INFO 2025-06-26 05:41:55,576 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:41:55,576 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:41:55,576 process.py process_mission():449 [1] Processing AUVCTD mission 2003.280.03 by user docker_user on host 671049448ece INFO 2025-06-26 05:41:55,576 process.py download_process():165 [1] Download and processing steps for 2003.280.03 INFO 2025-06-26 05:41:55,576 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003280/2003.280.03 INFO 2025-06-26 05:41:55,577 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003280/2003.280.03 to /data/auv_data/dorado/missionlogs/2003.280.03 INFO 2025-06-26 05:41:57,289 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.280.03 INFO 2025-06-26 05:41:57,290 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.280.03/ctdDriver.log (4826139 bytes) INFO 2025-06-26 05:41:57,647 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.280.03/ctdDriver2.log (4826133 bytes) INFO 2025-06-26 05:41:58,007 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.280.03/gps.log (29906 bytes) INFO 2025-06-26 05:41:58,018 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.280.03/hydroscatlog.log (3293114 bytes) INFO 2025-06-26 05:41:58,413 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.280.03/navigation.log (13434143 bytes) INFO 2025-06-26 05:41:59,402 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.280.03/isuslog.log (263989 bytes) INFO 2025-06-26 05:41:59,432 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.280.03/parosci.log (3294950 bytes) INFO 2025-06-26 05:41:59,711 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.280.03/tailCone.log (3294331 bytes) WARNING 2025-06-26 05:41:59,711 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.280.03/tailCone.log INFO 2025-06-26 05:41:59,711 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.42 seconds WARNING 2025-06-26 05:41:59,711 process.py download_process():196 [1] No lopc.bin file for 2003.280.03 INFO 2025-06-26 05:41:59,711 process.py calibrate():227 [1] Calibration steps for 2003.280.03 INFO 2025-06-26 05:41:59,821 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.280.03 INFO 2025-06-26 05:41:59,838 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:41:59,840 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:42:01,291 calibrate.py _nudge_pos():1806 [1] 167: 0.070 0.0019745 0.0004035 11595 38.65 7.587 1.935 2003-10-07T18:16:00.449139968 INFO 2025-06-26 05:42:01,776 calibrate.py _nudge_pos():1806 [1] 219: 0.070 0.0018259 0.0008242 11355 37.85 7.163 4.035 2003-10-07T18:54:42.450071936 INFO 2025-06-26 05:42:02,347 calibrate.py _nudge_pos():1806 [1] 279: 0.080 0.0018011 0.0003584 11525 38.41 6.961 1.729 2003-10-07T19:34:06.448126976 INFO 2025-06-26 05:42:03,010 calibrate.py _nudge_pos():1806 [1] 347: 0.080 0.0020978 -0.0003695 11395 37.98 8.200 -1.803 2003-10-07T20:13:12.457414400 INFO 2025-06-26 05:42:03,658 calibrate.py _nudge_pos():1806 [1] 414: 0.080 0.0030775 -0.0006407 11520 38.40 11.897 -3.092 2003-10-07T20:52:42.455058432 INFO 2025-06-26 05:42:04,132 calibrate.py _nudge_pos():1806 [1] 464: 0.090 0.0000131 -0.0000376 55 0.18 10.835 -38.697 2003-10-07T20:53:42.450948480 INFO 2025-06-26 05:42:04,170 calibrate.py _nudge_pos():1806 [1] 468: 0.090 0.0025628 0.0000707 8805 29.35 12.962 0.446 2003-10-07T21:23:06.450106240 INFO 2025-06-26 05:42:04,338 calibrate.py _nudge_pos():1862 [1] 464: - - - 2 0.00 - - INFO 2025-06-26 05:42:04,338 calibrate.py _nudge_pos():1868 [1] Points in final series = 68532 WARNING 2025-06-26 05:42:04,395 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:42:04,889 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:42:05,392 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:42:05,792 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:42:05,794 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.280.03/ctd1.nc INFO 2025-06-26 05:42:05,795 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:42:05,796 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:42:05,796 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:42:06,273 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:42:06,683 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:42:06,685 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.280.03/ctd2.nc INFO 2025-06-26 05:42:06,686 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:42:06,686 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:42:06,686 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:42:06,698 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.280.03 ERROR 2025-06-26 05:42:06,699 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.280.03 ERROR 2025-06-26 05:42:06,699 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.280.03 ERROR 2025-06-26 05:42:06,699 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.280.03 INFO 2025-06-26 05:42:06,699 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03_cal.nc INFO 2025-06-26 05:42:06,764 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:42:06,767 process.py align():251 [1] Alignment steps for 2003.280.03 INFO 2025-06-26 05:42:06,790 align.py process_cal():139 [1] Processing dorado_2003.280.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.280.03 INFO 2025-06-26 05:42:06,811 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:06,814 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:06,868 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:06,871 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:06,922 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:06,926 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:06,956 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:42:06,956 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:42:06,977 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:42:06,981 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:42:07,037 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:42:07,040 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,086 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:42:07,090 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,135 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:42:07,138 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,185 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,189 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,236 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,240 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,285 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,288 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,334 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,338 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,384 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,387 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,433 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,437 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,483 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,487 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,533 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,537 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,582 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,586 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,632 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,635 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,682 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,686 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,732 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,736 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,783 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,786 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,833 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,836 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,883 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,887 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,934 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,937 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:07,983 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.280.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:42:07,986 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:42:08,038 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:42:08,072 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:42:08,105 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:42:08,118 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03_align.nc INFO 2025-06-26 05:42:08,171 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:42:08,173 process.py resample():273 [1] Resampling steps for 2003.280.03 INFO 2025-06-26 05:42:08,174 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:42:08,193 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03_align.nc mission netCDF file INFO 2025-06-26 05:42:08,197 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03_align.nc mission netCDF file INFO 2025-06-26 05:42:08,198 resample.py get_mission_start_end():1145 [1] navigation: 2003-10-07T17:34:57.457866368 to 2003-10-07T21:23:23.848914304 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:42:08,200 resample.py get_mission_start_end():1145 [1] hs2 : 2003-10-07T17:34:39.489097344 to 2003-10-07T21:23:23.698924544 (0 days 00:00:00.149989760 before mission_end) INFO 2025-06-26 05:42:08,201 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-10-07T17:34:55.647990400 to 2003-10-07T21:23:23.838914944 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 05:42:08,203 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-10-07T17:34:55.657989760 to 2003-10-07T21:23:23.838914944 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 05:42:08,204 resample.py get_mission_start_end():1145 [1] isus : 2003-10-07T17:35:52.034127744 to 2003-10-07T21:23:22.818984832 (0 days 00:00:01.029929472 before mission_end) INFO 2025-06-26 05:42:08,204 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03_align.nc mission netCDF file INFO 2025-06-26 05:42:08,205 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,362 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,392 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,420 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,448 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,473 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,496 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,520 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,544 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,566 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,588 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,610 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,632 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,653 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,675 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,697 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,719 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,744 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,767 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,790 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,812 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,835 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,858 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,870 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,882 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:08,893 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:42:09,054 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03_1S.nc INFO 2025-06-26 05:42:10,067 create_products.py gulper_odv():401 [1] No gulper times found for 2003.280.03 INFO 2025-06-26 05:42:10,068 process.py archive():337 [1] Archiving steps for 2003.280.03 INFO 2025-06-26 05:42:10,068 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03, BASE_PATH = /data/auv_data INFO 2025-06-26 05:42:10,069 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:42:10,070 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.280.03_1S.nc INFO 2025-06-26 05:42:10,085 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:42:10,086 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.280.03_cal.nc INFO 2025-06-26 05:42:10,140 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:42:10,141 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.280.03_align.nc INFO 2025-06-26 05:42:10,193 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:42:10,213 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.280.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003280/2003.280.03 done. INFO 2025-06-26 05:42:10,232 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.280.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003280/2003.280.03 done. INFO 2025-06-26 05:42:10,236 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.280.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003280/2003.280.03 done. INFO 2025-06-26 05:42:10,250 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.280.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003280/2003.280.03 done. INFO 2025-06-26 05:42:10,292 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.280.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003280/2003.280.03 done. INFO 2025-06-26 05:42:10,297 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.280.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003280/2003.280.03 done. INFO 2025-06-26 05:42:10,311 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.280.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003280/2003.280.03 done. INFO 2025-06-26 05:42:10,311 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:42:10,311 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.280.03/dorado_2003.280.03_processing.log /Volumes/AUVCTD/surveys/2003/netcdf