INFO 2025-06-26 05:42:39,681 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:42:39,681 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/12/05 - ctdToUse = ctd1 INFO 2025-06-26 05:42:39,681 process.py process_mission():449 [1] Processing AUVCTD mission 2003.308.04 by user docker_user on host 671049448ece INFO 2025-06-26 05:42:39,681 process.py download_process():165 [1] Download and processing steps for 2003.308.04 INFO 2025-06-26 05:42:39,682 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003308/2003.308.04 INFO 2025-06-26 05:42:39,682 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003308/2003.308.04 to /data/auv_data/dorado/missionlogs/2003.308.04 INFO 2025-06-26 05:42:41,344 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.308.04 INFO 2025-06-26 05:42:41,345 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.308.04/ctdDriver.log (5502947 bytes) INFO 2025-06-26 05:42:41,752 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.308.04/ctdDriver2.log (5502765 bytes) INFO 2025-06-26 05:42:42,165 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.308.04/gps.log (30866 bytes) INFO 2025-06-26 05:42:42,175 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.308.04/hydroscatlog.log (3754514 bytes) INFO 2025-06-26 05:42:42,631 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.308.04/navigation.log (15317899 bytes) INFO 2025-06-26 05:42:43,698 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.308.04/isuslog.log (302101 bytes) INFO 2025-06-26 05:42:43,731 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.308.04/parosci.log (3756278 bytes) INFO 2025-06-26 05:42:44,057 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.308.04/tailCone.log (3756043 bytes) WARNING 2025-06-26 05:42:44,057 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.308.04/tailCone.log INFO 2025-06-26 05:42:44,057 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.71 seconds WARNING 2025-06-26 05:42:44,057 process.py download_process():196 [1] No lopc.bin file for 2003.308.04 INFO 2025-06-26 05:42:44,057 process.py calibrate():227 [1] Calibration steps for 2003.308.04 INFO 2025-06-26 05:42:44,176 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.308.04 INFO 2025-06-26 05:42:44,194 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:42:44,196 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:42:45,759 calibrate.py _nudge_pos():1806 [1] 185: 0.020 -0.0018387 0.0015540 6810 22.70 -12.028 12.687 2003-11-04T23:40:12.346532608 INFO 2025-06-26 05:42:46,213 calibrate.py _nudge_pos():1806 [1] 234: 0.020 -0.0196383 0.0008102 11280 37.60 -77.556 3.993 2003-11-05T00:18:36.348697600 INFO 2025-06-26 05:42:46,752 calibrate.py _nudge_pos():1806 [1] 292: 0.030 -0.0385951 -0.0085126 11715 39.05 -146.776 -40.397 2003-11-05T00:58:36.344286592 INFO 2025-06-26 05:42:47,166 calibrate.py _nudge_pos():1806 [1] 336: 0.040 0.0000182 -0.0000492 15 0.05 57.811 -195.243 2003-11-05T00:59:22.341135616 INFO 2025-06-26 05:42:47,208 calibrate.py _nudge_pos():1806 [1] 340: 0.020 -0.0000386 0.0000184 35 0.11 -50.629 30.044 2003-11-05T00:59:32.350449920 INFO 2025-06-26 05:42:47,248 calibrate.py _nudge_pos():1806 [1] 344: 0.030 -0.0406773 -0.0062268 11405 38.01 -158.914 -30.353 2003-11-05T01:37:36.343985664 INFO 2025-06-26 05:42:47,697 calibrate.py _nudge_pos():1806 [1] 390: 0.030 -0.0000715 -0.0001258 35 0.11 -93.701 -205.749 2003-11-05T01:38:28.350423040 INFO 2025-06-26 05:42:47,881 calibrate.py _nudge_pos():1806 [1] 409: 0.030 -0.0000505 -0.0000158 15 0.05 -160.717 -62.877 2003-11-05T01:38:49.348984448 INFO 2025-06-26 05:42:47,911 calibrate.py _nudge_pos():1806 [1] 412: 0.030 -0.0418996 -0.0077856 11560 38.53 -161.511 -37.443 2003-11-05T02:17:24.350396032 INFO 2025-06-26 05:42:48,315 calibrate.py _nudge_pos():1806 [1] 454: 0.040 -0.0414012 -0.0095893 11420 38.06 -161.567 -46.683 2003-11-05T02:56:09.341123200 INFO 2025-06-26 05:42:48,776 calibrate.py _nudge_pos():1862 [1] 480: - - - 11503 38.34 - - INFO 2025-06-26 05:42:48,776 calibrate.py _nudge_pos():1868 [1] Points in final series = 78143 WARNING 2025-06-26 05:42:48,840 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:42:49,418 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:42:50,010 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:42:50,493 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:42:50,495 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.308.04/ctd1.nc INFO 2025-06-26 05:42:50,496 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:42:50,497 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:42:50,497 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:42:51,066 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:42:51,532 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:42:51,534 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.308.04/ctd2.nc INFO 2025-06-26 05:42:51,535 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:42:51,535 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:42:51,536 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:42:51,549 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.308.04 ERROR 2025-06-26 05:42:51,549 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.308.04 ERROR 2025-06-26 05:42:51,549 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.308.04 ERROR 2025-06-26 05:42:51,549 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.308.04 INFO 2025-06-26 05:42:51,550 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04_cal.nc INFO 2025-06-26 05:42:51,616 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:42:51,620 process.py align():251 [1] Alignment steps for 2003.308.04 INFO 2025-06-26 05:42:51,642 align.py process_cal():139 [1] Processing dorado_2003.308.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.308.04 INFO 2025-06-26 05:42:51,667 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:51,670 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:51,731 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:51,735 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:51,794 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:51,798 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:51,832 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:42:51,832 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:42:51,856 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:51,860 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:51,917 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:42:51,921 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:51,980 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:42:51,984 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,036 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:42:52,040 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,092 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,096 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,148 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,152 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,207 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,211 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,264 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,268 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,319 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,323 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,374 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,378 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,431 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,435 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,488 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,493 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,545 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,549 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,602 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,605 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,660 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,665 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,718 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,722 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,787 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,791 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,843 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,847 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,898 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,902 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:52,954 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:52,958 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:53,012 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.308.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:53,016 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:53,073 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:42:53,110 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:42:53,148 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:42:53,162 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04_align.nc INFO 2025-06-26 05:42:53,218 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:42:53,220 process.py resample():273 [1] Resampling steps for 2003.308.04 INFO 2025-06-26 05:42:53,221 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:42:53,241 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04_align.nc mission netCDF file INFO 2025-06-26 05:42:53,245 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04_align.nc mission netCDF file INFO 2025-06-26 05:42:53,247 resample.py get_mission_start_end():1145 [1] navigation: 2003-11-04T23:14:48.350933376 to 2003-11-05T03:35:16.990298240 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 05:42:53,248 resample.py get_mission_start_end():1145 [1] hs2 : 2003-11-04T23:14:30.222175232 to 2003-11-05T03:35:17.010296832 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 05:42:53,250 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-11-04T23:14:46.141084800 to 2003-11-05T03:35:17.050294144 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:42:53,251 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-11-04T23:14:46.381068288 to 2003-11-05T03:35:17.020296192 (0 days 00:00:00.029997952 before mission_end) INFO 2025-06-26 05:42:53,253 resample.py get_mission_start_end():1145 [1] isus : 2003-11-04T23:15:42.577218688 to 2003-11-05T03:35:16.430336640 (0 days 00:00:00.619957504 before mission_end) INFO 2025-06-26 05:42:53,254 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04_align.nc mission netCDF file INFO 2025-06-26 05:42:53,254 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,433 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,465 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,496 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,527 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,556 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,584 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,611 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,637 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,662 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,686 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,710 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,735 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,759 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,784 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,809 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,833 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,860 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,886 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,911 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,937 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,963 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:53,990 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:54,003 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:54,017 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:54,029 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:54,208 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04_1S.nc INFO 2025-06-26 05:42:55,331 create_products.py gulper_odv():401 [1] No gulper times found for 2003.308.04 INFO 2025-06-26 05:42:55,331 process.py archive():337 [1] Archiving steps for 2003.308.04 INFO 2025-06-26 05:42:55,332 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04, BASE_PATH = /data/auv_data INFO 2025-06-26 05:42:55,333 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:42:55,333 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.308.04_1S.nc INFO 2025-06-26 05:42:55,350 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:42:55,351 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.308.04_cal.nc INFO 2025-06-26 05:42:55,413 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:42:55,415 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.308.04_align.nc INFO 2025-06-26 05:42:55,475 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:42:55,496 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.308.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003308/2003.308.04 done. INFO 2025-06-26 05:42:55,518 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.308.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003308/2003.308.04 done. INFO 2025-06-26 05:42:55,522 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.308.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003308/2003.308.04 done. INFO 2025-06-26 05:42:55,538 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.308.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003308/2003.308.04 done. INFO 2025-06-26 05:42:55,587 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.308.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003308/2003.308.04 done. INFO 2025-06-26 05:42:55,593 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.308.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003308/2003.308.04 done. INFO 2025-06-26 05:42:55,611 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.308.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003308/2003.308.04 done. INFO 2025-06-26 05:42:55,611 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:42:55,611 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.308.04/dorado_2003.308.04_processing.log /Volumes/AUVCTD/surveys/2003/netcdf