INFO 2025-06-26 05:43:19,967 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:43:19,967 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/12/05 - ctdToUse = ctd1 INFO 2025-06-26 05:43:19,967 process.py process_mission():449 [1] Processing AUVCTD mission 2003.309.01 by user docker_user on host 671049448ece INFO 2025-06-26 05:43:19,967 process.py download_process():165 [1] Download and processing steps for 2003.309.01 INFO 2025-06-26 05:43:19,967 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003309/2003.309.01 INFO 2025-06-26 05:43:19,968 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003309/2003.309.01 to /data/auv_data/dorado/missionlogs/2003.309.01 INFO 2025-06-26 05:43:20,985 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.309.01 INFO 2025-06-26 05:43:20,986 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.309.01/ctdDriver.log (1851475 bytes) INFO 2025-06-26 05:43:21,126 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.309.01/ctdDriver2.log (1851469 bytes) INFO 2025-06-26 05:43:21,264 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.309.01/gps.log (27206 bytes) INFO 2025-06-26 05:43:21,274 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.309.01/hydroscatlog.log (1266014 bytes) INFO 2025-06-26 05:43:21,440 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.309.01/navigation.log (5152751 bytes) INFO 2025-06-26 05:43:21,805 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.309.01/isuslog.log (101109 bytes) INFO 2025-06-26 05:43:21,819 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.309.01/parosci.log (1266854 bytes) INFO 2025-06-26 05:43:21,927 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.309.01/tailCone.log (1266379 bytes) WARNING 2025-06-26 05:43:21,928 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.309.01/tailCone.log INFO 2025-06-26 05:43:21,928 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.94 seconds WARNING 2025-06-26 05:43:21,928 process.py download_process():196 [1] No lopc.bin file for 2003.309.01 INFO 2025-06-26 05:43:21,928 process.py calibrate():227 [1] Calibration steps for 2003.309.01 INFO 2025-06-26 05:43:21,996 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.309.01 INFO 2025-06-26 05:43:22,006 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:43:22,008 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:43:22,614 calibrate.py _nudge_pos():1806 [1] 82: 0.200 -0.0000034 0.0000057 35 0.11 -4.438 9.355 2003-11-05T09:42:09.232356352 INFO 2025-06-26 05:43:23,299 calibrate.py _nudge_pos():1806 [1] 151: 0.200 -0.0000341 0.0000374 19 0.06 -84.361 115.524 2003-11-05T09:43:21.227424384 INFO 2025-06-26 05:43:23,373 calibrate.py _nudge_pos():1806 [1] 159: 0.190 -0.0002012 0.0000922 40 0.13 -229.826 131.456 2003-11-05T09:43:37.236327680 INFO 2025-06-26 05:43:23,457 calibrate.py _nudge_pos():1806 [1] 168: 0.200 -0.0028874 -0.0008924 11295 37.65 -11.391 -4.393 2003-11-05T10:21:24.231027968 INFO 2025-06-26 05:43:24,156 calibrate.py _nudge_pos():1806 [1] 243: 0.010 -0.0011873 -0.0006566 5750 19.16 -9.201 -6.349 2003-11-05T10:41:48.427164672 INFO 2025-06-26 05:43:24,204 calibrate.py _nudge_pos():1806 [1] 248: 0.010 -0.0002678 -0.0001456 640 2.13 -18.674 -12.666 2003-11-05T10:44:00.428121984 INFO 2025-06-26 05:43:24,243 calibrate.py _nudge_pos():1806 [1] 252: 0.200 -0.0001238 -0.0000380 344 1.14 -16.080 -6.162 2003-11-05T10:45:12.233203072 INFO 2025-06-26 05:43:24,272 calibrate.py _nudge_pos():1806 [1] 255: 0.200 -0.0001840 -0.0000414 499 1.66 -16.460 -4.625 2003-11-05T10:46:54.236215296 INFO 2025-06-26 05:43:24,349 calibrate.py _nudge_pos():1806 [1] 263: 0.200 -0.0004756 -0.0001731 949 3.16 -22.354 -10.153 2003-11-05T10:50:12.232651648 INFO 2025-06-26 05:43:24,969 calibrate.py _nudge_pos():1806 [1] 327: 0.200 -0.0000696 -0.0000296 139 0.46 -22.468 -11.921 2003-11-05T10:51:43.236417536 INFO 2025-06-26 05:43:25,069 calibrate.py _nudge_pos():1806 [1] 337: 0.200 -0.0000036 0.0000094 14 0.04 -12.208 40.210 2003-11-05T10:51:55.235595520 INFO 2025-06-26 05:43:25,088 calibrate.py _nudge_pos():1806 [1] 339: 0.190 -0.0001875 -0.0000234 184 0.61 -45.640 -7.117 2003-11-05T10:52:33.232992512 INFO 2025-06-26 05:43:25,107 calibrate.py _nudge_pos():1806 [1] 341: 0.200 -0.0000914 -0.0001097 29 0.09 -145.407 -217.765 2003-11-05T10:52:40.232512896 INFO 2025-06-26 05:43:25,127 calibrate.py _nudge_pos():1806 [1] 343: 0.200 -0.0023254 -0.0013355 1264 4.21 -82.028 -58.780 2003-11-05T10:56:54.235112704 INFO 2025-06-26 05:43:25,238 calibrate.py _nudge_pos():1806 [1] 355: 0.200 -0.0000745 -0.0000448 259 0.86 -12.869 -9.655 2003-11-05T10:57:57.230797184 INFO 2025-06-26 05:43:25,329 calibrate.py _nudge_pos():1806 [1] 363: 0.200 -0.0002697 -0.0000917 519 1.73 -23.193 -9.840 2003-11-05T10:59:48.233192960 INFO 2025-06-26 05:43:25,728 calibrate.py _nudge_pos():1806 [1] 406: 0.200 -0.0000423 0.0000207 24 0.08 -81.932 50.026 2003-11-05T11:00:35.229973376 INFO 2025-06-26 05:43:25,784 calibrate.py _nudge_pos():1806 [1] 412: 0.200 -0.0000193 -0.0000492 74 0.24 -11.793 -37.441 2003-11-05T11:00:55.228603520 INFO 2025-06-26 05:43:25,850 calibrate.py _nudge_pos():1806 [1] 419: 0.010 -0.0003731 -0.0001314 715 2.38 -23.282 -10.230 2003-11-05T11:03:24.428382464 INFO 2025-06-26 05:43:25,860 calibrate.py _nudge_pos():1806 [1] 420: 0.200 -0.0004891 -0.0000646 344 1.14 -63.530 -10.468 2003-11-05T11:04:33.233668992 INFO 2025-06-26 05:43:26,052 calibrate.py _nudge_pos():1862 [1] 419: - - - 1131 3.77 - - INFO 2025-06-26 05:43:26,052 calibrate.py _nudge_pos():1868 [1] Points in final series = 26060 WARNING 2025-06-26 05:43:26,076 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:43:26,280 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:43:26,484 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:43:26,639 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:43:26,640 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.309.01/ctd1.nc INFO 2025-06-26 05:43:26,642 calibrate.py _range_qc_combined_nc():898 [1] Setting 75 ctd1_salinity values to NaN INFO 2025-06-26 05:43:26,642 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:43:26,642 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:43:26,832 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:43:26,998 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:43:27,000 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.309.01/ctd2.nc INFO 2025-06-26 05:43:27,001 calibrate.py _range_qc_combined_nc():898 [1] Setting 41 ctd2_salinity values to NaN INFO 2025-06-26 05:43:27,001 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:43:27,001 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:43:27,010 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.309.01 ERROR 2025-06-26 05:43:27,010 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.309.01 ERROR 2025-06-26 05:43:27,010 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.309.01 ERROR 2025-06-26 05:43:27,011 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.309.01 INFO 2025-06-26 05:43:27,011 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01_cal.nc INFO 2025-06-26 05:43:27,056 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:43:27,059 process.py align():251 [1] Alignment steps for 2003.309.01 INFO 2025-06-26 05:43:27,080 align.py process_cal():139 [1] Processing dorado_2003.309.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.309.01 INFO 2025-06-26 05:43:27,091 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:43:27,093 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:43:27,119 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:43:27,121 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:43:27,145 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:43:27,148 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:43:27,162 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:43:27,162 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:43:27,172 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:43:27,174 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:43:27,198 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:43:27,200 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,223 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:43:27,225 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,247 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:43:27,249 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,271 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,274 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,296 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,298 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,321 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,323 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,345 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,347 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,370 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,372 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,395 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,397 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,419 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,422 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,445 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,447 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,471 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,474 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,497 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,499 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,522 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,525 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,548 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,550 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,574 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,576 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,600 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,602 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,625 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,627 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,651 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,654 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,676 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:43:27,679 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:43:27,705 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:43:27,725 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:43:27,745 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:43:27,755 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01_align.nc INFO 2025-06-26 05:43:27,796 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:43:27,798 process.py resample():273 [1] Resampling steps for 2003.309.01 INFO 2025-06-26 05:43:27,799 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:43:27,817 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01_align.nc mission netCDF file INFO 2025-06-26 05:43:27,821 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01_align.nc mission netCDF file INFO 2025-06-26 05:43:27,822 resample.py get_mission_start_end():1145 [1] navigation: 2003-11-05T09:41:03.636850048 to 2003-11-05T11:08:39.636789376 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:43:27,824 resample.py get_mission_start_end():1145 [1] hs2 : 2003-11-05T09:40:45.838069376 to 2003-11-05T11:08:39.416804480 (0 days 00:00:00.219984896 before mission_end) INFO 2025-06-26 05:43:27,825 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-11-05T09:41:01.956965120 to 2003-11-05T11:08:39.576793472 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 05:43:27,826 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-11-05T09:41:01.956965120 to 2003-11-05T11:08:39.576793472 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 05:43:27,828 resample.py get_mission_start_end():1145 [1] isus : 2003-11-05T09:41:57.583154432 to 2003-11-05T11:08:38.286881792 (0 days 00:00:01.349907584 before mission_end) INFO 2025-06-26 05:43:27,828 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01_align.nc mission netCDF file INFO 2025-06-26 05:43:27,829 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:27,905 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:27,921 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:27,936 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:27,952 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:27,967 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:27,982 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:27,998 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,014 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,027 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,040 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,052 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,065 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,077 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,090 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,103 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,115 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,129 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,143 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,157 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,170 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,183 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,196 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,206 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,215 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,224 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:43:28,340 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01_1S.nc INFO 2025-06-26 05:43:29,054 create_products.py gulper_odv():401 [1] No gulper times found for 2003.309.01 INFO 2025-06-26 05:43:29,054 process.py archive():337 [1] Archiving steps for 2003.309.01 INFO 2025-06-26 05:43:29,054 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01, BASE_PATH = /data/auv_data INFO 2025-06-26 05:43:29,054 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:43:29,056 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.309.01_1S.nc INFO 2025-06-26 05:43:29,066 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:43:29,067 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.309.01_cal.nc INFO 2025-06-26 05:43:29,093 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:43:29,094 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.309.01_align.nc INFO 2025-06-26 05:43:29,119 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:43:29,132 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.309.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003309/2003.309.01 done. INFO 2025-06-26 05:43:29,144 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.309.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003309/2003.309.01 done. INFO 2025-06-26 05:43:29,149 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.309.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003309/2003.309.01 done. INFO 2025-06-26 05:43:29,158 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.309.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003309/2003.309.01 done. INFO 2025-06-26 05:43:29,178 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.309.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003309/2003.309.01 done. INFO 2025-06-26 05:43:29,183 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.309.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003309/2003.309.01 done. INFO 2025-06-26 05:43:29,191 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.309.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003309/2003.309.01 done. INFO 2025-06-26 05:43:29,191 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:43:29,191 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.309.01/dorado_2003.309.01_processing.log /Volumes/AUVCTD/surveys/2003/netcdf