INFO 2025-06-26 05:47:33,563 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:47:33,563 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Missing netCDF files, cant process yet - re-portaled 8/10/05 - ctdToUse = ctd1 INFO 2025-06-26 05:47:33,563 process.py process_mission():449 [1] Processing BIOLUME mission 2004.095.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:47:33,563 process.py download_process():165 [1] Download and processing steps for 2004.095.02 INFO 2025-06-26 05:47:33,563 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004095/2004.095.02 INFO 2025-06-26 05:47:33,563 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004095/2004.095.02 to /data/auv_data/dorado/missionlogs/2004.095.02 INFO 2025-06-26 05:47:35,394 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.095.02 INFO 2025-06-26 05:47:35,394 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.095.02/ctdDriver.log (5539379 bytes) INFO 2025-06-26 05:47:35,804 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.095.02/ctdDriver2.log (5539373 bytes) INFO 2025-06-26 05:47:36,230 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.095.02/gps.log (36860 bytes) INFO 2025-06-26 05:47:36,243 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.095.02/hydroscatlog.log (3779174 bytes) INFO 2025-06-26 05:47:36,697 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.095.02/navigation.log (11013985 bytes) INFO 2025-06-26 05:47:37,618 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.095.02/isuslog.log (304917 bytes) INFO 2025-06-26 05:47:37,651 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.095.02/parosci.log (3781238 bytes) INFO 2025-06-26 05:47:37,967 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.095.02/tailCone.log (3781051 bytes) INFO 2025-06-26 05:47:38,445 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.095.02/biolume.log (4288764 bytes) INFO 2025-06-26 05:47:38,902 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:47:39,128 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.73 seconds WARNING 2025-06-26 05:47:39,128 process.py download_process():196 [1] No lopc.bin file for 2004.095.02 INFO 2025-06-26 05:47:39,129 process.py calibrate():227 [1] Calibration steps for 2004.095.02 INFO 2025-06-26 05:47:39,274 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2004.095.02 INFO 2025-06-26 05:47:39,293 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:47:39,295 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:47:40,673 calibrate.py _nudge_pos():1806 [1] 163: 0.120 -0.0000329 0.0000177 15 0.05 -104.277 70.306 2004-04-04T05:19:42.674104704 INFO 2025-06-26 05:47:40,812 calibrate.py _nudge_pos():1806 [1] 178: 0.130 -0.0023239 0.0009706 12290 40.96 -8.402 4.391 2004-04-04T06:00:54.674760832 INFO 2025-06-26 05:47:41,264 calibrate.py _nudge_pos():1806 [1] 224: 0.120 0.0000137 0.0000675 35 0.11 17.841 110.412 2004-04-04T06:01:46.681198336 INFO 2025-06-26 05:47:41,369 calibrate.py _nudge_pos():1806 [1] 235: 0.130 -0.0024589 0.0011721 13340 44.46 -8.194 4.885 2004-04-04T06:46:24.677742976 INFO 2025-06-26 05:47:42,004 calibrate.py _nudge_pos():1806 [1] 301: 0.130 -0.0029579 0.0014172 13535 45.11 -9.718 5.821 2004-04-04T07:32:36.677847808 INFO 2025-06-26 05:47:42,669 calibrate.py _nudge_pos():1806 [1] 370: 0.130 -0.0062342 0.0019087 13520 45.06 -20.512 7.849 2004-04-04T08:18:48.677953024 INFO 2025-06-26 05:47:43,263 calibrate.py _nudge_pos():1806 [1] 432: 0.130 -0.0036625 0.0010812 13225 44.08 -12.324 4.545 2004-04-04T09:03:54.682578816 INFO 2025-06-26 05:47:43,790 calibrate.py _nudge_pos():1806 [1] 486: 0.140 -0.0019287 0.0001845 10355 34.51 -8.292 0.991 2004-04-04T09:39:18.677075328 INFO 2025-06-26 05:47:43,928 calibrate.py _nudge_pos():1862 [1] 478: - - - 4 0.01 - - INFO 2025-06-26 05:47:43,928 calibrate.py _nudge_pos():1868 [1] Points in final series = 78663 WARNING 2025-06-26 05:47:43,994 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:47:44,562 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:47:45,134 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:47:45,590 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:47:45,592 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.095.02/ctd1.nc INFO 2025-06-26 05:47:45,594 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:47:45,594 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:47:45,594 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:47:46,139 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:47:46,603 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:47:46,606 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.095.02/ctd2.nc INFO 2025-06-26 05:47:46,607 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:47:46,607 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:47:46,607 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:47:46,632 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:47:47,521 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: 0 seconds ERROR 2025-06-26 05:47:47,527 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:47:47,527 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.095.02 ERROR 2025-06-26 05:47:47,527 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.095.02 INFO 2025-06-26 05:47:47,590 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02_cal.nc INFO 2025-06-26 05:47:47,669 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:47:47,674 process.py align():251 [1] Alignment steps for 2004.095.02 INFO 2025-06-26 05:47:47,700 align.py process_cal():139 [1] Processing dorado_2004.095.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.095.02 INFO 2025-06-26 05:47:47,725 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:47:47,729 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:47:47,791 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:47:47,795 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:47:47,857 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:47:47,861 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:47:47,898 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:47:47,899 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:47:47,924 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:47:47,928 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:47:47,984 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:47:47,988 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,040 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:47:48,044 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,095 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:47:48,098 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,150 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,153 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,204 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,208 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,258 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,262 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,313 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,317 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,368 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,372 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,423 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,427 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,478 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,482 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,534 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,537 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,588 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,591 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,642 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,645 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,696 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,700 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,752 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,756 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,807 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,811 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,863 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,866 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,918 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,923 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:48,975 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:48,979 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:49,031 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.095.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:49,034 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:49,090 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:47:49,127 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:47:49,165 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:47:49,204 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:47:49,245 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:47:49,286 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02_align.nc INFO 2025-06-26 05:47:49,361 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:47:49,363 process.py resample():273 [1] Resampling steps for 2004.095.02 INFO 2025-06-26 05:47:49,364 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:47:49,389 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02_align.nc mission netCDF file INFO 2025-06-26 05:47:49,394 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02_align.nc mission netCDF file INFO 2025-06-26 05:47:49,395 resample.py get_mission_start_end():1145 [1] navigation: 2004-04-04T05:17:20.083872768 to 2004-04-04T09:39:32.476130048 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 05:47:49,397 resample.py get_mission_start_end():1145 [1] hs2 : 2004-04-04T05:17:02.055107840 to 2004-04-04T09:39:32.286143104 (0 days 00:00:00.239983488 before mission_end) INFO 2025-06-26 05:47:49,398 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-04-04T05:17:18.124007040 to 2004-04-04T09:39:32.516127360 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 05:47:49,400 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-04-04T05:17:17.944019328 to 2004-04-04T09:39:32.326140160 (0 days 00:00:00.199986432 before mission_end) INFO 2025-06-26 05:47:49,401 resample.py get_mission_start_end():1145 [1] isus : 2004-04-04T05:18:14.070174464 to 2004-04-04T09:39:32.066158080 (0 days 00:00:00.459968512 before mission_end) INFO 2025-06-26 05:47:49,403 resample.py get_mission_start_end():1145 [1] biolume : 2004-04-04T05:16:57.285400192 to 2004-04-04T09:39:31.936132608 (0 days 00:00:00.589993984 before mission_end) INFO 2025-06-26 05:47:49,404 resample.py get_mission_start_end():1145 [1] tailcone : 2004-04-04T05:16:59.555278976 to 2004-04-04T09:39:32.526126592 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:47:49,405 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02_align.nc mission netCDF file INFO 2025-06-26 05:47:49,405 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,585 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,619 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,650 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,683 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,714 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,742 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,770 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,796 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,821 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,845 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,870 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,895 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,920 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,945 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,971 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:49,996 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,027 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,055 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,082 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,108 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,135 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,163 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,178 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,190 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,202 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,215 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,246 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:50,427 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02_1S.nc INFO 2025-06-26 05:47:51,358 create_products.py gulper_odv():401 [1] No gulper times found for 2004.095.02 INFO 2025-06-26 05:47:51,359 process.py archive():337 [1] Archiving steps for 2004.095.02 INFO 2025-06-26 05:47:51,359 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:47:51,359 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:47:51,360 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.095.02_1S.nc INFO 2025-06-26 05:47:51,378 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:47:51,379 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.095.02_cal.nc INFO 2025-06-26 05:47:51,446 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:47:51,447 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.095.02_align.nc INFO 2025-06-26 05:47:51,521 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:47:51,546 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004095/2004.095.02 done. INFO 2025-06-26 05:47:51,569 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004095/2004.095.02 done. INFO 2025-06-26 05:47:51,574 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004095/2004.095.02 done. INFO 2025-06-26 05:47:51,592 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004095/2004.095.02 done. INFO 2025-06-26 05:47:51,633 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004095/2004.095.02 done. INFO 2025-06-26 05:47:51,640 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004095/2004.095.02 done. INFO 2025-06-26 05:47:51,655 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004095/2004.095.02 done. INFO 2025-06-26 05:47:51,675 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004095/2004.095.02 done. INFO 2025-06-26 05:47:51,726 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004095/2004.095.02 done. INFO 2025-06-26 05:47:51,726 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:47:51,726 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.095.02/dorado_2004.095.02_processing.log /Volumes/AUVCTD/surveys/2004/netcdf