INFO 2025-06-26 05:46:53,220 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:46:53,220 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Isus data (nitrate) is missing for 069.03 - re-portaled 8/9/05 - ctdToUse = ctd1 INFO 2025-06-26 05:46:53,220 process.py process_mission():449 [1] Processing AUVCTD mission 2004.069.03 by user docker_user on host 671049448ece INFO 2025-06-26 05:46:53,220 process.py download_process():165 [1] Download and processing steps for 2004.069.03 INFO 2025-06-26 05:46:53,220 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004069/2004.069.03 INFO 2025-06-26 05:46:53,221 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004069/2004.069.03 to /data/auv_data/dorado/missionlogs/2004.069.03 INFO 2025-06-26 05:46:55,117 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.069.03 INFO 2025-06-26 05:46:55,118 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.069.03/ctdDriver.log (6259483 bytes) INFO 2025-06-26 05:46:55,585 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.069.03/ctdDriver2.log (6259389 bytes) INFO 2025-06-26 05:46:56,039 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.069.03/gps.log (52628 bytes) INFO 2025-06-26 05:46:56,053 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.069.03/hydroscatlog.log (4270154 bytes) INFO 2025-06-26 05:46:56,541 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2004.069.03/hydroscatlog.log: [40] INFO 2025-06-26 05:46:56,552 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.069.03/navigation.log (12445765 bytes) INFO 2025-06-26 05:46:57,495 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.069.03/isuslog.log (0 bytes) WARNING 2025-06-26 05:46:57,495 logs2netcdfs.py download_process_logs():790 [1] /data/auv_data/dorado/missionlogs/2004.069.03/isuslog.log is empty INFO 2025-06-26 05:46:57,495 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.069.03/parosci.log (4272086 bytes) INFO 2025-06-26 05:46:57,852 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.069.03/tailCone.log (4271947 bytes) INFO 2025-06-26 05:46:58,380 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.26 seconds WARNING 2025-06-26 05:46:58,381 process.py download_process():196 [1] No lopc.bin file for 2004.069.03 INFO 2025-06-26 05:46:58,381 process.py calibrate():227 [1] Calibration steps for 2004.069.03 INFO 2025-06-26 05:46:58,512 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2004.069.03 INFO 2025-06-26 05:46:58,534 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:46:58,535 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:47:00,210 calibrate.py _nudge_pos():1806 [1] 188: 0.060 0.0009693 0.0017912 11400 38.00 3.788 8.735 2004-03-09T18:44:49.720001664 INFO 2025-06-26 05:47:00,240 calibrate.py _nudge_pos():1806 [1] 191: 0.060 0.0010003 0.0017553 80 0.26 564.172 1235.232 2004-03-09T18:45:07.718768896 INFO 2025-06-26 05:47:00,669 calibrate.py _nudge_pos():1806 [1] 235: 0.060 0.0000356 -0.0000170 65 0.21 24.795 -14.762 2004-03-09T18:46:03.724931968 INFO 2025-06-26 05:47:00,726 calibrate.py _nudge_pos():1806 [1] 241: 0.060 0.0007634 0.0025907 11365 37.88 2.992 12.673 2004-03-09T19:24:01.718878720 INFO 2025-06-26 05:47:01,245 calibrate.py _nudge_pos():1806 [1] 294: 0.060 0.0013205 0.0028895 11319 37.73 5.197 14.191 2004-03-09T20:02:37.720221696 INFO 2025-06-26 05:47:01,810 calibrate.py _nudge_pos():1806 [1] 353: 0.060 0.0000337 -0.0000825 30 0.10 51.771 -158.197 2004-03-09T20:03:41.725837184 INFO 2025-06-26 05:47:01,907 calibrate.py _nudge_pos():1806 [1] 363: 0.070 0.0009623 0.0027101 11455 38.18 3.742 13.153 2004-03-09T20:42:01.718276992 INFO 2025-06-26 05:47:02,376 calibrate.py _nudge_pos():1806 [1] 412: 0.070 0.0005623 0.0032608 11370 37.90 2.203 15.944 2004-03-09T21:20:43.719208960 INFO 2025-06-26 05:47:02,876 calibrate.py _nudge_pos():1806 [1] 463: 0.070 -0.0000054 0.0000063 30 0.10 -8.352 12.075 2004-03-09T21:21:39.725372288 INFO 2025-06-26 05:47:02,995 calibrate.py _nudge_pos():1806 [1] 475: 0.070 0.0003072 0.0026601 11515 38.38 1.188 12.843 2004-03-09T22:00:13.726852224 INFO 2025-06-26 05:47:03,553 calibrate.py _nudge_pos():1806 [1] 532: 0.080 -0.0002618 0.0034360 11090 36.96 -1.051 17.225 2004-03-09T22:38:07.721072896 INFO 2025-06-26 05:47:04,238 calibrate.py _nudge_pos():1806 [1] 602: 0.080 -0.0001295 0.0011313 5745 19.15 -1.004 10.948 2004-03-09T22:58:25.717634432 INFO 2025-06-26 05:47:05,381 calibrate.py _nudge_pos():1862 [1] 697: - - - 5 0.01 - - INFO 2025-06-26 05:47:05,381 calibrate.py _nudge_pos():1868 [1] Points in final series = 88889 WARNING 2025-06-26 05:47:05,454 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:47:14,925 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:47:15,568 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:47:16,092 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:47:16,095 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.069.03/ctd1.nc INFO 2025-06-26 05:47:16,096 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:47:16,096 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:47:16,096 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:47:16,778 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:47:17,331 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:47:17,333 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.069.03/ctd2.nc INFO 2025-06-26 05:47:17,334 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 05:47:17,335 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:47:17,335 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:47:17,335 calibrate.py process_logs():3542 [1] Error processing isus: isus has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.069.03 ERROR 2025-06-26 05:47:17,335 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.069.03 ERROR 2025-06-26 05:47:17,335 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.069.03 ERROR 2025-06-26 05:47:17,335 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.069.03 INFO 2025-06-26 05:47:17,406 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03_cal.nc INFO 2025-06-26 05:47:17,478 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:47:17,482 process.py align():251 [1] Alignment steps for 2004.069.03 INFO 2025-06-26 05:47:17,504 align.py process_cal():139 [1] Processing dorado_2004.069.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.069.03 INFO 2025-06-26 05:47:17,532 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:47:17,535 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:47:17,606 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:47:17,611 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:47:17,676 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:47:17,680 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:47:17,719 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:47:17,719 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:47:17,745 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:47:17,750 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:47:17,811 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:47:17,815 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:17,871 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:47:17,875 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:17,934 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:47:17,938 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:17,994 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:17,998 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,055 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,059 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,115 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,119 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,175 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,179 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,236 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,239 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,296 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,300 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,356 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,360 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,416 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,420 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,477 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,480 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,537 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,540 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,596 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,600 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,657 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,661 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,719 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,724 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,780 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,785 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,849 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,854 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,910 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,915 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:18,971 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.069.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:47:18,974 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:47:19,037 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:47:19,081 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03_align.nc INFO 2025-06-26 05:47:19,145 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:47:19,147 process.py resample():273 [1] Resampling steps for 2004.069.03 INFO 2025-06-26 05:47:19,147 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:47:19,168 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03_align.nc mission netCDF file INFO 2025-06-26 05:47:19,172 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03_align.nc mission netCDF file INFO 2025-06-26 05:47:19,173 resample.py get_mission_start_end():1145 [1] navigation: 2004-03-09T18:04:04.727495168 to 2004-03-09T23:00:22.719619328 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:47:19,175 resample.py get_mission_start_end():1145 [1] hs2 : 2004-03-09T18:03:46.748726784 to 2004-03-09T23:00:22.579628928 (0 days 00:00:00.139990400 before mission_end) INFO 2025-06-26 05:47:19,176 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-03-09T18:04:02.507647232 to 2004-03-09T23:00:22.599627520 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 05:47:19,178 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-03-09T18:04:02.857623296 to 2004-03-09T23:00:22.689621504 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 05:47:19,179 resample.py get_mission_start_end():1145 [1] tailcone : 2004-03-09T18:03:43.748932352 to 2004-03-09T23:00:22.629625600 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 05:47:19,180 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03_align.nc mission netCDF file INFO 2025-06-26 05:47:19,181 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,379 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,415 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,449 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,485 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,518 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,548 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,578 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,608 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,636 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,664 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,691 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,719 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,747 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,774 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,802 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,829 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,860 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,889 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,918 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,947 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:19,975 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:20,006 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:20,041 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:47:20,228 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03_1S.nc INFO 2025-06-26 05:47:21,276 create_products.py gulper_odv():401 [1] No gulper times found for 2004.069.03 INFO 2025-06-26 05:47:21,276 process.py archive():337 [1] Archiving steps for 2004.069.03 INFO 2025-06-26 05:47:21,276 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03, BASE_PATH = /data/auv_data INFO 2025-06-26 05:47:21,277 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:47:21,278 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.069.03_1S.nc INFO 2025-06-26 05:47:21,294 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:47:21,295 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.069.03_cal.nc INFO 2025-06-26 05:47:21,366 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:47:21,367 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.069.03_align.nc INFO 2025-06-26 05:47:21,440 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:47:21,464 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.069.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004069/2004.069.03 done. INFO 2025-06-26 05:47:21,485 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.069.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004069/2004.069.03 done. INFO 2025-06-26 05:47:21,490 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.069.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004069/2004.069.03 done. INFO 2025-06-26 05:47:21,505 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.069.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004069/2004.069.03 done. INFO 2025-06-26 05:47:21,544 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.069.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004069/2004.069.03 done. INFO 2025-06-26 05:47:21,561 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.069.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004069/2004.069.03 done. INFO 2025-06-26 05:47:21,580 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.069.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004069/2004.069.03 done. INFO 2025-06-26 05:47:21,581 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:47:21,581 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.069.03/dorado_2004.069.03_processing.log /Volumes/AUVCTD/surveys/2004/netcdf