05:48:56,269 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004112/2004.112.02 done. INFO 2025-06-26 05:48:56,307 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004112/2004.112.02 done. INFO 2025-06-26 05:48:56,314 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004112/2004.112.02 done. INFO 2025-06-26 05:48:56,331 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004112/2004.112.02 done. INFO 2025-06-26 05:48:56,351 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004112/2004.112.02 done. INFO 2025-06-26 05:48:56,351 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:48:56,351 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.112.02/dorado_2004.112.02_processing.log /Volumes/AUVCTD/surveys/2004/netcdf