INFO 2025-06-26 05:46:45,283 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:46:45,283 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 8/9/05 - ctdToUse = ctd1 INFO 2025-06-26 05:46:45,283 process.py process_mission():449 [1] Processing AUVCTD mission 2004.035.05 by user docker_user on host 671049448ece INFO 2025-06-26 05:46:45,283 process.py download_process():165 [1] Download and processing steps for 2004.035.05 INFO 2025-06-26 05:46:45,283 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004035/2004.035.05 INFO 2025-06-26 05:46:45,283 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004035/2004.035.05 to /data/auv_data/dorado/missionlogs/2004.035.05 INFO 2025-06-26 05:46:46,250 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.035.05 INFO 2025-06-26 05:46:46,251 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.035.05/ctdDriver.log (1173963 bytes) INFO 2025-06-26 05:46:46,345 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.035.05/ctdDriver2.log (1173957 bytes) INFO 2025-06-26 05:46:46,432 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.035.05/gps.log (27572 bytes) INFO 2025-06-26 05:46:46,443 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.035.05/hydroscatlog.log (804314 bytes) INFO 2025-06-26 05:46:46,543 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.035.05/navigation.log (2333005 bytes) INFO 2025-06-26 05:46:46,760 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.035.05/isuslog.log (63733 bytes) INFO 2025-06-26 05:46:46,776 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.035.05/parosci.log (804854 bytes) INFO 2025-06-26 05:46:46,894 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.035.05/tailCone.log (804811 bytes) INFO 2025-06-26 05:46:47,057 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.81 seconds WARNING 2025-06-26 05:46:47,057 process.py download_process():196 [1] No lopc.bin file for 2004.035.05 INFO 2025-06-26 05:46:47,057 process.py calibrate():227 [1] Calibration steps for 2004.035.05 INFO 2025-06-26 05:46:47,119 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2004.035.05 INFO 2025-06-26 05:46:47,127 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:46:47,129 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:46:48,510 calibrate.py _nudge_pos():1806 [1] 164: 0.050 0.0009709 0.0000008 3725 12.41 11.605 0.012 2004-02-04T17:51:18.833121280 INFO 2025-06-26 05:46:49,130 calibrate.py _nudge_pos():1806 [1] 230: 0.060 -0.0013571 0.0005288 3845 12.81 -15.714 7.648 2004-02-04T18:05:12.825988736 INFO 2025-06-26 05:46:49,647 calibrate.py _nudge_pos():1806 [1] 283: 0.050 -0.0004861 -0.0007330 3580 11.93 -6.046 -11.384 2004-02-04T18:18:00.833376640 INFO 2025-06-26 05:46:50,153 calibrate.py _nudge_pos():1806 [1] 336: 0.060 0.0003018 0.0006505 3730 12.43 3.603 9.697 2004-02-04T18:31:18.828710272 INFO 2025-06-26 05:46:50,266 calibrate.py _nudge_pos():1806 [1] 348: 0.060 -0.0000012 -0.0000077 60 0.20 -0.907 -7.228 2004-02-04T18:31:41.827134848 INFO 2025-06-26 05:46:50,483 calibrate.py _nudge_pos():1862 [1] 349: - - - 3 0.01 - - INFO 2025-06-26 05:46:50,483 calibrate.py _nudge_pos():1868 [1] Points in final series = 16656 WARNING 2025-06-26 05:46:50,499 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:46:50,635 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:50,778 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:50,884 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:50,886 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.035.05/ctd1.nc INFO 2025-06-26 05:46:50,887 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:46:50,887 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:46:50,887 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:46:51,016 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:51,118 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:51,119 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.035.05/ctd2.nc INFO 2025-06-26 05:46:51,120 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 05:46:51,121 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:46:51,121 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:46:51,129 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.035.05 ERROR 2025-06-26 05:46:51,129 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.035.05 ERROR 2025-06-26 05:46:51,129 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.035.05 INFO 2025-06-26 05:46:51,145 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05_cal.nc INFO 2025-06-26 05:46:51,194 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:46:51,198 process.py align():251 [1] Alignment steps for 2004.035.05 INFO 2025-06-26 05:46:51,220 align.py process_cal():139 [1] Processing dorado_2004.035.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.035.05 INFO 2025-06-26 05:46:51,229 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:51,231 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:51,251 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:51,253 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:51,273 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:51,275 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:51,288 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:46:51,288 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:46:51,297 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:51,299 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:51,320 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:46:51,322 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,341 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:46:51,343 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,360 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:46:51,363 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,380 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,382 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,399 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,402 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,419 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,421 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,439 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,441 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,458 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,460 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,477 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,479 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,496 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,498 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,515 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,517 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,534 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,537 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,554 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,556 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,573 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,575 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,593 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,595 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,613 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,615 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,633 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,635 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,652 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,655 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,672 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,675 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,693 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.035.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:51,694 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:51,715 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:46:51,732 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:46:51,749 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:46:51,767 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:51,783 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05_align.nc INFO 2025-06-26 05:46:51,831 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:46:51,833 process.py resample():273 [1] Resampling steps for 2004.035.05 INFO 2025-06-26 05:46:51,834 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:46:51,856 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05_align.nc mission netCDF file INFO 2025-06-26 05:46:51,860 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05_align.nc mission netCDF file INFO 2025-06-26 05:46:51,861 resample.py get_mission_start_end():1145 [1] navigation: 2004-02-04T17:36:33.433775232 to 2004-02-04T18:32:04.425586688 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:46:51,862 resample.py get_mission_start_end():1145 [1] hs2 : 2004-02-04T17:36:15.505003392 to 2004-02-04T18:32:04.315594240 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 05:46:51,863 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-02-04T17:36:31.393914880 to 2004-02-04T18:32:04.315594240 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 05:46:51,865 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-02-04T17:36:31.423912960 to 2004-02-04T18:32:04.335592704 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 05:46:51,866 resample.py get_mission_start_end():1145 [1] isus : 2004-02-04T17:37:28.180024832 to 2004-02-04T18:32:04.035613312 (0 days 00:00:00.389973376 before mission_end) INFO 2025-06-26 05:46:51,867 resample.py get_mission_start_end():1145 [1] tailcone : 2004-02-04T17:36:12.965177600 to 2004-02-04T18:32:04.385589376 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 05:46:51,868 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05_align.nc mission netCDF file INFO 2025-06-26 05:46:51,868 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:51,928 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:51,941 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:51,954 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:51,968 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:51,981 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:51,994 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,007 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,019 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,029 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,040 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,051 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,061 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,071 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,082 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,093 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,104 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,116 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,128 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,139 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,151 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,165 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,178 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,187 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,196 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,204 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,217 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:52,328 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05_1S.nc INFO 2025-06-26 05:46:53,098 create_products.py gulper_odv():401 [1] No gulper times found for 2004.035.05 INFO 2025-06-26 05:46:53,098 process.py archive():337 [1] Archiving steps for 2004.035.05 INFO 2025-06-26 05:46:53,098 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05, BASE_PATH = /data/auv_data INFO 2025-06-26 05:46:53,098 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:46:53,100 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.035.05_1S.nc INFO 2025-06-26 05:46:53,108 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:46:53,109 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.035.05_cal.nc INFO 2025-06-26 05:46:53,128 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:46:53,129 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.035.05_align.nc INFO 2025-06-26 05:46:53,149 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:46:53,160 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004035/2004.035.05 done. INFO 2025-06-26 05:46:53,168 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004035/2004.035.05 done. INFO 2025-06-26 05:46:53,172 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004035/2004.035.05 done. INFO 2025-06-26 05:46:53,179 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004035/2004.035.05 done. INFO 2025-06-26 05:46:53,191 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004035/2004.035.05 done. INFO 2025-06-26 05:46:53,195 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004035/2004.035.05 done. INFO 2025-06-26 05:46:53,202 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004035/2004.035.05 done. INFO 2025-06-26 05:46:53,210 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004035/2004.035.05 done. INFO 2025-06-26 05:46:53,210 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:46:53,210 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.035.05/dorado_2004.035.05_processing.log /Volumes/AUVCTD/surveys/2004/netcdf