INFO 2025-06-26 05:46:05,797 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:46:05,798 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD: Processed 10/4/04 - no metadata loaded anywhere, re-portaled & processed 7/26/05 - ctdToUse = ctd1 INFO 2025-06-26 05:46:05,798 process.py process_mission():449 [1] Processing AUVCTD mission 2004.028.05 by user docker_user on host 671049448ece INFO 2025-06-26 05:46:05,798 process.py download_process():165 [1] Download and processing steps for 2004.028.05 INFO 2025-06-26 05:46:05,798 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004028/2004.028.05 INFO 2025-06-26 05:46:05,798 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004028/2004.028.05 to /data/auv_data/dorado/missionlogs/2004.028.05 INFO 2025-06-26 05:46:10,629 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.028.05 INFO 2025-06-26 05:46:10,629 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.028.05/ctdDriver.log (5774603 bytes) INFO 2025-06-26 05:46:11,057 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.028.05/ctdDriver2.log (5774597 bytes) INFO 2025-06-26 05:46:11,500 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.028.05/gps.log (39884 bytes) INFO 2025-06-26 05:46:11,513 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.028.05/hydroscatlog.log (3939494 bytes) INFO 2025-06-26 05:46:11,979 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.028.05/navigation.log (11481725 bytes) INFO 2025-06-26 05:46:12,828 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.028.05/isuslog.log (316117 bytes) INFO 2025-06-26 05:46:12,863 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.028.05/parosci.log (3941558 bytes) INFO 2025-06-26 05:46:13,194 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.028.05/tailCone.log (3941275 bytes) INFO 2025-06-26 05:46:13,674 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.028.05/biolume.log (0 bytes) WARNING 2025-06-26 05:46:13,675 logs2netcdfs.py download_process_logs():790 [1] /data/auv_data/dorado/missionlogs/2004.028.05/biolume.log is empty INFO 2025-06-26 05:46:13,675 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.05 seconds WARNING 2025-06-26 05:46:13,675 process.py download_process():196 [1] No lopc.bin file for 2004.028.05 INFO 2025-06-26 05:46:13,675 process.py calibrate():227 [1] Calibration steps for 2004.028.05 INFO 2025-06-26 05:46:13,801 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2004.028.05 INFO 2025-06-26 05:46:13,820 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:46:13,822 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:46:15,202 calibrate.py _nudge_pos():1806 [1] 163: 0.140 0.0001460 0.0000526 60 0.20 110.198 49.521 2004-01-28T18:32:16.828209152 INFO 2025-06-26 05:46:15,231 calibrate.py _nudge_pos():1806 [1] 166: 0.140 0.0050390 0.0031522 11490 38.30 19.540 15.252 2004-01-28T19:10:36.820648960 INFO 2025-06-26 05:46:15,946 calibrate.py _nudge_pos():1806 [1] 241: 0.150 0.0035639 0.0025313 11449 38.16 13.867 12.291 2004-01-28T19:50:00.818704128 INFO 2025-06-26 05:46:16,432 calibrate.py _nudge_pos():1806 [1] 292: 0.140 0.0000135 -0.0000005 70 0.23 8.708 -0.414 2004-01-28T19:51:04.824319360 INFO 2025-06-26 05:46:16,538 calibrate.py _nudge_pos():1806 [1] 300: 0.150 0.0029119 0.0015191 11495 38.31 11.284 7.347 2004-01-28T20:29:30.826347392 INFO 2025-06-26 05:46:16,923 calibrate.py _nudge_pos():1806 [1] 330: 0.140 0.0021508 0.0009727 11435 38.11 8.378 4.729 2004-01-28T21:08:06.827690368 INFO 2025-06-26 05:46:17,620 calibrate.py _nudge_pos():1806 [1] 403: 0.160 0.0012428 0.0016511 11610 38.70 4.767 7.906 2004-01-28T21:48:00.823690368 INFO 2025-06-26 05:46:18,038 calibrate.py _nudge_pos():1806 [1] 447: 0.160 -0.0000133 0.0000188 20 0.06 -31.219 54.921 2004-01-28T21:48:47.820471040 INFO 2025-06-26 05:46:18,057 calibrate.py _nudge_pos():1806 [1] 449: 0.160 -0.0000304 0.0000152 15 0.05 -96.826 60.445 2004-01-28T21:48:51.820196864 INFO 2025-06-26 05:46:18,225 calibrate.py _nudge_pos():1806 [1] 467: 0.160 0.0003859 0.0028462 11390 37.96 1.509 13.892 2004-01-28T22:27:06.822978560 INFO 2025-06-26 05:46:18,659 calibrate.py _nudge_pos():1806 [1] 513: 0.160 -0.0000645 0.0000013 20 0.06 -151.190 3.725 2004-01-28T22:27:56.819553664 INFO 2025-06-26 05:46:18,829 calibrate.py _nudge_pos():1806 [1] 531: 0.160 -0.0012241 0.0027204 10405 34.68 -5.239 14.536 2004-01-28T23:02:54.825830272 INFO 2025-06-26 05:46:18,930 calibrate.py _nudge_pos():1862 [1] 520: - - - 4 0.01 - - INFO 2025-06-26 05:46:18,931 calibrate.py _nudge_pos():1868 [1] Points in final series = 82003 WARNING 2025-06-26 05:46:18,997 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:46:19,597 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:20,194 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:20,676 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:20,678 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.028.05/ctd1.nc INFO 2025-06-26 05:46:20,679 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 05:46:20,680 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:46:20,680 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:46:21,281 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:21,758 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:46:21,760 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.028.05/ctd2.nc INFO 2025-06-26 05:46:21,761 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 05:46:21,762 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:46:21,762 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:46:21,775 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.028.05 ERROR 2025-06-26 05:46:21,776 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.028.05 ERROR 2025-06-26 05:46:21,776 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.028.05 INFO 2025-06-26 05:46:21,841 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05_cal.nc INFO 2025-06-26 05:46:21,918 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:46:21,922 process.py align():251 [1] Alignment steps for 2004.028.05 INFO 2025-06-26 05:46:21,947 align.py process_cal():139 [1] Processing dorado_2004.028.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.028.05 INFO 2025-06-26 05:46:21,972 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:21,975 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:22,038 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:22,044 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:22,103 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:22,107 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:22,142 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:46:22,143 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:46:22,166 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:46:22,170 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:22,227 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:46:22,231 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,283 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:46:22,286 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,339 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:46:22,342 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,395 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:22,398 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,452 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:22,456 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,510 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:22,514 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,572 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:22,576 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,637 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:22,642 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,696 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:22,700 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,754 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:22,757 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,810 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:22,814 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,866 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:22,869 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,923 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:22,926 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:22,979 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:22,983 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:23,036 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:23,040 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:23,093 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:23,097 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:23,150 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:23,154 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:23,208 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:23,212 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:23,269 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:23,273 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:23,327 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.028.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:46:23,330 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:46:23,388 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:46:23,426 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:46:23,464 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:46:23,503 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:46:23,544 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05_align.nc INFO 2025-06-26 05:46:23,611 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:46:23,613 process.py resample():273 [1] Resampling steps for 2004.028.05 INFO 2025-06-26 05:46:23,614 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:46:23,637 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05_align.nc mission netCDF file INFO 2025-06-26 05:46:23,642 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05_align.nc mission netCDF file INFO 2025-06-26 05:46:23,643 resample.py get_mission_start_end():1145 [1] navigation: 2004-01-28T18:29:44.828621824 to 2004-01-28T23:03:05.625090304 (0 days 00:00:00.099993344 before mission_end) INFO 2025-06-26 05:46:23,645 resample.py get_mission_start_end():1145 [1] hs2 : 2004-01-28T18:29:27.089837056 to 2004-01-28T23:03:05.615091072 (0 days 00:00:00.109992576 before mission_end) INFO 2025-06-26 05:46:23,646 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-01-28T18:29:42.778762368 to 2004-01-28T23:03:05.655088384 (0 days 00:00:00.069995264 before mission_end) INFO 2025-06-26 05:46:23,648 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-01-28T18:29:43.048743936 to 2004-01-28T23:03:05.665087744 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 05:46:23,649 resample.py get_mission_start_end():1145 [1] isus : 2004-01-28T18:30:39.124902528 to 2004-01-28T23:03:04.945137024 (0 days 00:00:00.779946624 before mission_end) INFO 2025-06-26 05:46:23,651 resample.py get_mission_start_end():1145 [1] tailcone : 2004-01-28T18:29:24.650004352 to 2004-01-28T23:03:05.725083648 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:46:23,652 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05_align.nc mission netCDF file INFO 2025-06-26 05:46:23,652 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:23,839 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:23,873 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:23,905 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:23,937 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:23,966 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:23,995 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,023 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,051 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,077 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,102 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,128 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,154 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,180 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,207 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,232 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,258 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,286 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,313 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,340 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,367 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,394 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,421 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,434 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,447 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,460 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,491 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:46:24,675 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05_1S.nc INFO 2025-06-26 05:46:25,611 create_products.py gulper_odv():401 [1] No gulper times found for 2004.028.05 INFO 2025-06-26 05:46:25,611 process.py archive():337 [1] Archiving steps for 2004.028.05 INFO 2025-06-26 05:46:25,611 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05, BASE_PATH = /data/auv_data INFO 2025-06-26 05:46:25,611 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:46:25,615 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.028.05_1S.nc INFO 2025-06-26 05:46:25,633 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:46:25,634 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.028.05_cal.nc INFO 2025-06-26 05:46:25,703 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:46:25,704 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.028.05_align.nc INFO 2025-06-26 05:46:25,776 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:46:25,800 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004028/2004.028.05 done. INFO 2025-06-26 05:46:25,822 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004028/2004.028.05 done. INFO 2025-06-26 05:46:25,826 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004028/2004.028.05 done. INFO 2025-06-26 05:46:25,842 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004028/2004.028.05 done. INFO 2025-06-26 05:46:25,877 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004028/2004.028.05 done. INFO 2025-06-26 05:46:25,882 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004028/2004.028.05 done. INFO 2025-06-26 05:46:25,898 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004028/2004.028.05 done. INFO 2025-06-26 05:46:25,918 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004028/2004.028.05 done. INFO 2025-06-26 05:46:25,918 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:46:25,918 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.028.05/dorado_2004.028.05_processing.log /Volumes/AUVCTD/surveys/2004/netcdf