INFO 2025-06-26 05:43:58,270 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:43:58,270 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/12/05 - ctdToUse = ctd1 INFO 2025-06-26 05:43:58,271 process.py process_mission():449 [1] Processing BIOLUME mission 2003.336.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:43:58,271 process.py download_process():165 [1] Download and processing steps for 2003.336.02 INFO 2025-06-26 05:43:58,271 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003336/2003.336.02 INFO 2025-06-26 05:43:58,271 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003336/2003.336.02 to /data/auv_data/dorado/missionlogs/2003.336.02 INFO 2025-06-26 05:44:00,183 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.336.02 INFO 2025-06-26 05:44:00,183 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.336.02/ctdDriver.log (6291339 bytes) INFO 2025-06-26 05:44:00,689 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.336.02/ctdDriver2.log (6288517 bytes) INFO 2025-06-26 05:44:01,183 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.336.02/gps.log (30566 bytes) INFO 2025-06-26 05:44:01,194 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.336.02/hydroscatlog.log (4292834 bytes) INFO 2025-06-26 05:44:01,731 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.336.02/navigation.log (12510025 bytes) INFO 2025-06-26 05:44:02,689 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.336.02/isuslog.log (345429 bytes) INFO 2025-06-26 05:44:02,726 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.336.02/parosci.log (4293926 bytes) INFO 2025-06-26 05:44:03,090 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.336.02/tailCone.log (4294075 bytes) INFO 2025-06-26 05:44:03,625 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.44 seconds WARNING 2025-06-26 05:44:03,626 process.py download_process():196 [1] No lopc.bin file for 2003.336.02 INFO 2025-06-26 05:44:03,626 process.py calibrate():227 [1] Calibration steps for 2003.336.02 INFO 2025-06-26 05:44:03,759 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.336.02 INFO 2025-06-26 05:44:03,779 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:44:03,781 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:44:05,082 calibrate.py _nudge_pos():1806 [1] 152: 0.010 -0.0079685 -0.0198784 12485 41.61 -28.372 -88.516 2003-12-02T08:03:41.502650112 INFO 2025-06-26 05:44:05,476 calibrate.py _nudge_pos():1806 [1] 192: 0.020 -0.0042006 -0.0204583 12645 42.15 -14.774 -89.946 2003-12-02T08:46:29.496730496 INFO 2025-06-26 05:44:05,990 calibrate.py _nudge_pos():1806 [1] 246: 0.030 0.0000279 -0.0001665 15 0.05 88.673 -661.292 2003-12-02T08:47:26.492825984 INFO 2025-06-26 05:44:06,109 calibrate.py _nudge_pos():1806 [1] 258: 0.030 -0.0057595 -0.0212215 12770 42.56 -20.067 -92.388 2003-12-02T09:30:11.497111168 INFO 2025-06-26 05:44:06,545 calibrate.py _nudge_pos():1806 [1] 303: 0.030 -0.0034672 -0.0201610 13430 44.76 -11.491 -83.457 2003-12-02T10:15:41.500093056 INFO 2025-06-26 05:44:06,799 calibrate.py _nudge_pos():1806 [1] 329: 0.030 0.0000207 -0.0000160 90 0.30 10.370 -9.986 2003-12-02T10:16:24.497147648 INFO 2025-06-26 05:44:07,043 calibrate.py _nudge_pos():1806 [1] 354: 0.030 -0.0000275 -0.0001472 80 0.26 -15.467 -103.573 2003-12-02T10:17:04.494407680 INFO 2025-06-26 05:44:07,064 calibrate.py _nudge_pos():1806 [1] 356: 0.040 -0.0045751 -0.0181947 13590 45.30 -14.990 -74.431 2003-12-02T11:02:23.498143232 INFO 2025-06-26 05:44:07,506 calibrate.py _nudge_pos():1806 [1] 401: 0.040 -0.0000156 0.0000443 30 0.10 -23.935 84.993 2003-12-02T11:03:13.494718208 INFO 2025-06-26 05:44:07,703 calibrate.py _nudge_pos():1806 [1] 421: 0.040 0.0044662 -0.0171210 13600 45.33 14.628 -69.987 2003-12-02T11:48:53.497015168 INFO 2025-06-26 05:44:08,108 calibrate.py _nudge_pos():1806 [1] 461: 0.040 -0.0000358 -0.0000115 25 0.08 -66.406 -26.650 2003-12-02T11:49:37.494001152 INFO 2025-06-26 05:44:08,118 calibrate.py _nudge_pos():1806 [1] 462: 0.040 -0.0000432 -0.0000036 20 0.06 -101.330 -10.542 2003-12-02T11:49:41.493727104 INFO 2025-06-26 05:44:08,148 calibrate.py _nudge_pos():1806 [1] 465: 0.040 -0.0000275 -0.0000542 15 0.05 -87.362 -215.122 2003-12-02T11:49:46.493384576 INFO 2025-06-26 05:44:08,208 calibrate.py _nudge_pos():1806 [1] 471: 0.030 -0.0000796 -0.0001215 30 0.10 -122.042 -232.502 2003-12-02T11:49:57.502630528 INFO 2025-06-26 05:44:08,268 calibrate.py _nudge_pos():1806 [1] 477: 0.050 0.0141406 -0.0044402 8205 27.35 76.778 -30.086 2003-12-02T12:17:23.499871872 INFO 2025-06-26 05:44:08,462 calibrate.py _nudge_pos():1862 [1] 477: - - - 0 0.00 - - INFO 2025-06-26 05:44:08,462 calibrate.py _nudge_pos():1868 [1] Points in final series = 89349 WARNING 2025-06-26 05:44:08,537 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:44:09,220 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:44:09,895 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:44:10,432 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:44:10,434 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.336.02/ctd1.nc INFO 2025-06-26 05:44:10,435 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:44:10,436 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:44:10,436 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:44:11,091 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:44:11,628 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:44:11,630 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.336.02/ctd2.nc INFO 2025-06-26 05:44:11,632 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 05:44:11,632 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:44:11,632 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:44:11,646 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.336.02 ERROR 2025-06-26 05:44:11,647 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.336.02 ERROR 2025-06-26 05:44:11,647 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.336.02 INFO 2025-06-26 05:44:11,721 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02_cal.nc INFO 2025-06-26 05:44:11,801 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:44:11,804 process.py align():251 [1] Alignment steps for 2003.336.02 INFO 2025-06-26 05:44:11,829 align.py process_cal():139 [1] Processing dorado_2003.336.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.336.02 INFO 2025-06-26 05:44:11,856 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:44:11,859 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:44:11,923 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:44:11,927 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:44:11,991 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:44:11,995 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:44:12,033 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:44:12,033 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:44:12,058 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:44:12,063 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:44:12,127 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:44:12,131 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,187 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:44:12,191 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,249 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:44:12,253 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,310 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,313 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,370 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,374 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,429 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,433 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,489 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,493 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,549 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,553 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,610 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,614 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,670 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,674 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,731 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,735 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,791 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,795 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,851 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,855 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,910 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,914 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:12,970 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:12,974 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:13,031 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:13,035 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:13,091 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:13,095 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:13,152 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:13,156 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:13,214 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:13,218 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:13,275 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.336.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:13,279 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:13,340 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:44:13,381 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:44:13,421 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:44:13,463 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:44:13,507 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02_align.nc INFO 2025-06-26 05:44:13,575 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:44:13,577 process.py resample():273 [1] Resampling steps for 2003.336.02 INFO 2025-06-26 05:44:13,578 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:44:13,600 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02_align.nc mission netCDF file INFO 2025-06-26 05:44:13,605 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02_align.nc mission netCDF file INFO 2025-06-26 05:44:13,606 resample.py get_mission_start_end():1145 [1] navigation: 2003-12-02T07:19:52.902721536 to 2003-12-02T12:17:42.498570496 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 05:44:13,607 resample.py get_mission_start_end():1145 [1] hs2 : 2003-12-02T07:19:35.943883264 to 2003-12-02T12:17:42.458573056 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 05:44:13,609 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-12-02T07:19:51.852793472 to 2003-12-02T12:17:42.458573056 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 05:44:13,610 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-12-02T07:19:59.762251648 to 2003-12-02T12:17:42.398577152 (0 days 00:00:00.109992576 before mission_end) INFO 2025-06-26 05:44:13,612 resample.py get_mission_start_end():1145 [1] isus : 2003-12-02T07:20:47.758963712 to 2003-12-02T12:17:41.378647040 (0 days 00:00:01.129922688 before mission_end) INFO 2025-06-26 05:44:13,613 resample.py get_mission_start_end():1145 [1] tailcone : 2003-12-02T07:19:31.854163584 to 2003-12-02T12:17:42.508569728 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:44:13,614 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02_align.nc mission netCDF file INFO 2025-06-26 05:44:13,614 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:13,811 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:13,846 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:13,880 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:13,913 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:13,943 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:13,973 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,002 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,032 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,059 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,086 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,114 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,141 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,168 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,196 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,223 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,250 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,279 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,309 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,338 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,367 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,395 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,424 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,439 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,452 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,464 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,497 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:14,690 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02_1S.nc INFO 2025-06-26 05:44:15,597 create_products.py gulper_odv():401 [1] No gulper times found for 2003.336.02 INFO 2025-06-26 05:44:15,597 process.py archive():337 [1] Archiving steps for 2003.336.02 INFO 2025-06-26 05:44:15,597 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:44:15,597 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:44:15,599 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.336.02_1S.nc INFO 2025-06-26 05:44:15,615 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:44:15,616 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.336.02_cal.nc INFO 2025-06-26 05:44:15,690 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:44:15,691 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.336.02_align.nc INFO 2025-06-26 05:44:15,772 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:44:15,796 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003336/2003.336.02 done. INFO 2025-06-26 05:44:15,819 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003336/2003.336.02 done. INFO 2025-06-26 05:44:15,823 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003336/2003.336.02 done. INFO 2025-06-26 05:44:15,841 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003336/2003.336.02 done. INFO 2025-06-26 05:44:15,880 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003336/2003.336.02 done. INFO 2025-06-26 05:44:15,886 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003336/2003.336.02 done. INFO 2025-06-26 05:44:15,903 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003336/2003.336.02 done. INFO 2025-06-26 05:44:15,923 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003336/2003.336.02 done. INFO 2025-06-26 05:44:15,923 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:44:15,923 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.336.02/dorado_2003.336.02_processing.log /Volumes/AUVCTD/surveys/2003/netcdf