INFO 2025-06-26 05:48:06,049 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:48:06,049 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 8/10/05 - ctdToUse = ctd1 INFO 2025-06-26 05:48:06,049 process.py process_mission():449 [1] Processing BIOLUME mission 2004.096.06 by user docker_user on host 671049448ece INFO 2025-06-26 05:48:06,049 process.py download_process():165 [1] Download and processing steps for 2004.096.06 INFO 2025-06-26 05:48:06,050 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004096/2004.096.06 INFO 2025-06-26 05:48:06,050 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004096/2004.096.06 to /data/auv_data/dorado/missionlogs/2004.096.06 INFO 2025-06-26 05:48:08,030 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.096.06 INFO 2025-06-26 05:48:08,030 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.06/ctdDriver.log (4172915 bytes) INFO 2025-06-26 05:48:08,332 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.06/ctdDriver2.log (4172821 bytes) INFO 2025-06-26 05:48:08,631 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.06/gps.log (30452 bytes) INFO 2025-06-26 05:48:08,642 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.06/hydroscatlog.log (2848034 bytes) INFO 2025-06-26 05:48:08,983 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.06/navigation.log (8296445 bytes) INFO 2025-06-26 05:48:09,600 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.06/isuslog.log (229493 bytes) INFO 2025-06-26 05:48:09,626 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.06/parosci.log (2849510 bytes) INFO 2025-06-26 05:48:09,861 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.06/tailCone.log (2849467 bytes) INFO 2025-06-26 05:48:10,204 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.06/biolume.log (3232588 bytes) INFO 2025-06-26 05:48:10,524 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:48:10,694 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.66 seconds WARNING 2025-06-26 05:48:10,694 process.py download_process():196 [1] No lopc.bin file for 2004.096.06 INFO 2025-06-26 05:48:10,694 process.py calibrate():227 [1] Calibration steps for 2004.096.06 INFO 2025-06-26 05:48:10,812 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2004.096.06 INFO 2025-06-26 05:48:10,828 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:48:10,830 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:48:11,684 calibrate.py _nudge_pos():1806 [1] 110: 0.140 -0.0000167 -0.0000158 85 0.28 -8.856 -10.445 2004-04-05T06:40:32.480125440 INFO 2025-06-26 05:48:12,141 calibrate.py _nudge_pos():1806 [1] 159: 0.130 -0.0035869 0.0025426 10995 36.65 -14.557 12.856 2004-04-05T07:17:59.486194816 INFO 2025-06-26 05:48:12,663 calibrate.py _nudge_pos():1806 [1] 215: 0.140 -0.0036263 0.0016377 13735 45.78 -11.777 6.629 2004-04-05T08:04:41.484244864 INFO 2025-06-26 05:48:13,203 calibrate.py _nudge_pos():1806 [1] 273: 0.140 -0.0035827 -0.0013909 13545 45.15 -11.795 -5.709 2004-04-05T08:50:47.484760704 INFO 2025-06-26 05:48:13,346 calibrate.py _nudge_pos():1806 [1] 288: 0.140 -0.0000254 -0.0000423 15 0.05 -80.917 -168.049 2004-04-05T08:51:04.483596288 INFO 2025-06-26 05:48:13,682 calibrate.py _nudge_pos():1806 [1] 324: 0.140 -0.0025770 -0.0021686 13505 45.01 -8.507 -8.927 2004-04-05T09:36:41.486098816 INFO 2025-06-26 05:48:14,104 calibrate.py _nudge_pos():1806 [1] 369: 0.150 -0.0000378 -0.0000534 15 0.05 -120.456 -212.204 2004-04-05T09:37:28.482879360 INFO 2025-06-26 05:48:14,310 calibrate.py _nudge_pos():1806 [1] 391: 0.140 -0.0010755 -0.0007432 5450 18.16 -8.797 -7.582 2004-04-05T09:55:59.486770432 INFO 2025-06-26 05:48:14,495 calibrate.py _nudge_pos():1862 [1] 389: - - - 2 0.00 - - INFO 2025-06-26 05:48:14,495 calibrate.py _nudge_pos():1868 [1] Points in final series = 59252 WARNING 2025-06-26 05:48:14,544 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:48:14,628 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 1 of 47452 INFO 2025-06-26 05:48:14,980 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:48:15,482 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:48:15,830 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:48:15,832 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.096.06/ctd1.nc INFO 2025-06-26 05:48:15,833 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:48:15,834 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:48:15,834 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:48:16,246 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:48:16,607 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:48:16,609 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.096.06/ctd2.nc INFO 2025-06-26 05:48:16,610 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:48:16,611 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:48:16,611 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:48:16,632 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:48:17,240 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:48:17,246 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:48:17,247 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.096.06 ERROR 2025-06-26 05:48:17,247 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.096.06 INFO 2025-06-26 05:48:17,295 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06_cal.nc INFO 2025-06-26 05:48:17,362 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:48:17,366 process.py align():251 [1] Alignment steps for 2004.096.06 INFO 2025-06-26 05:48:17,392 align.py process_cal():139 [1] Processing dorado_2004.096.06_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.096.06 INFO 2025-06-26 05:48:17,411 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:17,414 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:17,459 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:17,463 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:17,509 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:17,512 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:17,540 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:48:17,540 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:48:17,558 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:17,562 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:17,605 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:17,608 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:17,648 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:17,651 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:17,692 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:17,695 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:17,735 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:17,739 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:17,780 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:17,783 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:17,822 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:17,825 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:17,865 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:17,868 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:17,909 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:17,912 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:17,951 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:17,954 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:17,994 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:17,997 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:18,038 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:18,041 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:18,081 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:18,084 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:18,124 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:18,127 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:18,167 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:18,170 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:18,212 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:18,215 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:18,257 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:18,260 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:18,300 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:18,304 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:18,345 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:18,348 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:18,389 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:18,392 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:18,433 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:18,435 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:18,480 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:18,510 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:18,543 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:18,576 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:48:18,610 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:18,643 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06_align.nc INFO 2025-06-26 05:48:18,708 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:48:18,710 process.py resample():273 [1] Resampling steps for 2004.096.06 INFO 2025-06-26 05:48:18,711 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:48:18,734 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06_align.nc mission netCDF file INFO 2025-06-26 05:48:18,739 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06_align.nc mission netCDF file INFO 2025-06-26 05:48:18,741 resample.py get_mission_start_end():1145 [1] navigation: 2004-04-05T06:38:48.687235584 to 2004-04-05T09:56:18.885441536 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 05:48:18,742 resample.py get_mission_start_end():1145 [1] hs2 : 2004-04-05T06:38:30.638472064 to 2004-04-05T09:56:18.825445632 (0 days 00:00:00.199986176 before mission_end) INFO 2025-06-26 05:48:18,744 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-04-05T06:38:46.547382400 to 2004-04-05T09:56:19.025431808 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:48:18,745 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-04-05T06:38:46.627376768 to 2004-04-05T09:56:18.845444224 (0 days 00:00:00.179987584 before mission_end) INFO 2025-06-26 05:48:18,746 resample.py get_mission_start_end():1145 [1] isus : 2004-04-05T06:39:42.853524864 to 2004-04-05T09:56:18.825445632 (0 days 00:00:00.199986176 before mission_end) INFO 2025-06-26 05:48:18,748 resample.py get_mission_start_end():1145 [1] biolume : 2004-04-05T06:38:25.688776960 to 2004-04-05T09:56:17.665490816 (0 days 00:00:01.359940992 before mission_end) INFO 2025-06-26 05:48:18,749 resample.py get_mission_start_end():1145 [1] tailcone : 2004-04-05T06:38:27.508686592 to 2004-04-05T09:56:18.935438208 (0 days 00:00:00.089993600 before mission_end) INFO 2025-06-26 05:48:18,750 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06_align.nc mission netCDF file INFO 2025-06-26 05:48:18,750 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:18,890 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:18,916 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:18,941 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:18,966 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:18,990 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,013 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,035 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,057 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,077 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,097 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,117 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,137 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,157 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,177 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,198 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,219 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,241 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,263 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,283 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,305 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,327 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,348 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,360 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,372 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,382 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,395 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,420 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:19,578 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06_1S.nc INFO 2025-06-26 05:48:20,351 create_products.py gulper_odv():401 [1] No gulper times found for 2004.096.06 INFO 2025-06-26 05:48:20,351 process.py archive():337 [1] Archiving steps for 2004.096.06 INFO 2025-06-26 05:48:20,351 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06, BASE_PATH = /data/auv_data INFO 2025-06-26 05:48:20,351 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:48:20,353 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.096.06_1S.nc INFO 2025-06-26 05:48:20,367 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:20,368 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.096.06_cal.nc INFO 2025-06-26 05:48:20,424 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:20,425 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.096.06_align.nc INFO 2025-06-26 05:48:20,481 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:20,502 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.06 done. INFO 2025-06-26 05:48:20,519 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.06 done. INFO 2025-06-26 05:48:20,524 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.06 done. INFO 2025-06-26 05:48:20,539 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.06 done. INFO 2025-06-26 05:48:20,568 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.06 done. INFO 2025-06-26 05:48:20,573 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.06 done. INFO 2025-06-26 05:48:20,586 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.06 done. INFO 2025-06-26 05:48:20,601 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.06 done. INFO 2025-06-26 05:48:20,636 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.06 done. INFO 2025-06-26 05:48:20,637 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:48:20,637 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.06/dorado_2004.096.06_processing.log /Volumes/AUVCTD/surveys/2004/netcdf