INFO 2025-06-26 05:46:34,288 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:46:34,288 process.py process_mission():434 [1] dorado_info[mission]["comment"] = 2004.029.03: parosci interp1 problem - multigenerateNetcdf failed to create navigation.nc file because of '#' problem # begin # Will need to rerun the portal with the fix to set byteOffset. Re-portaled & processed 7/26/05 According to GPS data AUV is in Mexico beginning: 29 Jan 2004 19:37:36 GMT 1.0754050561900759E9 0.4733113223544617 *** Need to reprocess with just the .03 mission and not include the data equal to and after this time *** Had bad nav point - processed 8/10/05 - ctdToUse = ctd1 INFO 2025-06-26 05:46:34,288 process.py process_mission():449 [1] Processing AUVCTD mission 2004.029.05 by user docker_user on host 671049448ece INFO 2025-06-26 05:46:34,288 process.py download_process():165 [1] Download and processing steps for 2004.029.05 INFO 2025-06-26 05:46:34,289 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004029/2004.029.05 INFO 2025-06-26 05:46:34,289 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004029/2004.029.05 to /data/auv_data/dorado/missionlogs/2004.029.05 INFO 2025-06-26 05:46:35,829 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.029.05 INFO 2025-06-26 05:46:35,829 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.029.05/ctdDriver.log (3267835 bytes) INFO 2025-06-26 05:46:36,073 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.029.05/ctdDriver2.log (3267917 bytes) INFO 2025-06-26 05:46:36,318 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.029.05/gps.log (25412 bytes) INFO 2025-06-26 05:46:36,330 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.029.05/hydroscatlog.log (2231474 bytes) INFO 2025-06-26 05:46:36,595 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.029.05/navigation.log (6497165 bytes) INFO 2025-06-26 05:46:37,096 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.029.05/isuslog.log (178229 bytes) INFO 2025-06-26 05:46:37,118 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.029.05/parosci.log (2232518 bytes) INFO 2025-06-26 05:46:37,311 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.029.05/tailCone.log (2232427 bytes) INFO 2025-06-26 05:46:37,588 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.029.05/biolume.log (0 bytes) WARNING 2025-06-26 05:46:37,588 logs2netcdfs.py download_process_logs():790 [1] /data/auv_data/dorado/missionlogs/2004.029.05/biolume.log is empty INFO 2025-06-26 05:46:37,588 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.76 seconds WARNING 2025-06-26 05:46:37,588 process.py download_process():196 [1] No lopc.bin file for 2004.029.05 INFO 2025-06-26 05:46:37,588 process.py calibrate():227 [1] Calibration steps for 2004.029.05 INFO 2025-06-26 05:46:37,681 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2004.029.05 INFO 2025-06-26 05:46:37,694 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:46:37,695 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:46:38,973 calibrate.py _nudge_pos():1806 [1] 157: 0.050 0.0036737 0.0007458 11420 38.06 14.329 3.631 2004-01-29T21:36:01.133353984 INFO 2025-06-26 05:46:39,622 calibrate.py _nudge_pos():1806 [1] 228: 0.050 0.0016408 0.0019606 11650 38.83 6.273 9.356 2004-01-29T22:16:01.138942208 INFO 2025-06-26 05:46:40,046 calibrate.py _nudge_pos():1806 [1] 273: 0.050 0.0005619 0.0033267 11510 38.36 2.174 16.068 2004-01-29T22:55:07.138230272 INFO 2025-06-26 05:46:40,498 calibrate.py _nudge_pos():1806 [1] 321: 0.060 0.0000072 0.0000061 75 0.25 4.305 4.592 2004-01-29T22:56:09.133983360 INFO 2025-06-26 05:46:40,583 calibrate.py _nudge_pos():1806 [1] 330: 0.060 0.0005713 0.0024173 10180 33.93 2.499 13.201 2004-01-29T23:30:13.133959808 INFO 2025-06-26 05:46:40,682 calibrate.py _nudge_pos():1862 [1] 319: - - - 2 0.00 - - INFO 2025-06-26 05:46:40,682 calibrate.py _nudge_pos():1868 [1] Points in final series = 46400 WARNING 2025-06-26 05:46:40,722 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:46:41,068 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:41,419 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:41,692 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:41,694 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.029.05/ctd1.nc INFO 2025-06-26 05:46:41,695 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:46:41,695 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:46:41,695 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:46:42,033 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:42,388 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:42,390 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.029.05/ctd2.nc INFO 2025-06-26 05:46:42,391 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:46:42,392 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:46:42,392 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:46:42,402 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.029.05 ERROR 2025-06-26 05:46:42,403 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.029.05 ERROR 2025-06-26 05:46:42,403 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.029.05 INFO 2025-06-26 05:46:42,443 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05_cal.nc INFO 2025-06-26 05:46:42,503 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:46:42,507 process.py align():251 [1] Alignment steps for 2004.029.05 INFO 2025-06-26 05:46:42,531 align.py process_cal():139 [1] Processing dorado_2004.029.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.029.05 INFO 2025-06-26 05:46:42,547 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:42,550 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:42,590 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:42,593 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:42,631 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:42,634 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:42,657 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:46:42,657 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:46:42,672 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:42,675 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:42,712 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:46:42,715 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:42,748 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:46:42,751 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:42,785 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:46:42,788 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:42,821 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:42,824 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:42,858 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:42,861 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:42,894 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:42,897 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:42,931 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:42,934 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:42,968 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:42,971 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,004 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,007 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,042 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,045 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,078 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,081 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,116 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,119 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,154 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,156 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,191 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,194 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,229 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,232 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,266 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,269 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,303 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,306 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,341 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,344 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,378 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,381 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,415 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.029.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:43,418 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:43,456 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:46:43,483 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:46:43,509 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:46:43,538 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:43,567 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05_align.nc INFO 2025-06-26 05:46:43,622 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:46:43,624 process.py resample():273 [1] Resampling steps for 2004.029.05 INFO 2025-06-26 05:46:43,625 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:46:43,647 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05_align.nc mission netCDF file INFO 2025-06-26 05:46:43,651 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05_align.nc mission netCDF file INFO 2025-06-26 05:46:43,653 resample.py get_mission_start_end():1145 [1] navigation: 2004-01-29T20:55:43.738956928 to 2004-01-29T23:30:23.533247488 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 05:46:43,654 resample.py get_mission_start_end():1145 [1] hs2 : 2004-01-29T20:55:25.990172672 to 2004-01-29T23:30:23.383257600 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 05:46:43,655 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-01-29T20:55:42.059072000 to 2004-01-29T23:30:23.353259776 (0 days 00:00:00.209985536 before mission_end) INFO 2025-06-26 05:46:43,657 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-01-29T20:55:41.829087744 to 2004-01-29T23:30:23.363259136 (0 days 00:00:00.199986176 before mission_end) INFO 2025-06-26 05:46:43,658 resample.py get_mission_start_end():1145 [1] isus : 2004-01-29T20:56:38.515204480 to 2004-01-29T23:30:21.993352832 (0 days 00:00:01.569892480 before mission_end) INFO 2025-06-26 05:46:43,659 resample.py get_mission_start_end():1145 [1] tailcone : 2004-01-29T20:55:23.610335872 to 2004-01-29T23:30:23.563245312 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:46:43,660 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05_align.nc mission netCDF file INFO 2025-06-26 05:46:43,660 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,778 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,801 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,823 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,845 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,865 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,884 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,904 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,923 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,941 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,958 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,975 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:43,992 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,009 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,027 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,044 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,062 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,081 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,100 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,118 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,136 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,154 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,172 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,183 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,194 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,204 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,227 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:44,371 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05_1S.nc INFO 2025-06-26 05:46:45,046 create_products.py gulper_odv():401 [1] No gulper times found for 2004.029.05 INFO 2025-06-26 05:46:45,046 process.py archive():337 [1] Archiving steps for 2004.029.05 INFO 2025-06-26 05:46:45,046 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05, BASE_PATH = /data/auv_data INFO 2025-06-26 05:46:45,046 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:46:45,048 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.029.05_1S.nc INFO 2025-06-26 05:46:45,063 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:46:45,063 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.029.05_cal.nc INFO 2025-06-26 05:46:45,111 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:46:45,112 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.029.05_align.nc INFO 2025-06-26 05:46:45,158 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:46:45,176 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004029/2004.029.05 done. INFO 2025-06-26 05:46:45,191 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004029/2004.029.05 done. INFO 2025-06-26 05:46:45,195 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004029/2004.029.05 done. INFO 2025-06-26 05:46:45,207 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004029/2004.029.05 done. INFO 2025-06-26 05:46:45,231 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004029/2004.029.05 done. INFO 2025-06-26 05:46:45,237 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004029/2004.029.05 done. INFO 2025-06-26 05:46:45,251 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004029/2004.029.05 done. INFO 2025-06-26 05:46:45,264 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004029/2004.029.05 done. INFO 2025-06-26 05:46:45,265 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:46:45,265 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.029.05/dorado_2004.029.05_processing.log /Volumes/AUVCTD/surveys/2004/netcdf