INFO 2025-06-26 05:48:20,657 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:48:20,657 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 8/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:48:20,657 process.py process_mission():449 [1] Processing AUVCTD mission 2004.111.04 by user docker_user on host 671049448ece INFO 2025-06-26 05:48:20,657 process.py download_process():165 [1] Download and processing steps for 2004.111.04 INFO 2025-06-26 05:48:20,657 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004111/2004.111.04 INFO 2025-06-26 05:48:20,657 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004111/2004.111.04 to /data/auv_data/dorado/missionlogs/2004.111.04 INFO 2025-06-26 05:48:22,423 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.111.04 INFO 2025-06-26 05:48:22,423 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.111.04/ctdDriver.log (5789739 bytes) INFO 2025-06-26 05:48:22,859 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.111.04/ctdDriver2.log (5789821 bytes) INFO 2025-06-26 05:48:23,274 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.111.04/gps.log (41180 bytes) INFO 2025-06-26 05:48:23,286 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.111.04/hydroscatlog.log (3950174 bytes) INFO 2025-06-26 05:48:23,749 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.111.04/navigation.log (11511965 bytes) INFO 2025-06-26 05:48:24,634 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.111.04/isuslog.log (318773 bytes) INFO 2025-06-26 05:48:24,668 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.111.04/parosci.log (3951926 bytes) INFO 2025-06-26 05:48:25,014 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.111.04/tailCone.log (3951739 bytes) INFO 2025-06-26 05:48:25,500 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.08 seconds WARNING 2025-06-26 05:48:25,501 process.py download_process():196 [1] No lopc.bin file for 2004.111.04 INFO 2025-06-26 05:48:25,501 process.py calibrate():227 [1] Calibration steps for 2004.111.04 INFO 2025-06-26 05:48:25,628 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2004.111.04 INFO 2025-06-26 05:48:25,648 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:48:25,649 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:48:27,064 calibrate.py _nudge_pos():1806 [1] 165: 0.150 0.0000089 -0.0000086 25 0.08 16.450 -19.840 2004-04-20T17:09:46.528590976 INFO 2025-06-26 05:48:27,194 calibrate.py _nudge_pos():1806 [1] 179: 0.160 0.0059792 -0.0003738 11495 38.31 23.178 -1.808 2004-04-20T17:48:18.520208640 INFO 2025-06-26 05:48:27,641 calibrate.py _nudge_pos():1806 [1] 226: 0.170 0.0036505 0.0004146 11410 38.03 14.255 2.020 2004-04-20T18:27:06.520729600 INFO 2025-06-26 05:48:28,238 calibrate.py _nudge_pos():1806 [1] 289: 0.170 0.0023391 0.0014654 11390 37.96 9.149 7.153 2004-04-20T19:06:06.520428672 INFO 2025-06-26 05:48:28,889 calibrate.py _nudge_pos():1806 [1] 357: 0.170 0.0022555 0.0016845 11365 37.88 8.840 8.240 2004-04-20T19:45:06.520127744 INFO 2025-06-26 05:48:29,306 calibrate.py _nudge_pos():1806 [1] 400: 0.170 0.0017116 0.0016638 11550 38.50 6.600 8.009 2004-04-20T20:24:18.519004800 INFO 2025-06-26 05:48:29,385 calibrate.py _nudge_pos():1806 [1] 408: 0.160 0.0000046 -0.0000377 30 0.10 7.039 -72.192 2004-04-20T20:24:31.528113664 INFO 2025-06-26 05:48:29,752 calibrate.py _nudge_pos():1806 [1] 446: 0.160 0.0000254 -0.0000153 25 0.08 47.187 -35.393 2004-04-20T20:25:13.525236608 INFO 2025-06-26 05:48:29,790 calibrate.py _nudge_pos():1806 [1] 450: 0.170 0.0001069 -0.0000194 20 0.06 250.645 -56.647 2004-04-20T20:25:20.524757120 INFO 2025-06-26 05:48:29,906 calibrate.py _nudge_pos():1806 [1] 462: 0.160 0.0016318 0.0021577 11365 37.88 6.395 10.555 2004-04-20T21:03:24.528292224 INFO 2025-06-26 05:48:29,917 calibrate.py _nudge_pos():1806 [1] 463: 0.160 0.0015897 0.0021603 40 0.13 1815.273 3079.407 2004-04-20T21:03:32.527744000 INFO 2025-06-26 05:48:30,355 calibrate.py _nudge_pos():1806 [1] 508: 0.170 0.0000239 0.0000005 15 0.05 76.021 2.148 2004-04-20T21:04:19.524524672 INFO 2025-06-26 05:48:30,572 calibrate.py _nudge_pos():1806 [1] 530: 0.170 0.0009906 0.0027564 10870 36.23 4.058 14.098 2004-04-20T21:40:54.524156800 INFO 2025-06-26 05:48:30,859 calibrate.py _nudge_pos():1862 [1] 538: - - - 1 0.00 - - INFO 2025-06-26 05:48:30,859 calibrate.py _nudge_pos():1868 [1] Points in final series = 82220 WARNING 2025-06-26 05:48:30,927 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:48:31,534 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:48:32,209 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:48:32,704 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:48:32,706 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.111.04/ctd1.nc INFO 2025-06-26 05:48:32,707 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:48:32,707 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:48:32,707 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:48:33,282 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:48:33,769 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:48:33,771 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.111.04/ctd2.nc INFO 2025-06-26 05:48:33,772 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:48:33,773 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:48:33,773 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:48:33,787 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.111.04 ERROR 2025-06-26 05:48:33,787 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.111.04 ERROR 2025-06-26 05:48:33,787 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.111.04 INFO 2025-06-26 05:48:33,853 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04_cal.nc INFO 2025-06-26 05:48:33,928 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:48:33,931 process.py align():251 [1] Alignment steps for 2004.111.04 INFO 2025-06-26 05:48:33,957 align.py process_cal():139 [1] Processing dorado_2004.111.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.111.04 INFO 2025-06-26 05:48:33,983 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:33,986 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:34,049 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:34,053 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:34,113 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:34,117 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:34,153 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:48:34,153 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:48:34,178 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:34,182 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:34,241 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:34,245 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,299 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:34,303 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,358 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:34,361 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,415 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:34,419 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,473 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:34,478 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,531 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:34,535 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,589 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:34,593 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,646 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:34,650 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,703 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:34,707 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,762 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:34,766 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,819 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:34,823 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,876 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:34,880 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,933 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:34,936 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:34,990 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:34,994 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:35,052 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:35,057 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:35,110 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:35,115 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:35,171 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:35,176 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:35,230 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:35,234 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:35,287 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:35,291 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:35,344 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.111.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:35,348 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:35,407 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:35,445 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:35,484 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:35,524 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:35,566 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04_align.nc INFO 2025-06-26 05:48:35,636 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:48:35,638 process.py resample():273 [1] Resampling steps for 2004.111.04 INFO 2025-06-26 05:48:35,639 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:48:35,662 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04_align.nc mission netCDF file INFO 2025-06-26 05:48:35,667 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04_align.nc mission netCDF file INFO 2025-06-26 05:48:35,669 resample.py get_mission_start_end():1145 [1] navigation: 2004-04-20T17:07:20.128619904 to 2004-04-20T21:41:23.922142976 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:48:35,671 resample.py get_mission_start_end():1145 [1] hs2 : 2004-04-20T17:07:02.079856384 to 2004-04-20T21:41:23.822149760 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 05:48:35,672 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-04-20T17:07:17.928770560 to 2004-04-20T21:41:23.802151168 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 05:48:35,674 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-04-20T17:07:18.048762368 to 2004-04-20T21:41:23.902144256 (0 days 00:00:00.019998720 before mission_end) INFO 2025-06-26 05:48:35,675 resample.py get_mission_start_end():1145 [1] isus : 2004-04-20T17:08:14.114921600 to 2004-04-20T21:41:23.502171776 (0 days 00:00:00.419971200 before mission_end) INFO 2025-06-26 05:48:35,677 resample.py get_mission_start_end():1145 [1] tailcone : 2004-04-20T17:06:59.650022784 to 2004-04-20T21:41:23.882145664 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 05:48:35,678 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04_align.nc mission netCDF file INFO 2025-06-26 05:48:35,678 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:35,868 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:35,902 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:35,935 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:35,969 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,000 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,031 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,061 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,090 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,118 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,145 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,171 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,199 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,226 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,253 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,281 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,310 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,342 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,371 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,400 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,428 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,456 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,484 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,498 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,512 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,525 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,557 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:36,743 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04_1S.nc INFO 2025-06-26 05:48:37,735 create_products.py gulper_odv():401 [1] No gulper times found for 2004.111.04 INFO 2025-06-26 05:48:37,736 process.py archive():337 [1] Archiving steps for 2004.111.04 INFO 2025-06-26 05:48:37,736 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04, BASE_PATH = /data/auv_data INFO 2025-06-26 05:48:37,737 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:48:37,738 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.111.04_1S.nc INFO 2025-06-26 05:48:37,755 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:37,756 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.111.04_cal.nc INFO 2025-06-26 05:48:37,826 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:37,828 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.111.04_align.nc INFO 2025-06-26 05:48:37,897 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:37,921 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004111/2004.111.04 done. INFO 2025-06-26 05:48:37,943 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004111/2004.111.04 done. INFO 2025-06-26 05:48:37,947 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004111/2004.111.04 done. INFO 2025-06-26 05:48:37,963 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004111/2004.111.04 done. INFO 2025-06-26 05:48:37,999 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004111/2004.111.04 done. INFO 2025-06-26 05:48:38,005 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004111/2004.111.04 done. INFO 2025-06-26 05:48:38,021 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004111/2004.111.04 done. INFO 2025-06-26 05:48:38,040 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004111/2004.111.04 done. INFO 2025-06-26 05:48:38,041 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:48:38,041 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.111.04/dorado_2004.111.04_processing.log /Volumes/AUVCTD/surveys/2004/netcdf