INFO 2025-06-26 05:48:00,145 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:48:00,145 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 8/10/05 - ctdToUse = ctd1 INFO 2025-06-26 05:48:00,145 process.py process_mission():449 [1] Processing BIOLUME mission 2004.096.05 by user docker_user on host 671049448ece INFO 2025-06-26 05:48:00,145 process.py download_process():165 [1] Download and processing steps for 2004.096.05 INFO 2025-06-26 05:48:00,145 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004096/2004.096.05 INFO 2025-06-26 05:48:00,145 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004096/2004.096.05 to /data/auv_data/dorado/missionlogs/2004.096.05 INFO 2025-06-26 05:48:01,123 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.096.05 INFO 2025-06-26 05:48:01,123 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.05/ctdDriver.log (843347 bytes) INFO 2025-06-26 05:48:01,194 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.05/ctdDriver2.log (843253 bytes) INFO 2025-06-26 05:48:01,262 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.05/gps.log (15548 bytes) INFO 2025-06-26 05:48:01,271 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.05/hydroscatlog.log (576974 bytes) INFO 2025-06-26 05:48:01,345 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.05/navigation.log (1669265 bytes) INFO 2025-06-26 05:48:01,478 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.05/isuslog.log (45525 bytes) INFO 2025-06-26 05:48:01,487 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.05/parosci.log (577286 bytes) INFO 2025-06-26 05:48:01,539 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.05/tailCone.log (577339 bytes) INFO 2025-06-26 05:48:01,617 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.096.05/biolume.log (657292 bytes) INFO 2025-06-26 05:48:01,691 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:48:01,729 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.61 seconds WARNING 2025-06-26 05:48:01,729 process.py download_process():196 [1] No lopc.bin file for 2004.096.05 INFO 2025-06-26 05:48:01,729 process.py calibrate():227 [1] Calibration steps for 2004.096.05 INFO 2025-06-26 05:48:01,793 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2004.096.05 INFO 2025-06-26 05:48:01,801 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:48:01,803 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:48:02,339 calibrate.py _nudge_pos():1806 [1] 72: 0.190 -0.0001925 -0.0000300 75 0.25 -116.165 -22.552 2004-04-05T05:54:38.428790784 INFO 2025-06-26 05:48:02,656 calibrate.py _nudge_pos():1806 [1] 106: 0.190 -0.0000036 -0.0000103 15 0.05 -11.545 -40.778 2004-04-05T05:55:14.426324864 INFO 2025-06-26 05:48:03,067 calibrate.py _nudge_pos():1806 [1] 150: 0.190 -0.0034673 0.0040471 10900 36.33 -14.199 20.642 2004-04-05T06:32:17.424039168 INFO 2025-06-26 05:48:03,269 calibrate.py _nudge_pos():1806 [1] 172: 0.190 -0.0000048 0.0000075 15 0.05 -15.198 29.609 2004-04-05T06:32:41.432394240 INFO 2025-06-26 05:48:03,558 calibrate.py _nudge_pos():1862 [1] 186: - - - 3 0.01 - - INFO 2025-06-26 05:48:03,558 calibrate.py _nudge_pos():1868 [1] Points in final series = 11914 WARNING 2025-06-26 05:48:03,571 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:48:03,671 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:48:03,776 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:48:03,847 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:48:03,849 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.096.05/ctd1.nc INFO 2025-06-26 05:48:03,850 calibrate.py _range_qc_combined_nc():898 [1] Setting 2 ctd1_salinity values to NaN INFO 2025-06-26 05:48:03,850 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:48:03,850 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:48:03,945 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:48:04,020 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:48:04,022 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.096.05/ctd2.nc INFO 2025-06-26 05:48:04,023 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 05:48:04,023 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:48:04,023 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:48:04,032 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:48:04,158 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:48:04,163 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:48:04,164 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.096.05 ERROR 2025-06-26 05:48:04,164 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.096.05 INFO 2025-06-26 05:48:04,176 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05_cal.nc INFO 2025-06-26 05:48:04,222 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:48:04,226 process.py align():251 [1] Alignment steps for 2004.096.05 INFO 2025-06-26 05:48:04,249 align.py process_cal():139 [1] Processing dorado_2004.096.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.096.05 INFO 2025-06-26 05:48:04,256 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:04,258 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:04,274 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:04,276 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:04,291 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:04,292 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:04,301 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:48:04,301 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:48:04,308 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:48:04,310 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:04,326 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:04,328 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,343 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:04,345 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,360 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:48:04,362 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,376 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,378 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,393 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,395 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,409 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,411 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,426 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,427 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,442 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,444 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,458 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,460 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,475 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,476 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,491 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,493 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,508 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,510 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,524 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,526 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,541 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,543 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,558 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,560 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,575 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,577 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,592 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,594 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,609 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,611 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,626 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,628 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,643 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.096.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:48:04,645 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:48:04,663 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:04,678 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:04,693 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:48:04,709 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:48:04,725 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:48:04,740 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05_align.nc INFO 2025-06-26 05:48:04,784 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:48:04,786 process.py resample():273 [1] Resampling steps for 2004.096.05 INFO 2025-06-26 05:48:04,787 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:48:04,808 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05_align.nc mission netCDF file INFO 2025-06-26 05:48:04,813 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05_align.nc mission netCDF file INFO 2025-06-26 05:48:04,814 resample.py get_mission_start_end():1145 [1] navigation: 2004-04-05T05:53:30.233462528 to 2004-04-05T06:33:13.030229760 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 05:48:04,815 resample.py get_mission_start_end():1145 [1] hs2 : 2004-04-05T05:53:12.264693504 to 2004-04-05T06:33:13.040229120 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:48:04,816 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-04-05T05:53:19.204218112 to 2004-04-05T06:33:12.890239232 (0 days 00:00:00.149989888 before mission_end) INFO 2025-06-26 05:48:04,818 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-04-05T05:53:19.544194688 to 2004-04-05T06:33:13.000231680 (0 days 00:00:00.039997440 before mission_end) INFO 2025-06-26 05:48:04,819 resample.py get_mission_start_end():1145 [1] isus : 2004-04-05T05:54:24.279760128 to 2004-04-05T06:33:13.030229760 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 05:48:04,820 resample.py get_mission_start_end():1145 [1] biolume : 2004-04-05T05:53:07.434990208 to 2004-04-05T06:33:12.220251136 (0 days 00:00:00.819977984 before mission_end) INFO 2025-06-26 05:48:04,821 resample.py get_mission_start_end():1145 [1] tailcone : 2004-04-05T05:53:09.804862080 to 2004-04-05T06:33:13.030229760 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 05:48:04,822 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05_align.nc mission netCDF file INFO 2025-06-26 05:48:04,822 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,874 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,885 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,896 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,908 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,919 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,930 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,941 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,951 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,961 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,974 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,985 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:04,994 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,004 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,014 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,023 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,032 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,043 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,054 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,064 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,075 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,085 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,096 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,105 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,113 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,121 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,131 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,142 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:48:05,246 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05_1S.nc INFO 2025-06-26 05:48:05,928 create_products.py gulper_odv():401 [1] No gulper times found for 2004.096.05 INFO 2025-06-26 05:48:05,928 process.py archive():337 [1] Archiving steps for 2004.096.05 INFO 2025-06-26 05:48:05,928 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05, BASE_PATH = /data/auv_data INFO 2025-06-26 05:48:05,928 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:48:05,930 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.096.05_1S.nc INFO 2025-06-26 05:48:05,939 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:05,940 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.096.05_cal.nc INFO 2025-06-26 05:48:05,956 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:05,957 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.096.05_align.nc INFO 2025-06-26 05:48:05,973 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:48:05,981 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.05 done. INFO 2025-06-26 05:48:05,989 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.05 done. INFO 2025-06-26 05:48:05,993 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.05 done. INFO 2025-06-26 05:48:06,000 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.05 done. INFO 2025-06-26 05:48:06,011 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.05 done. INFO 2025-06-26 05:48:06,016 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.05 done. INFO 2025-06-26 05:48:06,022 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.05 done. INFO 2025-06-26 05:48:06,029 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.05 done. INFO 2025-06-26 05:48:06,041 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004096/2004.096.05 done. INFO 2025-06-26 05:48:06,041 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:48:06,041 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.096.05/dorado_2004.096.05_processing.log /Volumes/AUVCTD/surveys/2004/netcdf