INFO 2025-06-26 05:42:10,332 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:42:10,332 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:42:10,332 process.py process_mission():449 [1] Processing AUVCTD mission 2003.281.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:42:10,332 process.py download_process():165 [1] Download and processing steps for 2003.281.02 INFO 2025-06-26 05:42:10,332 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003281/2003.281.02 INFO 2025-06-26 05:42:10,332 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003281/2003.281.02 to /data/auv_data/dorado/missionlogs/2003.281.02 INFO 2025-06-26 05:42:12,180 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.281.02 INFO 2025-06-26 05:42:12,181 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.281.02/ctdDriver.log (5498283 bytes) INFO 2025-06-26 05:42:12,577 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.281.02/ctdDriver2.log (5498277 bytes) INFO 2025-06-26 05:42:12,984 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.281.02/gps.log (35486 bytes) INFO 2025-06-26 05:42:12,995 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.281.02/hydroscatlog.log (3751394 bytes) INFO 2025-06-26 05:42:13,436 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.281.02/navigation.log (15305747 bytes) INFO 2025-06-26 05:42:14,518 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.281.02/isuslog.log (299797 bytes) INFO 2025-06-26 05:42:14,551 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.281.02/parosci.log (3753350 bytes) INFO 2025-06-26 05:42:14,865 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.281.02/tailCone.log (3752923 bytes) WARNING 2025-06-26 05:42:14,866 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.281.02/tailCone.log INFO 2025-06-26 05:42:14,866 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.69 seconds WARNING 2025-06-26 05:42:14,866 process.py download_process():196 [1] No lopc.bin file for 2003.281.02 INFO 2025-06-26 05:42:14,866 process.py calibrate():227 [1] Calibration steps for 2003.281.02 INFO 2025-06-26 05:42:15,056 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.281.02 INFO 2025-06-26 05:42:15,075 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:42:15,077 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:42:16,640 calibrate.py _nudge_pos():1806 [1] 182: 0.150 0.0043233 0.0001789 11495 38.31 16.758 0.865 2003-10-08T17:39:25.041036672 INFO 2025-06-26 05:42:17,147 calibrate.py _nudge_pos():1806 [1] 235: 0.150 0.0034547 -0.0004800 11350 37.83 13.561 -2.351 2003-10-08T18:18:07.041968640 INFO 2025-06-26 05:42:17,839 calibrate.py _nudge_pos():1806 [1] 307: 0.140 0.0028944 -0.0009749 11525 38.41 11.188 -4.703 2003-10-08T18:57:43.049201152 INFO 2025-06-26 05:42:18,351 calibrate.py _nudge_pos():1806 [1] 360: 0.150 0.0020775 -0.0011279 11470 38.23 8.068 -5.467 2003-10-08T19:36:49.048489088 INFO 2025-06-26 05:42:18,868 calibrate.py _nudge_pos():1806 [1] 413: 0.150 0.0000115 -0.0000145 35 0.11 15.131 -23.631 2003-10-08T19:37:48.044447616 INFO 2025-06-26 05:42:18,946 calibrate.py _nudge_pos():1806 [1] 421: 0.160 0.0022052 -0.0014300 11520 38.40 8.526 -6.901 2003-10-08T20:16:19.046133120 INFO 2025-06-26 05:42:19,639 calibrate.py _nudge_pos():1806 [1] 492: 0.160 0.0036074 -0.0011928 11380 37.93 14.118 -5.827 2003-10-08T20:55:25.045421184 INFO 2025-06-26 05:42:20,104 calibrate.py _nudge_pos():1806 [1] 539: 0.160 0.0000216 -0.0000280 15 0.05 68.816 -111.014 2003-10-08T20:56:14.042064640 INFO 2025-06-26 05:42:20,312 calibrate.py _nudge_pos():1806 [1] 560: 0.160 0.0024346 -0.0003815 6555 21.85 16.541 -3.236 2003-10-08T21:18:25.040885120 INFO 2025-06-26 05:42:20,493 calibrate.py _nudge_pos():1862 [1] 557: - - - 0 0.00 - - INFO 2025-06-26 05:42:20,493 calibrate.py _nudge_pos():1868 [1] Points in final series = 78081 WARNING 2025-06-26 05:42:20,562 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:42:21,148 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:42:21,725 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:42:22,184 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:42:22,186 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.281.02/ctd1.nc INFO 2025-06-26 05:42:22,187 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:42:22,187 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:42:22,187 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:42:22,734 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:42:23,196 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:42:23,198 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.281.02/ctd2.nc INFO 2025-06-26 05:42:23,199 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 05:42:23,199 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:42:23,199 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:42:23,213 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.281.02 ERROR 2025-06-26 05:42:23,213 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.281.02 ERROR 2025-06-26 05:42:23,213 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.281.02 ERROR 2025-06-26 05:42:23,213 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.281.02 INFO 2025-06-26 05:42:23,214 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02_cal.nc INFO 2025-06-26 05:42:23,284 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:42:23,287 process.py align():251 [1] Alignment steps for 2003.281.02 INFO 2025-06-26 05:42:23,311 align.py process_cal():139 [1] Processing dorado_2003.281.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.281.02 INFO 2025-06-26 05:42:23,336 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:23,339 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:23,401 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:23,405 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:23,463 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:23,468 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:23,503 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:42:23,504 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:42:23,528 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:23,532 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:23,589 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:42:23,593 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:23,645 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:42:23,649 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:23,699 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:42:23,703 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:23,756 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:23,759 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:23,810 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:23,814 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:23,866 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:23,870 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:23,922 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:23,926 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:23,978 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:23,982 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,034 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,038 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,090 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,094 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,145 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,149 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,201 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,205 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,257 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,260 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,312 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,316 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,368 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,372 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,423 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,427 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,478 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,482 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,534 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,538 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,591 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,595 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,648 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.281.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:24,652 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:24,710 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:42:24,748 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:42:24,786 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:42:24,801 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02_align.nc INFO 2025-06-26 05:42:24,860 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:42:24,862 process.py resample():273 [1] Resampling steps for 2003.281.02 INFO 2025-06-26 05:42:24,863 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:42:24,884 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02_align.nc mission netCDF file INFO 2025-06-26 05:42:24,888 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02_align.nc mission netCDF file INFO 2025-06-26 05:42:24,889 resample.py get_mission_start_end():1145 [1] navigation: 2003-10-08T16:58:27.049420544 to 2003-10-08T21:18:43.309633536 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:42:24,891 resample.py get_mission_start_end():1145 [1] hs2 : 2003-10-08T16:58:09.180644736 to 2003-10-08T21:18:43.159643776 (0 days 00:00:00.149989760 before mission_end) INFO 2025-06-26 05:42:24,892 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-10-08T16:58:25.519525376 to 2003-10-08T21:18:43.159643776 (0 days 00:00:00.149989760 before mission_end) INFO 2025-06-26 05:42:24,893 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-10-08T16:58:25.549523328 to 2003-10-08T21:18:43.179642496 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 05:42:24,895 resample.py get_mission_start_end():1145 [1] isus : 2003-10-08T16:59:22.555618176 to 2003-10-08T21:18:41.889730816 (0 days 00:00:01.419902720 before mission_end) INFO 2025-06-26 05:42:24,895 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02_align.nc mission netCDF file INFO 2025-06-26 05:42:24,896 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,078 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,113 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,145 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,176 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,206 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,234 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,262 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,289 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,314 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,338 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,363 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,389 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,414 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,438 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,463 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,488 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,516 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,543 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,570 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,597 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,623 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,650 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,663 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,676 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,688 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:25,862 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02_1S.nc INFO 2025-06-26 05:42:26,993 create_products.py gulper_odv():401 [1] No gulper times found for 2003.281.02 INFO 2025-06-26 05:42:26,993 process.py archive():337 [1] Archiving steps for 2003.281.02 INFO 2025-06-26 05:42:26,993 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:42:26,993 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:42:26,995 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.281.02_1S.nc INFO 2025-06-26 05:42:27,011 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:42:27,012 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.281.02_cal.nc INFO 2025-06-26 05:42:27,079 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:42:27,080 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.281.02_align.nc INFO 2025-06-26 05:42:27,144 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:42:27,168 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.281.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003281/2003.281.02 done. INFO 2025-06-26 05:42:27,190 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.281.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003281/2003.281.02 done. INFO 2025-06-26 05:42:27,195 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.281.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003281/2003.281.02 done. INFO 2025-06-26 05:42:27,212 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.281.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003281/2003.281.02 done. INFO 2025-06-26 05:42:27,267 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.281.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003281/2003.281.02 done. INFO 2025-06-26 05:42:27,274 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.281.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003281/2003.281.02 done. INFO 2025-06-26 05:42:27,291 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.281.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003281/2003.281.02 done. INFO 2025-06-26 05:42:27,291 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:42:27,291 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.281.02/dorado_2003.281.02_processing.log /Volumes/AUVCTD/surveys/2003/netcdf