INFO 2025-06-26 05:45:06,189 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:45:06,189 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/12/05 - ctdToUse = ctd1 INFO 2025-06-26 05:45:06,189 process.py process_mission():449 [1] Processing BIOLUME mission 2003.338.20 by user docker_user on host 671049448ece INFO 2025-06-26 05:45:06,189 process.py download_process():165 [1] Download and processing steps for 2003.338.20 INFO 2025-06-26 05:45:06,189 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003338/2003.338.20 INFO 2025-06-26 05:45:06,189 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003338/2003.338.20 to /data/auv_data/dorado/missionlogs/2003.338.20 INFO 2025-06-26 05:45:07,135 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.338.20 INFO 2025-06-26 05:45:07,135 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.20/ctdDriver.log (1009579 bytes) INFO 2025-06-26 05:45:07,224 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.20/ctdDriver2.log (1009485 bytes) INFO 2025-06-26 05:45:07,307 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.20/gps.log (12386 bytes) INFO 2025-06-26 05:45:07,315 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.20/hydroscatlog.log (690134 bytes) INFO 2025-06-26 05:45:07,403 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.20/navigation.log (2800163 bytes) INFO 2025-06-26 05:45:07,605 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.20/isuslog.log (54485 bytes) INFO 2025-06-26 05:45:07,615 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.20/parosci.log (690710 bytes) INFO 2025-06-26 05:45:07,674 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.20/tailCone.log (690571 bytes) INFO 2025-06-26 05:45:07,766 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.20/biolume.log (785676 bytes) INFO 2025-06-26 05:45:07,845 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:45:07,889 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.75 seconds WARNING 2025-06-26 05:45:07,890 process.py download_process():196 [1] No lopc.bin file for 2003.338.20 INFO 2025-06-26 05:45:07,890 process.py calibrate():227 [1] Calibration steps for 2003.338.20 INFO 2025-06-26 05:45:07,956 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.338.20 INFO 2025-06-26 05:45:07,964 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:45:07,965 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:45:09,257 calibrate.py _nudge_pos():1806 [1] 159: 0.180 -0.0000460 0.0000695 35 0.11 -60.322 113.590 2003-12-04T10:11:35.665923200 INFO 2025-06-26 05:45:09,403 calibrate.py _nudge_pos():1806 [1] 175: 0.180 0.0129959 0.0205796 13400 44.66 43.253 85.381 2003-12-04T10:56:30.671302656 INFO 2025-06-26 05:45:09,572 calibrate.py _nudge_pos():1862 [1] 172: - - - 1 0.00 - - INFO 2025-06-26 05:45:09,572 calibrate.py _nudge_pos():1868 [1] Points in final series = 14278 WARNING 2025-06-26 05:45:09,587 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:45:09,704 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:45:09,826 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 10 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:45:09,911 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 10 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:45:09,912 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.338.20/ctd1.nc INFO 2025-06-26 05:45:09,914 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:45:09,914 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:45:09,914 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:45:10,027 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:45:10,116 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:45:10,118 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.338.20/ctd2.nc INFO 2025-06-26 05:45:10,119 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:45:10,119 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:45:10,119 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:45:10,130 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:45:10,281 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:45:10,286 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:45:10,286 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.338.20 ERROR 2025-06-26 05:45:10,286 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.338.20 INFO 2025-06-26 05:45:10,300 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20_cal.nc INFO 2025-06-26 05:45:10,346 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:45:10,350 process.py align():251 [1] Alignment steps for 2003.338.20 INFO 2025-06-26 05:45:10,372 align.py process_cal():139 [1] Processing dorado_2003.338.20_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.338.20 INFO 2025-06-26 05:45:10,380 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:45:10,382 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:45:10,400 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:45:10,402 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:45:10,419 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:45:10,421 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:45:10,431 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:45:10,431 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:45:10,438 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:45:10,440 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:45:10,457 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:45:10,459 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,476 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:45:10,478 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,494 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:45:10,496 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,512 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,514 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,530 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,532 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,548 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,550 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,566 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,568 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,584 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,586 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,603 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,605 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,621 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,623 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,639 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,641 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,658 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,660 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,677 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,678 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,695 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,697 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,713 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,716 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,732 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,734 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,751 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,753 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,769 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,771 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,788 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,790 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,806 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.20_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:10,808 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:10,827 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:45:10,843 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:45:10,859 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:45:10,877 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:45:10,895 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:45:10,918 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20_align.nc INFO 2025-06-26 05:45:10,964 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:45:10,966 process.py resample():273 [1] Resampling steps for 2003.338.20 INFO 2025-06-26 05:45:10,967 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:45:10,989 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20_align.nc mission netCDF file INFO 2025-06-26 05:45:10,993 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20_align.nc mission netCDF file INFO 2025-06-26 05:45:10,994 resample.py get_mission_start_end():1145 [1] navigation: 2003-12-04T10:09:13.475663872 to 2003-12-04T10:56:48.870055936 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:45:10,996 resample.py get_mission_start_end():1145 [1] hs2 : 2003-12-04T10:08:55.756877696 to 2003-12-04T10:56:48.800060800 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 05:45:10,997 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-12-04T10:09:02.916387200 to 2003-12-04T10:56:48.850057344 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 05:45:10,998 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-12-04T10:09:03.086375552 to 2003-12-04T10:56:48.760063488 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 05:45:10,999 resample.py get_mission_start_end():1145 [1] isus : 2003-12-04T10:10:07.871937536 to 2003-12-04T10:56:47.610142208 (0 days 00:00:01.259913728 before mission_end) INFO 2025-06-26 05:45:11,001 resample.py get_mission_start_end():1145 [1] biolume : 2003-12-04T10:08:50.827181056 to 2003-12-04T10:56:47.580110080 (0 days 00:00:01.289945856 before mission_end) INFO 2025-06-26 05:45:11,002 resample.py get_mission_start_end():1145 [1] tailcone : 2003-12-04T10:08:53.547029120 to 2003-12-04T10:56:48.720066176 (0 days 00:00:00.149989760 before mission_end) INFO 2025-06-26 05:45:11,002 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20_align.nc mission netCDF file INFO 2025-06-26 05:45:11,003 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,057 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,069 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,081 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,093 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,105 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,116 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,127 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,138 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,148 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,158 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,168 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,177 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,187 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,197 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,206 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,216 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,227 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,238 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,248 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,259 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,270 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,280 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,289 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,298 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,307 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,316 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,328 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:11,437 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20_1S.nc INFO 2025-06-26 05:45:12,178 create_products.py gulper_odv():401 [1] No gulper times found for 2003.338.20 INFO 2025-06-26 05:45:12,178 process.py archive():337 [1] Archiving steps for 2003.338.20 INFO 2025-06-26 05:45:12,178 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20, BASE_PATH = /data/auv_data INFO 2025-06-26 05:45:12,179 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:45:12,180 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.338.20_1S.nc INFO 2025-06-26 05:45:12,189 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:45:12,190 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.338.20_cal.nc INFO 2025-06-26 05:45:12,209 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:45:12,210 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.338.20_align.nc INFO 2025-06-26 05:45:12,231 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:45:12,243 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.20 done. INFO 2025-06-26 05:45:12,253 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.20 done. INFO 2025-06-26 05:45:12,257 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.20 done. INFO 2025-06-26 05:45:12,266 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.20 done. INFO 2025-06-26 05:45:12,282 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.20 done. INFO 2025-06-26 05:45:12,286 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.20 done. INFO 2025-06-26 05:45:12,294 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.20 done. INFO 2025-06-26 05:45:12,303 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.20 done. INFO 2025-06-26 05:45:12,319 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.20 done. INFO 2025-06-26 05:45:12,319 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:45:12,319 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.20/dorado_2003.338.20_processing.log /Volumes/AUVCTD/surveys/2003/netcdf