INFO 2025-06-26 05:41:28,930 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:41:28,930 process.py process_mission():434 [1] dorado_info[mission]["comment"] = OCCO2003246: missions {02} - ctdToUse = ctd1 INFO 2025-06-26 05:41:28,930 process.py process_mission():449 [1] Processing OCCO mission 2003.246.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:41:28,930 process.py download_process():165 [1] Download and processing steps for 2003.246.02 INFO 2025-06-26 05:41:28,930 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003246/2003.246.02 INFO 2025-06-26 05:41:28,931 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003246/2003.246.02 to /data/auv_data/dorado/missionlogs/2003.246.02 INFO 2025-06-26 05:41:31,143 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.246.02 INFO 2025-06-26 05:41:31,143 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.246.02/ctdDriver.log (6996219 bytes) INFO 2025-06-26 05:41:31,658 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.246.02/ctdDriver2.log (6996037 bytes) INFO 2025-06-26 05:41:32,193 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.246.02/gps.log (44426 bytes) INFO 2025-06-26 05:41:32,205 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.246.02/hydroscatlog.log (4772114 bytes) INFO 2025-06-26 05:41:32,761 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.246.02/navigation.log (19476682 bytes) INFO 2025-06-26 05:41:34,123 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.246.02/isuslog.log (383317 bytes) INFO 2025-06-26 05:41:34,163 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.246.02/parosci.log (4774838 bytes) INFO 2025-06-26 05:41:34,585 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.246.02/tailCone.log (4773931 bytes) WARNING 2025-06-26 05:41:34,585 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.246.02/tailCone.log INFO 2025-06-26 05:41:34,586 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.44 seconds WARNING 2025-06-26 05:41:34,586 process.py download_process():196 [1] No lopc.bin file for 2003.246.02 INFO 2025-06-26 05:41:34,586 process.py calibrate():227 [1] Calibration steps for 2003.246.02 INFO 2025-06-26 05:41:34,727 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.246.02 INFO 2025-06-26 05:41:34,750 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:41:34,752 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:41:36,315 calibrate.py _nudge_pos():1806 [1] 181: 0.110 0.0003525 -0.0000152 9261 30.87 1.694 -0.091 2003-09-03T15:46:19.097209344 INFO 2025-06-26 05:41:36,745 calibrate.py _nudge_pos():1806 [1] 225: 0.110 -0.0000099 0.0000238 25 0.08 -18.355 55.213 2003-09-03T15:47:08.103852160 INFO 2025-06-26 05:41:36,946 calibrate.py _nudge_pos():1806 [1] 246: 0.020 0.0002142 0.0000588 8206 27.35 1.162 0.398 2003-09-03T16:14:49.300052352 INFO 2025-06-26 05:41:37,393 calibrate.py _nudge_pos():1806 [1] 294: 0.180 -0.0035030 -0.0022338 12155 40.51 -12.819 -10.217 2003-09-03T16:56:07.300297728 INFO 2025-06-26 05:41:37,998 calibrate.py _nudge_pos():1806 [1] 358: 0.090 -0.0026550 -0.0011802 8146 27.15 -14.495 -8.055 2003-09-03T17:24:19.504373888 INFO 2025-06-26 05:41:38,484 calibrate.py _nudge_pos():1806 [1] 409: 0.020 0.0001636 0.0001541 9741 32.47 0.747 0.879 2003-09-03T17:57:37.697488128 INFO 2025-06-26 05:41:39,082 calibrate.py _nudge_pos():1806 [1] 471: 0.130 0.0002208 0.0001102 8755 29.18 1.122 0.700 2003-09-03T18:27:49.703357312 INFO 2025-06-26 05:41:39,650 calibrate.py _nudge_pos():1806 [1] 529: 0.100 -0.0037240 -0.0023841 12556 41.85 -13.193 -10.556 2003-09-03T19:10:37.897424000 INFO 2025-06-26 05:41:40,157 calibrate.py _nudge_pos():1806 [1] 581: 0.190 -0.0025008 -0.0010490 7275 24.25 -15.288 -8.017 2003-09-03T19:35:43.904255488 INFO 2025-06-26 05:41:40,647 calibrate.py _nudge_pos():1806 [1] 632: 0.130 0.0000658 0.0001562 9860 32.86 0.297 0.881 2003-09-03T20:09:26.095725952 INFO 2025-06-26 05:41:41,170 calibrate.py _nudge_pos():1806 [1] 686: 0.050 -0.0001703 0.0000962 9906 33.02 -0.765 0.540 2003-09-03T20:43:20.296373632 INFO 2025-06-26 05:41:41,578 calibrate.py _nudge_pos():1862 [1] 706: - - - 3 0.01 - - INFO 2025-06-26 05:41:41,578 calibrate.py _nudge_pos():1868 [1] Points in final series = 99305 WARNING 2025-06-26 05:41:41,658 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:41:42,419 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:43,193 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:43,782 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:43,785 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.246.02/ctd1.nc INFO 2025-06-26 05:41:43,786 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:41:43,787 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:41:43,787 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:41:44,481 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:41:45,076 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:41:45,078 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.246.02/ctd2.nc INFO 2025-06-26 05:41:45,080 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:41:45,080 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:41:45,080 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:41:45,096 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.246.02 ERROR 2025-06-26 05:41:45,096 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.246.02 ERROR 2025-06-26 05:41:45,097 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.246.02 ERROR 2025-06-26 05:41:45,097 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.246.02 INFO 2025-06-26 05:41:45,097 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02_cal.nc INFO 2025-06-26 05:41:45,175 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:41:45,178 process.py align():251 [1] Alignment steps for 2003.246.02 INFO 2025-06-26 05:41:45,203 align.py process_cal():139 [1] Processing dorado_2003.246.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.246.02 INFO 2025-06-26 05:41:45,232 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:45,236 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:45,310 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:45,315 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:45,386 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:45,391 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:45,434 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:41:45,434 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:41:45,464 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:45,469 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:45,538 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:45,542 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:45,605 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:45,609 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:45,672 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:45,676 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:45,739 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:45,743 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:45,806 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:45,810 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:45,873 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:45,877 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:45,940 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:45,945 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,007 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,012 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,074 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,079 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,144 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,149 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,213 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,218 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,282 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,286 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,350 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,354 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,417 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,422 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,487 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,491 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,554 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,559 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,622 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,626 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,690 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,694 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,759 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,764 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,829 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.246.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:46,833 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:46,914 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:46,968 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:47,015 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:47,031 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02_align.nc INFO 2025-06-26 05:41:47,095 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:41:47,097 process.py resample():273 [1] Resampling steps for 2003.246.02 INFO 2025-06-26 05:41:47,098 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:41:47,123 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02_align.nc mission netCDF file INFO 2025-06-26 05:41:47,127 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02_align.nc mission netCDF file INFO 2025-06-26 05:41:47,128 resample.py get_mission_start_end():1145 [1] navigation: 2003-09-03T15:12:49.104903168 to 2003-09-03T20:44:01.903523328 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 05:41:47,130 resample.py get_mission_start_end():1145 [1] hs2 : 2003-09-03T15:12:31.446113024 to 2003-09-03T20:44:02.023515136 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:41:47,131 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-09-03T15:12:47.465015552 to 2003-09-03T20:44:02.013515648 (0 days 00:00:00.009999488 before mission_end) INFO 2025-06-26 05:41:47,133 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-09-03T15:12:47.585007360 to 2003-09-03T20:44:01.863526016 (0 days 00:00:00.159989120 before mission_end) INFO 2025-06-26 05:41:47,134 resample.py get_mission_start_end():1145 [1] isus : 2003-09-03T15:13:43.501176832 to 2003-09-03T20:44:01.643541120 (0 days 00:00:00.379974016 before mission_end) INFO 2025-06-26 05:41:47,135 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02_align.nc mission netCDF file INFO 2025-06-26 05:41:47,135 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,355 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,395 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,432 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,470 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,503 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,536 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,568 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,601 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,631 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,661 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,691 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,721 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,751 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,781 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,811 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,840 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,873 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,907 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,939 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:47,972 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:48,005 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:48,038 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:48,055 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:48,070 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:48,084 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:48,287 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02_1S.nc INFO 2025-06-26 05:41:49,464 create_products.py gulper_odv():401 [1] No gulper times found for 2003.246.02 INFO 2025-06-26 05:41:49,464 process.py archive():337 [1] Archiving steps for 2003.246.02 INFO 2025-06-26 05:41:49,464 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:41:49,465 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:41:49,466 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.246.02_1S.nc INFO 2025-06-26 05:41:49,487 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:49,488 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.246.02_cal.nc INFO 2025-06-26 05:41:49,581 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:49,582 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.246.02_align.nc INFO 2025-06-26 05:41:49,660 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:49,688 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.246.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003246/2003.246.02 done. INFO 2025-06-26 05:41:49,713 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.246.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003246/2003.246.02 done. INFO 2025-06-26 05:41:49,717 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.246.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003246/2003.246.02 done. INFO 2025-06-26 05:41:49,736 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.246.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003246/2003.246.02 done. INFO 2025-06-26 05:41:49,798 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.246.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003246/2003.246.02 done. INFO 2025-06-26 05:41:49,805 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.246.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003246/2003.246.02 done. INFO 2025-06-26 05:41:49,824 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.246.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003246/2003.246.02 done. INFO 2025-06-26 05:41:49,824 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:41:49,824 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.246.02/dorado_2003.246.02_processing.log /Volumes/AUVCTD/surveys/2003/netcdf